Showing 1.014 kbp from chr1, positions 8,195,063 to 8,196,076

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	Reports & Analysis: Annotate Restriction Sites Download Decorated FASTA File Download GFF File Download Sequence File
Data Source The IRGSP genome sequence build 3 The IRGSP genome sequence build 4	Scroll/Zoom:    Show 50 Mbp Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1.014 kbp Show 1 kbp Show 200 bp Show 100 bp    Flip

 Overview

 Overview

 Region

 Region

 Details

 Details

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 Tracks

 Tracks

 Overview

 Overview

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Chromosome:overview

 Region

 Region

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BAC/PAC

 Analysis

 Analysis

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Restriction Sites

 BAC/PAC

 BAC/PAC

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BAC/PAC

 Comparative mapping

 Comparative mapping

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Oryza sativa ssp. indica cv. Guangluai 4

Oryza rufipogon W1943

Sorghum bicolor

 FST

 FST

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NIAS (Tos17)	NUS (Ds)	Genoplante (T-DNA)	TRIM (T-DNA)
CGT (Ds)	UCD (Ds)	POSTECH (T-DNA)
GSNU (Ds)	CSIRO (T-DNA)	RMD (T-DNA)

 General

 General

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ribosomal RNA	DNA/GC Content
transfer RNA	6-frame translation

 Gramene

 Gramene

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OMAP BESs (Oryza alta)	OMAP BESs (Oryza coarctata)	OMAP BESs (Oryza sativa ssp. japonica)	OMAP BESs (Oryza officinalis)	OMAP BESs (Oryza rufipogon)
OMAP BESs (Oryza australiensis)	OMAP BESs (Oryza glaberrima)	OMAP BESs (Oryza minuta)	OMAP BESs (Oryza punctata)
OMAP BESs (Oryza brachyantha)	OMAP BESs (Oryza granulata)	OMAP BESs (Oryza nivara)	OMAP BESs (Oryza ridleyi)

 MPSS

 MPSS

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MPSS (mRNA)

MPSS (sRNA)

 Marker

 Marker

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RFLP_marker

SSR_marker

 MicroRNA

 MicroRNA

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miRNA

 NCBI

 NCBI

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NCBI annotation (EST mapping)	NCBI annotation (EST mapping and prediction)
NCBI annotation (EST mapping) (frame usage)	NCBI annotation (EST mapping and prediction) (frame usage)

 PLUG

 PLUG

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Triticum_PLUG

Hordeum_PLUG

 RAP2

 RAP2

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RAP2 locus	RAP2 transcript (representative cDNA)	RAP2 transcript (EST support) (frame usage)	Gene prediction (frame usage)
RAP2 transcript (other cDNAs)	RAP2 transcript (representative cDNA) (frame usage)	Predicted locus
RAP2 transcript (other cDNAs) (frame usage)	RAP2 transcript (EST support)	Gene prediction

 TIGR/MSU

 TIGR/MSU

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MSU transcript (Release 5)

MSU transcript (Release 5) (frame usage)

 Transposable elements

 Transposable elements

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All_TEs (automated annotation by RetrOryza)	McGill (CACTA)	McGill (MULE)
RetrOryza specific annotation	AGI (Helitron)	Pack MULE

 Organelle

 Organelle

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organelle_predicted_gene	organelle_rRNA	organelle_RNA_editing
organelle_tRNA	organelle_repeat_region

 Display Settings

 Display Settings

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Generic genome browser version 1.66