RAP-DB staff
National Institute of Agrobiological Sciences
- Takeshi Itoh
- Tsuyoshi Tanaka
- Hisataka Numa
- Hiroaki Sakai
- Naoki Amano
- Sung Shin Lee
- Chieko Kobayashi
- Baltazar A. Antonio
- Takashi Matsumoto
- Yoshiaki Nagamura
National Institute of Genetics
- Kazuho Ikeo
Project Directors
National Institute of Agrobiological Sciences
- Takuji Sasaki
National Institute of Genetics
- Takashi Gojobori
Acknowledgements
The RAP-DB staff thanks Integrated DB Team of AIST/JBiC for providing automated annotation data, manual curation system SCARGOT and G-integra.
The RAP-DB staff is also grateful for the following contributors for providing their unpublished data:
- Curated gene family data: Dr. Nishtani of Tohoku University, Dr. Sato of Nagoya University, Dr. Sakakibara of RIKEN, Dr. Kuroda of Inplanta Innovations Inc., Dr. Hsing of Academia Sinica, and Ms. Yamasaki, Mr. Sato and Ms. Todokoro of BIRC.
- The NCBI annotation: Drs. Tatiana Tatusova and Alexandre Souvorov of NCBI
- Unpublished FSTs of T-DNA tagging lines: Drs. Gynheung An and Suyoung An of POSTECH
- Information of RetrOryza on the IRGSP genome: Drs. Olivier Panaud and Cristian Chaparro of University of Perpignan
- Mapping of Helitron: Drs. Andrea Zuccolo and Rod A. Wing of University of Arizona
- Mapping of CACTA: Drs. Douglas Hoen and Tom Bureau of McGill University
- MPSS mapping: Drs. Kan Nobuta and Blake Meyers of University of Delaware
- MicroRNA prediction: Drs. Manuel Echeverria and Benoit Piegu of University of Perpignan, UMR 5096 CNRS-IRD, and Dr. Yutaka Sato of Nagoya University
- OMAP BES mapping: Drs. Pankaj Jaiswal, Chengzhi Liang and Sharon Wei of Gramene
- tRNA: Drs. Takashi Abe, Yuko Yamada, Hachiro Inokuchi and Toshimichi Ikemura of Nagahama Institute of Bio-Science and Technology, Dr. Akira Muto of Hirosaki University (tRNADB-CE)
Drs. N. Jiang and K. Hanada kindly provided a Pack-MULE data set. If you use the data, please cite the following paper:
Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. "The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile" Plant Cell 21(1):25-38 (2009).