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Blast
BLAST
Query sequence
Enter query sequence in FASTA format
Upload FASTA file
Search database
DNA database
Rice genome sequence (IRGSP-1.0)
CDS + UTR + intron
CDS + UTR
CDS
1000 bp upstream sequence
2000 bp upstream sequence
3000 bp upstream sequence
1000 bp downstream sequence
2000 bp downstream sequence
3000 bp downstream sequence
Predicted CDS
Protein database
Rice genes (translated CDS)
Computational predictions (translated predicted CDS)
Search program
blastn (DNA query vs DNA database)
blastp (Protein query vs Protein database)
blastx (Translated DNA query vs Protein database)
tblastn (Protein query vs Translated DNA database)
tblastx (Translated DNA query vs Translated DNA database)
Advanced options
Number of results
Return a maximum of
10
100
500
1000
10000
results to display
Query filtering
Filter low complexity regions
Use lower case filtering
E-value cutoff
Expectation value:
e-100
e-50
e-20
e-10
0.01
0.1
1
10
100
Score matrix
Substitution matrix:
BLOSUM80
BLOSUM62
BLOSUM45
PAM70
PAM30
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© 2012 National Institute of Agrobiological Sciences
