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IRGSP-1.0: 50 kbp from chr01:1..50,000

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Landmark or Region: Examples: ABC transporter, chr1, chr02:1..105000, Os03g0100300, AK060852, LOC_Os01g54390.
Data Source IRGSP-1.0	Scroll/Zoom: Flip

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Gene locus

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Representative transcripts

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Repeat regions

Repeat regions

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Tracks

Tracks

FSTs

FSTs

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CGT (Ds) [?]	GSNU (Ds) [?]	UCD (Ds) [?]
CSIRO (T-DNA) [?]	NIAS (Tos17) [?]
Genoplante (T-DNA) [?]	POSTECH (T-DNA) [?]

Gene predictions

Gene predictions

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JIGSAW [?]

General

General

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DNA/GC Content

MSU Osa1 Gene Annotation

MSU Osa1 Gene Annotation

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MSU Osa1 Rice Gene Models [?]

Markers

Markers

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SSR [?]

Masked regions

Masked regions

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Organelle [?]

Repeat regions [?]

Repeat units [?]

Miscs

Miscs

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Centromere [?]

Minimum Tiling Path [?]

RAP1, RAP2, and RAP3 transcripts [?]

OMAP

OMAP

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Oryza alta [?]	Oryza glaberrima [?]	Oryza officinalis [?]
Oryza australiensis [?]	Oryza granulata [?]	Oryza punctata [?]
Oryza brachyantha [?]	Oryza minuta [?]	Oryza ridleyi [?]
Oryza coarctata [?]	Oryza nivara [?]	Oryza rufipogon [?]

Protein alignments

Protein alignments

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Swiss-Prot (identical) [?]

Swiss-Prot plant division [?]

TrEMBL plant division [?]

RAP annotation

RAP annotation

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Gene locus [?]	Predicted locus [?]
Predicted genes [?]	Representative transcripts [?]

RNA-seq

RNA-seq

Phosphate

Phosphate

Root

Root

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HighP, 10d, Root [?]	HighP, 5d, Root [?]	LowP, 1d, Root [?]
HighP, 10d-Rec, Root [?]	LowP, 10d, Root [?]	LowP, 5d, Root [?]
HighP, 1d, Root [?]	LowP, 10d-Rec, Root [?]	P, Cont, Root [?]

Shoot

Shoot

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HighP, 10d, Shoot [?]	LowP, 10d, Shoot [?]	P, Cont, Shoot [?]
HighP, 1d, Shoot [?]	LowP, 1d, Shoot [?]
HighP, 5d, Shoot [?]	LowP, 5d, Shoot [?]

Salinity

Salinity

Root

Root

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Salt, 1h, Root [?]

Salt, Cont, Root [?]

Shoot

Shoot

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Salt, 1h, Shoot [?]

Salt, Cont, Shoot [?]

Tissues

Tissues

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Callus [?]	Panicle (before flowering) [?]	Shoot [?]
Leaf [?]	Root [?]
Panicle (after flowering) [?]	Seed [?]

RNAs

RNAs

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miRBase [?]	rRNAs [?]	tRNAs [?]
rRNA regions [?]	sRNAs [?]

Short-Read Assembly Browser

Short-Read Assembly Browser

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Guangluai4 [?]

Koshihikari [?]

Transcript mapping

Transcript mapping

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ESTs (Oryza) [?]	mRNAs (Oryza) [?]	O. sativa indica & O. rufipogon FL-cDNAs [?]
ESTs (Other Poaceae) [?]	mRNAs (Other cereals) [?]	O. sativa japonica FL-cDNAs [?]

Analysis

Analysis

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Restriction Sites

Snapshots

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Snapshot Timestamp [GMT]

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