build4: 50 kbp from Mt:1..50,000

BAC/PAC

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BAC/PAC [?]

Comparative mapping

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Oryza sativa ssp. indica cv. Guangluai 4 [?]

Oryza rufipogon W1943 [?]

Sorghum bicolor [?]

FST

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NIAS (Tos17) [?]	UCD (Ds) [?]	RMD (T-DNA) [?]
CGT (Ds) [?]	CSIRO (T-DNA) [?]	TRIM (T-DNA) [?]
GSNU (Ds) [?]	Genoplante (T-DNA) [?]
NUS (Ds) [?]	POSTECH (T-DNA) [?]

General

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ribosomal RNA [?]	DNA/GC Content [?]
transfer RNA [?]	6-frame translation [?]

Gramene

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OMAP BESs (Oryza alta) [?]	OMAP BESs (Oryza granulata) [?]	OMAP BESs (Oryza punctata) [?]
OMAP BESs (Oryza australiensis) [?]	OMAP BESs (Oryza sativa ssp. japonica) [?]	OMAP BESs (Oryza ridleyi) [?]
OMAP BESs (Oryza brachyantha) [?]	OMAP BESs (Oryza minuta) [?]	OMAP BESs (Oryza rufipogon) [?]
OMAP BESs (Oryza coarctata) [?]	OMAP BESs (Oryza nivara) [?]
OMAP BESs (Oryza glaberrima) [?]	OMAP BESs (Oryza officinalis) [?]

MPSS

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MPSS (mRNA) [?]

MPSS (sRNA) [?]

Marker

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RFLP_marker [?]

SSR_marker [?]

MicroRNA

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miRNA [?]

NCBI

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NCBI annotation (EST mapping) [?]	NCBI annotation (EST mapping and prediction) [?]
NCBI annotation (EST mapping) (frame usage) [?]	NCBI annotation (EST mapping and prediction) (frame usage) [?]

PLUG

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Triticum_PLUG

Hordeum_PLUG

RAP2

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RAP2 locus [?]	RAP2 transcript (representative cDNA) (frame usage) [?]	Gene prediction [?]
RAP2 transcript (other cDNAs) [?]	RAP2 transcript (EST support) [?]	Gene prediction (frame usage) [?]
RAP2 transcript (other cDNAs) (frame usage) [?]	RAP2 transcript (EST support) (frame usage) [?]
RAP2 transcript (representative cDNA) [?]	Predicted locus [?]

TIGR/MSU

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MSU transcript (Release 5) [?]

MSU transcript (Release 5) (frame usage) [?]

Transposable elements

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All_TEs (automated annotation by RetrOryza) [?]	McGill (CACTA) [?]	McGill (MULE) [?]
RetrOryza specific annotation [?]	AGI (Helitron) [?]	Pack MULE [?]

Organelle

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organelle_predicted_gene [?]	organelle_rRNA	organelle_RNA_editing
organelle_tRNA	organelle_repeat_region

Overview

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Chromosome:overview

Region

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BAC/PAC [?]

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp)

build4: 50 kbp from Mt:1..50,000

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Landmark or Region: Examples: ABC transporter, chr1, chr2:100001..105000, Os03g0100300, AK060852.
Data Source	Scroll/Zoom: Flip