Os03t0177400-01

Name: Os03t0177400-01
Type: mRNA
Description: EF-1 alpha.
Source: build5_rep
Position: chr03:4093565..4096430 (+ strand)
Length: 2866 bp
Alias: AK105030
  AK072648
  AK119172
Expression: Search RiceXPro database by AK105030
GO: Molecular Function: GTPase activity (GO:0003924)
  Molecular Function: GTP binding (GO:0005525)
  Molecular Function: translation elongation factor activity (GO:0003746)
  Cellular Component: cytoplasm (GO:0005737)
  Biological Process: translational elongation (GO:0006414)
Gene_symbols: REFA1
  refa1
InterPro: Protein synthesis factor, GTP-binding (IPR000795)
  Translation elongation factor EFTu/EF1A, C-terminal (IPR004160)
  Translation elongation factor EFTu/EF1A, domain 2 (IPR004161)
  Translation elongation factor EF1A, eukaryotic and archaeal (IPR004539)
  Translation elongation and initiation factors/Ribosomal, beta-barrel (IPR009000)
  Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (IPR009001)
KEGG: Os03t0177400-01 (EC:3.6.5.3)
Link_to: 2069 (Oryzabase)
  Protein synthesis factor, GTP-binding (Plant Gene Family Database)
  Interactive Database of Cereal Gene Phylogeny (IDCGP)
Locus_id: Os03g0177400
NIAS_FLcDNA: 001-012-F06 (Online Clone Ordering)
Note: EF-1 alpha.
ORF_evidence: O50075 (UniProt)
Transcript_evidence: AK105030 (DDBJ, Best hit)
load_id: Os03t0177400-01
primary_id: 3636784
gbrowse_dbid: assembly:database
Parts:
Type: 5'UTR
Source: build5_rep
Position: chr03:4093565..4093637 (+ strand)
Length: 73 bp
parent_id: Os03t0177400-01
primary_id: 3636785
Type: 5'UTR
Source: build5_rep
Position: chr03:4094170..4094191 (+ strand)
Length: 22 bp
parent_id: Os03t0177400-01
primary_id: 3636786
Type: CDS
Source: build5_rep
Position: chr03:4094192..4094653 (+ strand)
Length: 462 bp
parent_id: Os03t0177400-01
primary_id: 3636787
Type: CDS
Source: build5_rep
Position: chr03:4095356..4096237 (+ strand)
Length: 882 bp
parent_id: Os03t0177400-01
primary_id: 3636788
Type: 3'UTR
Source: build5_rep
Position: chr03:4096238..4096430 (+ strand)
Length: 193 bp
parent_id: Os03t0177400-01
primary_id: 3636789
>Os03t0177400-01 class=Sequence position=chr03:4093565..4096430 (+ strand)
CCCCTCTCCC ATCTCACCCC GCCGCCGCCG CCGCCGCAGC CTCCTCAAGG CTGCTCCCAT CCTCTCCTTC GAGGTCAGCT
GCAGATCTTC TCTCTTCTCC TTGTTTGCGC CGGTTCATGG TAGTTCGTAG CCGTAGATCT GATTCGATGG AGCGAGGTTT
GGGTGATTTG ATGCCTGGGC ATGTTGTTTT TGTCCATTAT TAGTAACTTT TTCTGTGTAT TCGTCTCACT GCTATGATCT
TAGTTTGCTG TTCGTTGACG CGATGATTTA TTGACTTGTC GGTGAATCAT TTATGTACGT TGAAAATTAT CGGTAGAATC
GGACTATTAA CTTGATGTGC TGCAGAATCA TGTACATAAG TTGAAAATCA TCGGTAGAAT CAGTAGAAGT ATTTCTATCT
AGAATCCGTT CGAATATCTC TGTTTTTATG TTCGAATAGA TGGTGTTATC GTCTATGCCT GGTTCGGTTT GGTCGATTAC
TGCGCGTTAG CACTTATAAT TGATGTCGAA GTTCATCTGA TCTGTGAGCT TGCCTGTAAT ATTATTTGGA GTTAGAAATT
ATGCACGCCT GTTGTTTCTA ATCTTTGTTT CGTTCTGTTT TGCAGTTAGC TTCCTCCTTA TTCAACCATG GGTAAGGAGA
AGACGCACAT CAACATTGTG GTCATTGGCC ACGTCGACTC CGGCAAGTCG ACCACCACGG GCCATCTGAT CTACAAGCTT
GGAGGTATCG ACAAGCGTGT GATTGAGAGG TTCGAGAAGG AAGCCGCTGA GATGAACAAG AGGTCCTTCA AGTACGCGTG
GGTGCTTGAC AAGCTCAAGG CCGAGCGTGA GAGAGGTATC ACCATCGATA TCGCCCTGTG GAAGTTCGAG ACCACCAAGT
ACTACTGCAC GGTCATCGAT GCCCCTGGTC ACCGTGACTT CATCAAGAAC ATGATCACGG GTACCTCCCA GGCTGACTGT
GCCGTGCTCA TCATTGACTC CACCACTGGT GGTTTTGAGG CTGGTATCTC CAAGGATGGC CAGACCCGTG AGCACGCTCT
TCTTGCTTTC ACTCTTGGAG TGAAGCAGAT GATCTGCTGC TGCAACAAGG TATATATCTG TAGTGTTTGG TCTTTTGTTA
TGATTGATGA GCCTAGCACT TGTTTATACA TATTTGTGAT GCTATTGCAG AAACTTTTGG TTACATAAAT GATTTACTGC
TATATTCAGT TGGAAATTGG AAATGAACAT ATTCGTGATG CTATTCCAGA TATTCTTGTT TTCTGTTATG ATTGATGAGC
AACTTCTGTG AATATTCATG ATGCTAGTCC TGAATACTGT TGATTACATC AATGAAGTAG CATTTTCTTT TATTGATTTA
TCCCTCTGTG CTAGTTTTTC TGACTGTCTA CCTTCTATGC ATCTAAGACT GCAATTTACC ATGCATCTAA GGCTGCTACT
GTTGATTGTT GCTTTTGTTA TGACTGTCTG TCTTTATGAT GCATCTAAGA TTGCAATTGT TGTTGGTTGC TTTCCTGCTA
CTACTAGCTT TAGTAATTTA CTGCTGCAAG AAACTATACA TATCTTCTGT TAGATTTGGT TAAGTTCATT TAGATATCGT
GCTGTATGTT ACTTTATACT AGACTTGTAT TGATGTTGCT GTCCACCTGT ATTTCATTAC ATATTGGTTG CTATTATTTC
ATTTTTTGTA TCTTATATGG TGTTTATAAT ATGTTTCATA CCATTTGTAG TTAGTAATGT ATTTGTATGC TGGTGCCTGC
CCCTGATTTG TTTTCCTTTG TTCTGTTACA GATGGATGCC ACCACTCCCA AGTACTCCAA GGCCCGTTAC GATGAAATCG
TGAAGGAAGT CTCATCCTAC CTGAAGAAGG TCGGCTACAA CCCTGACAAG ATTCCCTTCG TTCCCATCTC TGGGTTTGAG
GGTGACAACA TGATTGAGAG GTCCACCAAC CTTGACTGGT ACAAGGGCCC CACCTTGCTT GAGGCTCTTG ACCAGATCAA
CGAGCCCAAG AGGCCATCAG ACAAGCCCCT GCGTCTTCCC CTTCAGGACG TGTACAAGAT CGGTGGTATT GGCACCGTGC
CTGTGGGTCG TGTTGAGACT GGAGTCCTCA AGCCTGGTAT GGTGGTGACC TTTGGTCCCA GCGGCCTGAC CACTGAGGTC
AAGTCGGTTG AGATGCACCA CGAGGCTCTC CAGGAGGCTC TTCCTGGTGA CAACGTCGGG TTCAACGTGA AGAACGTTGC
GGTGAAGGAT CTGAAGCGTG GGTACGTGGC CTCCAACTCC AAGGATGACC CTGCCAAGGA GGCTGCCAGC TTCACCTCCC
AGGTGATCAT CATGAACCAC CCTGGCCAGA TCGGCAACGG CTACGCCCCA GTGCTGGACT GCCACACCTC CCACATTGCC
GTCAAGTTTG CTGAGCTGGT GACCAAGATC GACAGACGAT CTGGTAAGGA GCTGGAGAAG GAGCCCAAGT TCCTCAAGAA
CGGTGATGCT GGTATGGTTA AGATGATTCC CACCAAGCCC ATGGTTGTGG AGACCTTCTC TGAGTACCCT CCTCTTGGTC
GTTTTGCCGT GCGGGACATG AGGCAAACGG TGGCTGTTGG CGTCATCAAG AACGTGGAGA AGAAGGACCC AACCGGTGCC
AAGGTGACCA AGGCTGCCGC CAAGAAGAAA TGAGCCTCGT TCAAGTGGTG CTTTCCATAT CTGCATTTGA GATATCTAGC
TCTTTTAGTA CTCGTTAAGT TTTGTCGACG GTCATTTCAG TTGTTGCATT GACCGTTAAT ATCTGCTCGC TTTGTGCACT
ATGTCAGTCA TTTAAAACTC TATTTTCTGT TCGGTTTAAA CTTGGATGTT AAGACTTATT ATTGCC