Locus
Os01g0100600
Description
Single-stranded nucleic acid binding R3H domain containing protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
CGSNL Gene Name
Oryzabase Gene Symbol Synonym(s)
Oryzabase Gene Name Synonym(s)
Transcript Evidence
AK121362 (DDBJ, Best hit)
Protein Evidence
B9EYQ6 (UniProt)
Literature
Note
Manual Curation
Gene Ontology (GO)
Molecular Function: nucleic acid binding (GO:0003676)
Functional domain (InterPro)
Single-stranded nucleic acid binding R3H (IPR001374)
SUZ domain (IPR024771)
Full-length cDNA
J023124E16 (Online Clone Ordering)
Expression Databases
TENOR (Os01t0100600-01)
RiceXPro (AK121362)
Others
KEGG (Os01t0100600-01)
Transcript |
1960 bp |
>Os01t0100600-01 Single-stranded nucleic acid binding R3H domain containing protein. ACAAGTCACAGGGAGGAGTCGAAAAGAGTCAATACCAGCCGCGCCACCGCTCCCTCGCTG ACCTGCCCGTGTTCGCCCCTCTCGCCGGCCGCCGACCCGCCCCTGCTGCTCACCGCTCCA GCCTCCGCTCATCCCAAGCCTTCCACCACAACCCCCCACCCCTGCTCGCCCGCGCACCCA GCTCACCAGCGCACCCGTCTGGGGTCTGCCTGCCGCTTCTCCCTCCCGTGCAGGTGCAGG GGAAGAGGCAAGGAGGGCAAGACCGGGGCGCAGTGGGGAGTACGGAGGAAGCTGGTGCAG CGTGGGAGAGAGGGAGCTGGAAAAGAAGGAAGAAAGGGGGGCAGTACAAGGGGGACTTGG GAGGAGGAAGAAGGGGGAATATTTTGAGTATATGATCAATTTCGCCGTCCAATCCAGATG TGCGCCAACCAATTCGCTATGTTCTTGTGTTGCTCTGTGCGAACGAAACTTTAAACTGGA ACAGGTTGAGGAGCTGGCTTCACTCATCAAGGACAACCTCTACAGCAAGCACCTCGTCCT CTCTACTGAGGAAACCCTCGTCGGGATCCTACAGAACCAGTACCACAACTCTGACGATGA CGAGGATGAGGACGATATAGTGGCAGCATACCGCGGGACAAATAGGAATATCCTAGAGCT CCAACCTGCCAGCTCCTATCAACGTCTTCTTTTGCATCGCCTTGCCGACATCTACGGGTT TGTTCATGAATCTGTTGGTGAAGGTGAAGATCGACACTTAGTTCTCCAGCGCTGCCCTGA AACTGCCATCCCACCTGTCCTCGTAAGCGACGTATTATGGGAGTATGACAACAAAGATAC ATCGACATCTGTTGTAGTGAAGAGGAAAGATACAGATCTTGAAGAAGCCTGGAAGGAAGA TGCCCAAGAAAATATTTCTGCTGAAATCTCGCATTTGAAAAATGATGCAGATTTGAAGGC TTTGCAAAAGTCAGTTGCACCCCCAGCACCGTCACTCAAGGAGAGGGAAGCTGCTTATCG AGCTGCTCGCGAGCGTATCTTCTCAGCGCATGATGCCAAGGGAAATGGGACAGCAGTGGC AAAACCTAGGCATGTTCCTGCTGTTGCTCAACGGATGATCGCGCATGCACTTGGCAAAAA AGTTGAGAGCCCGACAGAGACAGCAGCCGTGAAGAATGGCAAAGGAAAGGAGCCAGCGGA AAGTAGTAGGAACAAGTTAAACCCACGCACAGCAGGTGGCAAGGAAGATAGCAGGTATGT TGAGAATGGCAGAATGAGGTTGCACACCGGGAATCCATGTAAGCAGAGCTGGCGTACAAG TAACAGTAGAGCTGCTAGTAGTGTTAGTCCTGATGAACTGAAGAGGGAGCAGGTTGGAGC GGCAAAGAGGATGTTTGTGCATGCCCTGCGGCTGCCTGGTGTTGAAGGAAGTGATGGTCC GGTGCGGAAAGGCAAGTAAGAGTCGAGTTGAGATGGGAGGTGTAATGTAGGTATTAGGAT GGAGTGAAATGGCAACTCTGTGATGATTTTCATCTGGTGATACTATGCTGGTATAAGATG AGATGGAAGGCCTGGTATCCCTTGGTGGAAGAAGTTGAAGCGCAAAATGCAATGCTGGGG ATATGCAAGTGGAAGAAGTTGAAGCGCAAAATGCAATGCTGGGGGATATGCAAGTGGAAG TGGTGAGAGCTAGCTGCTTGCCGATGGCAGCAGTTGTGGCAATATTGAGTGCAATTGACA GGTCTTTGTTTGTTTTGTTTTTTTTTTTGCCAGAAGCTGCAGTTTAGCAGGTCCTTATTT TCGTCAGAAGTTACAAAGAGAGAATATGCCAATTTTTAGCTTTATATTTTGCTGAAGGCA GACAAGTTGTAGAGGAATATGCTGATCCTTAGAAAGAACTTTGTGTAGCCTATTTGGATG GTTTCAGACTTTCAGTGATAGAGTCGGAGCAATGTTGGTC
CDS |
1068 bp |
>Os01t0100600-01 Single-stranded nucleic acid binding R3H domain containing protein. ATGATCAATTTCGCCGTCCAATCCAGATGTGCGCCAACCAATTCGCTATGTTCTTGTGTT GCTCTGTGCGAACGAAACTTTAAACTGGAACAGGTTGAGGAGCTGGCTTCACTCATCAAG GACAACCTCTACAGCAAGCACCTCGTCCTCTCTACTGAGGAAACCCTCGTCGGGATCCTA CAGAACCAGTACCACAACTCTGACGATGACGAGGATGAGGACGATATAGTGGCAGCATAC CGCGGGACAAATAGGAATATCCTAGAGCTCCAACCTGCCAGCTCCTATCAACGTCTTCTT TTGCATCGCCTTGCCGACATCTACGGGTTTGTTCATGAATCTGTTGGTGAAGGTGAAGAT CGACACTTAGTTCTCCAGCGCTGCCCTGAAACTGCCATCCCACCTGTCCTCGTAAGCGAC GTATTATGGGAGTATGACAACAAAGATACATCGACATCTGTTGTAGTGAAGAGGAAAGAT ACAGATCTTGAAGAAGCCTGGAAGGAAGATGCCCAAGAAAATATTTCTGCTGAAATCTCG CATTTGAAAAATGATGCAGATTTGAAGGCTTTGCAAAAGTCAGTTGCACCCCCAGCACCG TCACTCAAGGAGAGGGAAGCTGCTTATCGAGCTGCTCGCGAGCGTATCTTCTCAGCGCAT GATGCCAAGGGAAATGGGACAGCAGTGGCAAAACCTAGGCATGTTCCTGCTGTTGCTCAA CGGATGATCGCGCATGCACTTGGCAAAAAAGTTGAGAGCCCGACAGAGACAGCAGCCGTG AAGAATGGCAAAGGAAAGGAGCCAGCGGAAAGTAGTAGGAACAAGTTAAACCCACGCACA GCAGGTGGCAAGGAAGATAGCAGGTATGTTGAGAATGGCAGAATGAGGTTGCACACCGGG AATCCATGTAAGCAGAGCTGGCGTACAAGTAACAGTAGAGCTGCTAGTAGTGTTAGTCCT GATGAACTGAAGAGGGAGCAGGTTGGAGCGGCAAAGAGGATGTTTGTGCATGCCCTGCGG CTGCCTGGTGTTGAAGGAAGTGATGGTCCGGTGCGGAAAGGCAAGTAA
Protein |
355 aa |
>Os01t0100600-01 Single-stranded nucleic acid binding R3H domain containing protein. MINFAVQSRCAPTNSLCSCVALCERNFKLEQVEELASLIKDNLYSKHLVLSTEETLVGIL QNQYHNSDDDEDEDDIVAAYRGTNRNILELQPASSYQRLLLHRLADIYGFVHESVGEGED RHLVLQRCPETAIPPVLVSDVLWEYDNKDTSTSVVVKRKDTDLEEAWKEDAQENISAEIS HLKNDADLKALQKSVAPPAPSLKEREAAYRAARERIFSAHDAKGNGTAVAKPRHVPAVAQ RMIAHALGKKVESPTETAAVKNGKGKEPAESSRNKLNPRTAGGKEDSRYVENGRMRLHTG NPCKQSWRTSNSRAASSVSPDELKREQVGAAKRMFVHALRLPGVEGSDGPVRKGK*
5'UTR
chr01:22841..23231 (+ strand) : 391 bp
CDS
chr01:23232..23281 (+ strand) : 50 bp
chr01:23572..23847 (+ strand) : 276 bp
chr01:23962..24033 (+ strand) : 72 bp
chr01:24492..24577 (+ strand) : 86 bp
chr01:25445..25519 (+ strand) : 75 bp
chr01:25883..26391 (+ strand) : 509 bp
3'UTR
chr01:26392..26892 (+ strand) : 501 bp
FASTA
>Os01t0100600-01 class=Sequence position=chr01:22841..26892 (+ strand) ACAAGTCACA GGGAGGAGTC GAAAAGAGTC AATACCAGCC GCGCCACCGC TCCCTCGCTG ACCTGCCCGT GTTCGCCCCT CTCGCCGGCC GCCGACCCGC CCCTGCTGCT CACCGCTCCA GCCTCCGCTC ATCCCAAGCC TTCCACCACA ACCCCCCACC CCTGCTCGCC CGCGCACCCA GCTCACCAGC GCACCCGTCT GGGGTCTGCC TGCCGCTTCT CCCTCCCGTG CAGGTGCAGG GGAAGAGGCA AGGAGGGCAA GACCGGGGCG CAGTGGGGAG TACGGAGGAA GCTGGTGCAG CGTGGGAGAG AGGGAGCTGG AAAAGAAGGA AGAAAGGGGG GCAGTACAAG GGGGACTTGG GAGGAGGAAG AAGGGGGAAT ATTTTGAGTA TATGATCAAT TTCGCCGTCC AATCCAGATG TGCGCCAACC AATTCGCTAT GGTATAATTG ATAATAATGA TACCTTCCTT GTTGTATCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCGATTTC TTATCTTTCT TTGCTCATGC CTGACGATGT CATGTCACAG CTGCTATGCT ATAGCAATCT CCTTACTTCA GGATTATCAT GTATGTAAAT CACTAGTAAA TGTATTACGA GAATATATAC AATTAAGCAt gtatcacatc gatgtaattg gcttagtaca ataaagcttt cattatctaa aaaAATTACA GTTCTTGTGT TGCTCTGTGC GAACGAAACT TTAAACTGGA ACAGGTTGAG GAGCTGGCTT CACTCATCAA GGACAACCTC TACAGCAAGC ACCTCGTCCT CTCTACTGAG GAAACCCTCG TCGGGATCCT ACAGAACCAG TACCACAACT CTGACGATGA CGAGGATGAG GACGATATAG TGGCAGCATA CCGCGGGACA AATAGGAATA TCCTAGAGCT CCAACCTGCC AGCTCCTATC AACGTCTTCT TTTGCATCGC CTTGCCGACA TCTACGGGTG CTCTTTCCAA TTCCATTCGA CCTGCTTCAC CTACCCTCTT CTCAAATACT AACTTAACTG GATAGAGTAA TATTTGCAAC TACTAATGTC TTGCTTTTGT GTCGCTGCTA GGTTTGTTCA TGAATCTGTT GGTGAAGGTG AAGATCGACA CTTAGTTCTC CAGCGCTGCC CTGAAACTGC CATGTATGAT ACCAAAAGTG ACCACACATC TCTTTGTTAT TGAGTGTCGT CTTATGTCTC CCTATGCCCT CATTTCGCTG TTTCTTATAC TACAAACATG TACAGTTTAA TTTCCACCTG CATCATTCTT CAATGCAATA GAAAAAAGGG TTAATAGAAA AACACATTGT TTCCACACAA AAAACTGTCT TCAGGGAAAT AAAACAAAAG CTATCCCGTA AACTCATGAT CACATCTTGT TTGTTATTCC TTGCCGTCTT GCTCCAATTG CATCCCTAGT TCCACCTGTG GCGAACCATT TGGCTGCTCA CACTTTAAGA TAATCACGCC ATTTGCCTCC CATAGCTATT GTGTTGACTC AGAGCACGGA AGCTGAAATC ACACTTTTCT TGTGACCTAC ACATGAGACA TTATTCTGTA GTTCTATTAC CTCTGATTAC TTATTATTTC ATATTGCGCA GCCCACCTGT CCTCGTAAGC GACGTATTAT GGGAGTATGA CAACAAAGAT ACATCGACAT CTGTTGTAGT GAAGAGGAAA GATACAGGTG AATTGTTATA ATTTCATTTT GTGGATCATT CATGATGAAG CATTTTGATG GGGTGACACT ACCCTGTAGC ACCCATGCTG CCAATTCTGT TTGTGCTTTA GTAAATGGTC CATGGAGAAG ATTCGTGTGT ACTTATGATC CGTTGTTCGG CTTGTCCGGG CTCAAGAAAA TTTCTGGATC CTCCTCTGTT TTGTTCCCCT ACATAACCAC TGTATTACCT GACCAATATA TTTTTTTTTC TGAAAACAAT CATAATGCCC TTTACTCATA ACCCTAAGAT ACCTTCCCTA ATTAATGAAA TGGGTCCATA GCGGATCAAG AAAAACTAAA AAAAAGTATG GGAGGATAAA ATGAAGAATC AGGGCACACT AGAAATTCTC TTCGCAAAAA AATTATGAAA TGATTCCTCT TGATGGTAGT GACCAAATCT GGAAATAGGA ACTAGGAAGT CATTGTGCAG TGCCTTAGCC TGAATTTATT TCACCCTCTC ATAAAAAGGG ATTAAAAATG CACAGTATGG TCGTTGAGCA TGATTCGCGT GACAAAGGAG TAAAGCTGGC TGCTGGATGC CAGCTGGAGA AATACTGGTA TTTTTTTCCA TGTGAGTTTG AAGTGGGTAG TCAATTTGAC TTACATTTTC ATCGTTCCAC AGGCATAGTT TGATGTGTCA TAAGACATTC AGTTCCATAG ATATCTTCTT GTTATTCCCT TAAAAAAGAT ATTTCTTATT ATTCTCTCAA GAAATTCTAA GTGCACCATC TGCACAAAGA AAAACCTATT CTACATGTAT AAATGTGATG CACTGTGCAA TCTTATGTGT GTGTAACAGG TTAATAATTA GCATTTTGAA TTCTCTTCTA ACAGATCTTG AAGAAGCCTG GAAGGAAGAT GCCCAAGAAA ATATTTCTGC TGAAATCTCG CATTTGAAAA ATGATGCAGG TACGTTGCGC TTGCTGTCCA CCTCTCAACA AAGCGTCTTT CAAACTGTCT TAGGGTGTGT TTGGAACTCC AAGTTCCCAA CTCCATTGCT TTGTTTTcgt acgcttttca aactgttaaa cgttgcgttt ttttgcaaaa agtttctata caaagttgct tttaaaaatc atattgatcc aattttgaaa aaaatagcaa atacttaatt aatcatgtac taatggaccg ctccgttttc cgtgccaact gtttgggatg ggaaccggca tatgcgaacG CAGCCTTAAG CTTGGTTCTC TGCATAATTT CAGTCGAGGA ATTTAAGTCT GAAAAAAAAC CCAATCAACT CTTTTATTTC AGATTTGAAG GCTTTGCAAA AGTCAGTTGC ACCCCCAGCA CCGTCACTCA AGGAGAGGGA AGCTGCTTAT CGAGCTGCTC GCGAGCGTAT CTTCTCAGCG CATGATGCCA AGGGAAATGG GACAGCAGTG GCAAAACCTA GGCATGTTCC TGCTGTTGCT CAACGGATGA TCGCGCATGC ACTTGGCAAA AAAGTTGAGA GCCCGACAGA GACAGCAGCC GTGAAGAATG GCAAAGGAAA GGAGCCAGCG GAAAGTAGTA GGAACAAGTT AAACCCACGC ACAGCAGGTG GCAAGGAAGA TAGCAGGTAT GTTGAGAATG GCAGAATGAG GTTGCACACC GGGAATCCAT GTAAGCAGAG CTGGCGTACA AGTAACAGTA GAGCTGCTAG TAGTGTTAGT CCTGATGAAC TGAAGAGGGA GCAGGTTGGA GCGGCAAAGA GGATGTTTGT GCATGCCCTG CGGCTGCCTG GTGTTGAAGG AAGTGATGGT CCGGTGCGGA AAGGCAAGTA AGAGTCGAGT TGAGATGGGA GGTGTAATGT AGGTATTAGG ATGGAGTGAA ATGGCAACTC TGTGATGATT TTCATCTGGT GATACTATGC TGGTATAAGA TGAGATGGAA GGCCTGGTAT CCCTTGGTGG AAGAAGTTGA AGCGCAAAAT GCAATGCTGG GGATATGCAA GTGGAAGAAG TTGAAGCGCA AAATGCAATG CTGGGGGATA TGCAAGTGGA AGTGGTGAGA GCTAGCTGCT TGCCGATGGC AGCAGTTGTG GCAATATTGA GTGCAATTGA CAGGTCTTTG TTTGTTTTGT TTTTTTTTTT GCCAGAAGCT GCAGTTTAGC AGGTCCTTAT TTTCGTCAGA AGTTACAAAG AGAGAATATG CCAATTTTTA GCTTTATATT TTGCTGAAGG CAGACAAGTT GTAGAGGAAT ATGCTGATCC TTAGAAAGAA CTTTGTGTAG CCTATTTGGA TGGTTTCAGA CTTTCAGTGA TAGAGTCGGA GCAATGTTGG TC
Locus: Os01g0100600
Loading...
Loading...
Locus: Os01g0100600
Loading...
Loading...