Locus
Os01g0102000
Description
Non-specific phospholipase C, Mesocotyl development
RAP-DB Gene Symbol Synonym(s)
OsNPC6
RAP-DB Gene Name Synonym(s)
non-specific phospholipase C6
CGSNL Gene Symbol
NPC5
CGSNL Gene Name
NON-SPECIFIC PHOSPHOLIPASE C5
Oryzabase Gene Symbol Synonym(s)
OsNPC6, OsNPC5, NPC6
Oryzabase Gene Name Synonym(s)
Non-specific phospholipase C5
Transcript Evidence
AK101065 (truncated)
Inferred from literature
Protein Evidence
Inferred from literature
Literature
PMID: 34021760
Note
- Exon-intron structures, exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
May 24, 2021
Gene Ontology (GO)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
Functional domain (InterPro)
Alkaline-phosphatase-like, core domain superfamily (IPR017850)
Phosphoesterase (IPR007312)
Experimentally confirmed subcellular location
plasma membrane (GO:0005886)
Full-length cDNA
J033023E01 (Online Clone Ordering)
Expression Databases
TENOR (Os01t0102000-01)
RiceXPro (AK101065)
Others
Oryzabase (21052)
KEGG (Os01t0102000-01)
Transcript |
1759 bp |
>Os01t0102000-01 Non-specific phospholipase C, Mesocotyl development ATTTTCTTTTTCTCTAGCTTGTTGTACTTGGTACTCCACACCACTAGCTAGTAATGTGGC CGCTCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGC GGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGA TAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGA TGCAGCGGCTGCTGGGCCTCCCCATCGACGGCCTCACCGGCGCAGAGTGCAACCCGGCTC CAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCG TCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGAC CCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCG CCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGC TCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCA TCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCG TCGCCCACGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCC TCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCT ACCGCcgcctccgcaccgtcgccaacgccgcccgcggcaccttccgccgctacgacgccg ccttccgcgaccacgcccgcaggggcctcctcccggcgctctccgtcatcgagccacgct acttcgacctcaccggcacgcccgccgacgacgaccacccggcgcacgacgtcgccaacg gccagaggctggtcaaggacgtctacgaggcgctgcgggcgggcccgcagtggaaccaca cactgctcatcatcacctacgacgagcacggcggcttctacgaccacgtcccgccgccca atgtcggcgtccccagccccgacgccatccgtggcccgctgcccttcttcttcaggttcg accgcctcggcgtcAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGG TGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGtccgagtacgagcactcctccatcc cggccaccatcaagaagatattcaacctcagctccgacttcctcaccaggagggatgcgt gggcgggcaccttcgagcacctcttcacggacctggacgagccaaGGACGGATTGCCCGG AGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACG GAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTCAACGGCG ACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGC AGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCA AACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAA CCACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAA TTAATTACCTACCTTAGCT
CDS |
1644 bp |
>Os01t0102000-01 Non-specific phospholipase C, Mesocotyl development ATGTGGCCGCTCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATG GGTCGGCGGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGAT TCCAAGATAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTG GGGTGGATGCAGCGGCTGCTGGGCCTCCCCATCGACGGCCTCACCGGCGCAGAGTGCAAC CCGGCTCCAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGAC CTCGTCGTCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGG TTCCGACCCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTC CGCAGCGCCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCG TCGCGGCTCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTC TCCTCCATCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCAC GGCGCCGTCGCCCACGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTT GACTCCCTCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACC CTCTTCTACCGCcgcctccgcaccgtcgccaacgccgcccgcggcaccttccgccgctac gacgccgccttccgcgaccacgcccgcaggggcctcctcccggcgctctccgtcatcgag ccacgctacttcgacctcaccggcacgcccgccgacgacgaccacccggcgcacgacgtc gccaacggccagaggctggtcaaggacgtctacgaggcgctgcgggcgggcccgcagtgg aaccacacactgctcatcatcacctacgacgagcacggcggcttctacgaccacgtcccg ccgcccaatgtcggcgtccccagccccgacgccatccgtggcccgctgcccttcttcttc aggttcgaccgcctcggcgtcAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAA GGGACGGTGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGtccgagtacgagcactcc tccatcccggccaccatcaagaagatattcaacctcagctccgacttcctcaccaggagg gatgcgtgggcgggcaccttcgagcacctcttcacggacctggacgagccaaGGACGGAT TGCCCGGAGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAA GAAGACGGAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTC AACGGCGACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACG GTGAAGCAGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAG CGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACT ACTGCAACCACCTGCTGCCCTTAG
Protein |
547 aa |
>Os01t0102000-01 Non-specific phospholipase C, Mesocotyl development MWPLSPHRRHLQQHGHSGAMGRRLLLLFLMLAQAPNSNGDSKIKNVVVLALENRSFDHML GWMQRLLGLPIDGLTGAECNPAPGPGPADSLLHCVSPDADLVVPDDPAHAFEDVLEQLLG FRPNDSTGAAASPSDMSGFVRSAVSVSALLTDAVMRGFTPSRLPAFSALASSFAVFDRWF SSIPGPTQPNRLFLYSATSHGAVAHDKWNLLRGYPQRTIFDSLAADALDYRVYFKTIPTT LFYRRLRTVANAARGTFRRYDAAFRDHARRGLLPALSVIEPRYFDLTGTPADDDHPAHDV ANGQRLVKDVYEALRAGPQWNHTLLIITYDEHGGFYDHVPPPNVGVPSPDAIRGPLPFFF RFDRLGVRVPTIMVSPWIRKGTVVGRPPGGPTPTSEYEHSSIPATIKKIFNLSSDFLTRR DAWAGTFEHLFTDLDEPRTDCPETLPEIPPPSSSSSSTKKEDGGWLSDFQRELVQLAAFL NGDYMLSSFAQEYESRMTMTVKQADAYVRRAVKSFLEASKRAKRLGANDSAIVTMRPSLT TATTCCP*
5'UTR
chr01:91469..91521 (- strand) : 53 bp
CDS
chr01:89825..91468 (- strand) : 1644 bp
3'UTR
chr01:89763..89824 (- strand) : 62 bp
FASTA
>Os01t0102000-01 class=Sequence position=chr01:89763..91521 (- strand) ATTTTCTTTT TCTCTAGCTT GTTGTACTTG GTACTCCACA CCACTAGCTA GTAATGTGGC CGCTCTCTCC TCACCGACGG CATCTCCAGC AGCACGGGCA TTCCGGCGCC ATGGGTCGGC GGCTGTTGCT GCTCTTCCTA ATGCTGGCAC AGGCACCCAA TTCCAATGGG GATTCCAAGA TAAAGAACGT GGTGGTGTTG GCGCTGGAGA ACCGGTCGTT CGACCACATG CTGGGGTGGA TGCAGCGGCT GCTGGGCCTC CCCATCGACG GCCTCACCGG CGCAGAGTGC AACCCGGCTC CAGGACCAGG TCCAGCCGAC TCCCTCCTCC ACTGCGTCTC CCCCGACGCC GACCTCGTCG TCCCCGACGA CCCCGCCCAC GCCTTCGAGG ACGTCCTCGA GCAGCTGCTG GGGTTCCGAC CCAATGACTC TACTGGCGCC GCCGCCTCCC CCTCAGACAT GTCGGGCTTC GTCCGCAGCG CCGTCTCCGT GAGCGCGCTC CTGACCGACG CCGTCATGCG GGGGTTCACC CCGTCGCGGC TCCCGGCCTT CTCCGCGCTG GCCTCCTCCT TCGCGGTGTT CGACCGCTGG TTCTCCTCCA TCCCGGGGCC CACGCAGCCC AACCGGCTGT TCCTCTACTC CGCCACCTCC CACGGCGCCG TCGCCCACGA CAAGTGGAAC CTCCTCCGCG GCTACCCGCA GCGCACCATC TTTGACTCCC TCGCCGCCGA CGCCCTCGAC TACCGGGTCT ACTTCAAGAC CATCCCCACC ACCCTCTTCT ACCGCcgcct ccgcaccgtc gccaacgccg cccgcggcac cttccgccgc tacgacgccg ccttccgcga ccacgcccgc aggggcctcc tcccggcgct ctccgtcatc gagccacgct acttcgacct caccggcacg cccgccgacg acgaccaccc ggcgcacgac gtcgccaacg gccagaggct ggtcaaggac gtctacgagg cgctgcgggc gggcccgcag tggaaccaca cactgctcat catcacctac gacgagcacg gcggcttcta cgaccacgtc ccgccgccca atgtcggcgt ccccagcccc gacgccatcc gtggcccgct gcccttcttc ttcaggttcg accgcctcgg cgtcAGGGTG CCCACCATCA TGGTGTCGCC GTGGATCAGG AAAGGGACGG TGGTGGGGAG GCCGCCGGGA GGGCCAACGC CCACGtccga gtacgagcac tcctccatcc cggccaccat caagaagata ttcaacctca gctccgactt cctcaccagg agggatgcgt gggcgggcac cttcgagcac ctcttcacgg acctggacga gccaaGGACG GATTGCCCGG AGACATTGCC GGAGATCCCG CCGCCATCTT CCTCGTCGTC GTCGACCAAG AAAGAAGACG GAGGATGGCT GTCGGACTTC CAGCGCGAGC TGGTGCAGCT GGCGGCCTTC CTCAACGGCG ACTACATGCT GTCAAGCTTC GCACAGGAGT ACGAGTCGAG AATGACGATG ACGGTGAAGC AGGCGGATGC GTATGTGAGG CGAGCCGTCA AAAGTTTCCT GGAGGCCAGC AAGCGGGCCA AACGCTTAGG TGCAAACGAC TCCGCCATTG TAACCATGAG ACCATCCCTC ACTACTGCAA CCACCTGCTG CCCTTAGTTA CCTACTGTAG TACACTAAAC TAGTCTCTTT ATTAATTTAA TTAATTACCT ACCTTAGCT
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