Os01t0103600-01

Locus

Os01g0103600

Description

Similar to sterol-8,7-isomerase.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

Oryzabase Gene Name Synonym(s)

Transcript Evidence

AK102848 (DDBJ, Best hit)

Protein Evidence

NP_001105846.1 (RefSeq)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: sterol metabolic process (GO:0016125)

Cellular Component: endoplasmic reticulum (GO:0005783)

Cellular Component: integral to membrane (GO:0016021)

Molecular Function: cholestenol delta-isomerase activity (GO:0047750)

Functional domain (InterPro)

Emopamil-binding (IPR007905)

Full-length cDNA

J033110C04 (Online Clone Ordering)

Expression Databases

TENOR (Os01t0103600-01)

RiceXPro (AK102848)

Others

KEGG (Os01t0103600-01 (EC:5.3.3.5))

Transcript

3339 bp

>Os01t0103600-01 Similar to sterol-8,7-isomerase.
AGTGCAAAATCTACAAGACCACGATACAAGTAGGTATGGTGGACTACCACATTTTCACTT
CTCTTTCACTTTCCCCTCTCTCTCCCCCCTCTCTTCCTTTCCCCCACCGCAGAGAGCCTG
GCGCGCGGAGACGGCGACGGCGCCGGACCAAGCAGTGGTGGAGCGACGGCGGGGCGACAG
CGCCGAGCGGCGGGATGCGCTCGCCGGCGCACCACCCCCTCCTCTCCCCCCCGAGCGGCG
GGGCTGCTCGGAGCAGCAGGGCGGCGGCGGCATGTCGGCGGCGGGCAGACGACTTGGAGC
GGGAGACGGCGACGGGCGGATGCGAGGCGGCGGTCGGCGCCCTCCTCCCCTGGAGTTCGG
CTGCTTCGCCCCCTCTCCTCTCTCCTCTAGCGGTGGTGTGGGTCCCACTGAGCTGAGGAG
GGCGCGCGGTTGGACGACGAGGCAAAGGAATACTAGTCTTCGCTTTTTTGGGTTGAGGCT
GAATGCCACGTCGGCCCATTGTGAATGCCCTTTAACAAAACAAGGGTTTATGGCTATGGG
ATCTGGCTGAGGCATTGACCTACCTTGGTCCTTGGCAGAGAGAGAGAGAGACTCCCCCTC
ACTCCTTCCCCGACGACCTGCTCGATCCGATCCAATCCGCTCCTCTCCAGTCCAGATCGG
AAGGAAGCCAGGAATGGGGCACCCCCACCCCCACCCTTACGCGCCGGCGGAGCTTCACCT
CCCGGGCTTCGTGCCTCTCCAACTGTCCCAGGCCCAAATCCTCGTGCCCTACCTCGCCAC
CTCCCTCTTCCTCCTCCTCGCCGTCTGGCTCATCTCCGGGAGATGCAGTCGTAGGCTTTC
CGACACCGACCGCTGGCTCATGTGCTGGTGGGCCTTCACCGGCCTCACCCACATTATCAT
CGAGGGAACCTTTGTCTTTGCTCCTAATTTCTTCTCCAACCAAAACCCTTCTTACTTCGA
TGAAGTTTGGAAAGAGTACAGCAAAGGTGACTCCAGATATGTCGCCAGAGACCCTGCTAC
TGTTACAGTTGAAGGAATTACAGCTGTCTTGGAAGGCCCTGCTTCACTCCTTGCTGTGTA
CTCATCTTTTCTTCCATTTCACCTCACCATGCGCACCTTACCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCCATTTCTTACATA
TTTAACGATCTTCTCATTACAAATGCATTTTTCACATGTTTTTCTACCTTTCGTTATACT
ATTGTTTTTCTTTCCTCTTTCGAGTTAACCTTTTGCTAGCCAATCTAGTTATTCCGGAGC
ATCACCTTCTGAATTAACATGTACTAGCCAATTAAGTCGCCTGTTTGTGCGACCATGAGT
AATTCACCTATGATCACATTTTCCCTATCTCATATTGTAATATTATTATCTTTTTTGTAC
AACAAACCGTAGCCCTTTGATTATAACACTGAATCTAGCTTGCCCAAAGTTGTACTCTCT
GGCTTCCAAGTTACCGAAAATGGAACTGAAAATTATACTCTCTGGCTTCCAAATGGATAT
AAGTGAAAACGACTGAAAATTTGTTCGCATACAGAGCTGACTTTAAATTCATATCATAAG
CGGAAATGGAATAATAGGCAATGGAAAAGTATTTTGGTGCCAAACAGATTAAATTCTGTG
TTTTGGACTTGTAATTAGTAAAGGAAGGCAACAGCCATGATTAGAAGGGAATTGTGGAAA
TAGTATTTACAGCCCAAATACTCCTATCTAAATGCAACTCAATCTGGAATTAGAAAAAAA
AATATGTTGGCAAGCTAGGCTCATATTAGAACTTCATGAGCTGACGTGCTTGTCCAGGAA
AGTGTTTTCAAGATTACTAAAGCTGGTATTAGCATATCCAACCGCAGCATACTGTTTTAC
TGCCCTAAGTACATCTTGTTTCAGTGTCTTTCTTTGTTGAAGGTTTCCAGAAATCATACA
AAGCCACATGTGCATATAGTTCTGCATATAGTTCTCCTGTCGTGTACTAATTGAAAATGA
GTTACTTTCATAGGAAAAAAAACTGGGGAATCGATAATAAAGAACTAAAACTCCTTTCAG
CAAATATATGCAAAATTGAATTCCACCAAACCAAGTATTAACTGAAGCATTTGCTGGATC
TGCATATATGCAAACAAAACATTAAGGCTTAAATAGGAACTTTGTTTGCTGGAAACAGAA
AGAGATGGTAAATCGAAAGGAAAGTTAGAATCATTAACAGAGCATAAAAAATATAGTCAA
GCCAAAACGAATCATGCCTCCTATCTAAGCCCCCATGGACTCAACCTTAATTTATGAACT
TCTATAATTCAGTCATAGTTTTGCAGTAAATTCAGTCATCTTGCTGTACTTCTTTCCAAT
TCATCCCTATAGGTCAACATCTCAATTGACAGTTGCATATTCATTCCAAATTGTTCAGTC
ACAGTGAGTCACCATATCCCTATAGGTCAACATCTTACTTGGACAGTTGCATATTCATTC
CAAATTGTTCAGTCACCGTGAGTCAATTGAGCAACTTTTTACTGTAACACATTGAAGGAG
GCAGCACTAACCTTGCAATGAAGTCATGTGCTTATGACCTCACAGGGTCTCTATCTCATG
AGCTGATGGTACCGTAACGGGCATGCCATTTTGCTATTTGCTCATTTCAATCTAAACTGG
AAAGAAGCAATTTTTTATTGGCATCCACGATTCCAGGGGTGTCTCCCTGCCGCTGCCACC
TTCTCCACTCCCATACCTGATGCGTGGGAGCAGGCAAAAGTGCAGGGATAGGGAGGAAGA
AGTGGAAGATGGCGGCGTCGCATCATCCCACTCTGTTGCTCCCAGAGGAAAATTGTTGAG
CTGCTCAGCCAGTGAAAGAGGATGCATGTGGTACCTCAGCCTCGCCGCCACCCATCTTCA
CCGTCGGTATGGTTTGGATCCAGCGATTCCTGAGCTTGCGGTGGCTTGCCCCCGAGCTCA
GTGCGGGGTGCTTGAATCTGATGAGGAACGCGGTGCGGCCTGGATGGAGCGGCGGCCTCG
ATTTGGCCACGGTGGGGATGAGGAGCCAACTTCGGAGGCGGtgggggataggaggaagat
gcggcagctgggatgacgagggggtttggagtggaggcggtggtgtggcgcagcacgcaa
aggagaggaggggtcgtgctttggtagatggggagggaggagggggTAAATATAAAAGAA
TCGATTCTAAGGGTATGGAAGGATCTAGTTTTGGTATAAGTTTCATGAAGGATGTTTATG
TTCTTTATCCATTTGGGGAATCTGATGGTTCTTATTGGC

CDS

615 bp

>Os01t0103600-01 Similar to sterol-8,7-isomerase.
ATGGGGCACCCCCACCCCCACCCTTACGCGCCGGCGGAGCTTCACCTCCCGGGCTTCGTG
CCTCTCCAACTGTCCCAGGCCCAAATCCTCGTGCCCTACCTCGCCACCTCCCTCTTCCTC
CTCCTCGCCGTCTGGCTCATCTCCGGGAGATGCAGTCGTAGGCTTTCCGACACCGACCGC
TGGCTCATGTGCTGGTGGGCCTTCACCGGCCTCACCCACATTATCATCGAGGGAACCTTT
GTCTTTGCTCCTAATTTCTTCTCCAACCAAAACCCTTCTTACTTCGATGAAGTTTGGAAA
GAGTACAGCAAAGGTGACTCCAGATATGTCGCCAGAGACCCTGCTACTGTTACAGTTGAA
GGAATTACAGCTGTCTTGGAAGGCCCTGCTTCACTCCTTGCTGTGTACTCATCTTTTCTT
CCATTTCACCTCACCATGCGCACCTTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCCATTTCTTACATATTTAACGATCTTC
TCATTACAAATGCATTTTTCACATGTTTTTCTACCTTTCGTTATACTATTGTTTTTCTTT
CCTCTTTCGAGTTAA

Protein

204 aa

>Os01t0103600-01 Similar to sterol-8,7-isomerase.
MGHPHPHPYAPAELHLPGFVPLQLSQAQILVPYLATSLFLLLAVWLISGRCSRRLSDTDR
WLMCWWAFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGDSRYVARDPATVTVE
GITAVLEGPASLLAVYSSFLPFHLTMRTLPLSLSLSLSLSLSLSLSLSLSFPFLTYLTIF
SLQMHFSHVFLPFVILLFFFPLSS*

5'UTR

chr01:190232..190904 (- strand) : 673 bp

CDS

chr01:190087..190231 (- strand) : 145 bp

chr01:189841..189990 (- strand) : 150 bp

chr01:189396..189715 (- strand) : 320 bp

3'UTR

chr01:187345..189395 (- strand) : 2051 bp

FASTA

>Os01t0103600-01 class=Sequence position=chr01:187345..190904 (- strand)
AGTGCAAAAT CTACAAGACC ACGATACAAG TAGGTATGGT GGACTACCAC ATTTTCACTT CTCTTTCACT TTCCCCTCTC
TCTCCCCCCT CTCTTCCTTT CCCCCACCGC AGAGAGCCTG GCGCGCGGAG ACGGCGACGG CGCCGGACCA AGCAGTGGTG
GAGCGACGGC GGGGCGACAG CGCCGAGCGG CGGGATGCGC TCGCCGGCGC ACCACCCCCT CCTCTCCCCC CCGAGCGGCG
GGGCTGCTCG GAGCAGCAGG GCGGCGGCGG CATGTCGGCG GCGGGCAGAC GACTTGGAGC GGGAGACGGC GACGGGCGGA
TGCGAGGCGG CGGTCGGCGC CCTCCTCCCC TGGAGTTCGG CTGCTTCGCC CCCTCTCCTC TCTCCTCTAG CGGTGGTGTG
GGTCCCACTG AGCTGAGGAG GGCGCGCGGT TGGACGACGA GGCAAAGGAA TACTAGTCTT CGCTTTTTTG GGTTGAGGCT
GAATGCCACG TCGGCCCATT GTGAATGCCC TTTAACAAAA CAAGGGTTTA TGGCTATGGG ATCTGGCTGA GGCATTGACC
TACCTTGGTC CTTGGCAGAG AGAGAGAGAG ACTCCCCCTC ACTCCTTCCC CGACGACCTG CTCGATCCGA TCCAATCCGC
TCCTCTCCAG TCCAGATCGG AAGGAAGCCA GGAATGGGGC ACCCCCACCC CCACCCTTAC GCGCCGGCGG AGCTTCACCT
CCCGGGCTTC GTGCCTCTCC AACTGTCCCA GGCCCAAATC CTCGTGCCCT ACCTCGCCAC CTCCCTCTTC CTCCTCCTCG
CCGTCTGGCT CATCTCCGGT ATTCCTTTCT TCCTTCCTTC TCCTCTCGGC TCGCTAAATT CCAACATCTC TTTGCTCAAT
CTTCTTTGCT TCCATTTGCT TTGCTTTGCT GCAGGGAGAT GCAGTCGTAG GCTTTCCGAC ACCGACCGCT GGCTCATGTG
CTGGTGGGCC TTCACCGGCC TCACCCACAT TATCATCGAG GGAACCTTTG TCTTTGCTCC TAATTTCTTC TCCAACCAAA
ACCCTTCTTA CTTCGATGAA GTTTGTAAGC CTCCTTTTCT TTTCTAACTC CACTATCATT CATCTCCCTT CTATTTACTA
TTATCTTATT GGATTATTAC GCACTAGCTA CTAACAATAA TCACCATCCT CCTTTCCTTT CCTTTCCAGG GAAAGAGTAC
AGCAAAGGTG ACTCCAGATA TGTCGCCAGA GACCCTGCTA CTGTTACAGT TGAAGGAATT ACAGCTGTCT TGGAAGGCCC
TGCTTCACTC CTTGCTGTGT ACTCATCTTT TCTTCCATTT CACCTCACCA TGCGCACCTT ACCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTTTTCCA TTTCTTACAT ATTTAACGAT CTTCTCATTA
CAAATGCATT TTTCACATGT TTTTCTACCT TTCGTTATAC TATTGTTTTT CTTTCCTCTT TCGAGTTAAC CTTTTGCTAG
CCAATCTAGT TATTCCGGAG CATCACCTTC TGAATTAACA TGTACTAGCC AATTAAGTCG CCTGTTTGTG CGACCATGAG
TAATTCACCT ATGATCACAT TTTCCCTATC TCATATTGTA ATATTATTAT CTTTTTTGTA CAACAAACCG TAGCCCTTTG
ATTATAACAC TGAATCTAGC TTGCCCAAAG TTGTACTCTC TGGCTTCCAA GTTACCGAAA ATGGAACTGA AAATTATACT
CTCTGGCTTC CAAATGGATA TAAGTGAAAA CGACTGAAAA TTTGTTCGCA TACAGAGCTG ACTTTAAATT CATATCATAA
GCGGAAATGG AATAATAGGC AATGGAAAAG TATTTTGGTG CCAAACAGAT TAAATTCTGT GTTTTGGACT TGTAATTAGT
AAAGGAAGGC AACAGCCATG ATTAGAAGGG AATTGTGGAA ATAGTATTTA CAGCCCAAAT ACTCCTATCT AAATGCAACT
CAATCTGGAA TTAGAAAAAA AAATATGTTG GCAAGCTAGG CTCATATTAG AACTTCATGA GCTGACGTGC TTGTCCAGGA
AAGTGTTTTC AAGATTACTA AAGCTGGTAT TAGCATATCC AACCGCAGCA TACTGTTTTA CTGCCCTAAG TACATCTTGT
TTCAGTGTCT TTCTTTGTTG AAGGTTTCCA GAAATCATAC AAAGCCACAT GTGCATATAG TTCTGCATAT AGTTCTCCTG
TCGTGTACTA ATTGAAAATG AGTTACTTTC ATAGGAAAAA AAACTGGGGA ATCGATAATA AAGAACTAAA ACTCCTTTCA
GCAAATATAT GCAAAATTGA ATTCCACCAA ACCAAGTATT AACTGAAGCA TTTGCTGGAT CTGCATATAT GCAAACAAAA
CATTAAGGCT TAAATAGGAA CTTTGTTTGC TGGAAACAGA AAGAGATGGT AAATCGAAAG GAAAGTTAGA ATCATTAACA
GAGCATAAAA AATATAGTCA AGCCAAAACG AATCATGCCT CCTATCTAAG CCCCCATGGA CTCAACCTTA ATTTATGAAC
TTCTATAATT CAGTCATAGT TTTGCAGTAA ATTCAGTCAT CTTGCTGTAC TTCTTTCCAA TTCATCCCTA TAGGTCAACA
TCTCAATTGA CAGTTGCATA TTCATTCCAA ATTGTTCAGT CACAGTGAGT CACCATATCC CTATAGGTCA ACATCTTACT
TGGACAGTTG CATATTCATT CCAAATTGTT CAGTCACCGT GAGTCAATTG AGCAACTTTT TACTGTAACA CATTGAAGGA
GGCAGCACTA ACCTTGCAAT GAAGTCATGT GCTTATGACC TCACAGGGTC TCTATCTCAT GAGCTGATGG TACCGTAACG
GGCATGCCAT TTTGCTATTT GCTCATTTCA ATCTAAACTG GAAAGAAGCA ATTTTTTATT GGCATCCACG ATTCCAGGGG
TGTCTCCCTG CCGCTGCCAC CTTCTCCACT CCCATACCTG ATGCGTGGGA GCAGGCAAAA GTGCAGGGAT AGGGAGGAAG
AAGTGGAAGA TGGCGGCGTC GCATCATCCC ACTCTGTTGC TCCCAGAGGA AAATTGTTGA GCTGCTCAGC CAGTGAAAGA
GGATGCATGT GGTACCTCAG CCTCGCCGCC ACCCATCTTC ACCGTCGGTA TGGTTTGGAT CCAGCGATTC CTGAGCTTGC
GGTGGCTTGC CCCCGAGCTC AGTGCGGGGT GCTTGAATCT GATGAGGAAC GCGGTGCGGC CTGGATGGAG CGGCGGCCTC
GATTTGGCCA CGGTGGGGAT GAGGAGCCAA CTTCGGAGGC GGtgggggat aggaggaaga tgcggcagct gggatgacga
gggggtttgg agtggaggcg gtggtgtggc gcagcacgca aaggagagga ggggtcgtgc tttggtagat ggggagggag
gagggggTAA ATATAAAAGA ATCGATTCTA AGGGTATGGA AGGATCTAGT TTTGGTATAA GTTTCATGAA GGATGTTTAT
GTTCTTTATC CATTTGGGGA ATCTGATGGT TCTTATTGGC 

Locus: Os01g0103600

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Locus: Os01g0103600

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