Locus

Os01g0103600

Description

Emopamil-binding family protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

Oryzabase Gene Name Synonym(s)

Transcript Evidence

AK059848 (DDBJ, Best hit)

Protein Evidence

B6TIR9 (UniProt)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: sterol metabolic process (GO:0016125)

Cellular Component: endoplasmic reticulum (GO:0005783)

Cellular Component: integral to membrane (GO:0016021)

Molecular Function: cholestenol delta-isomerase activity (GO:0047750)

Functional domain (InterPro)

Emopamil-binding (IPR007905)

Full-length cDNA

006-206-F06 (Online Clone Ordering)

Expression Databases

TENOR (Os01t0103600-02)

RiceXPro (AK059848)

Others

KEGG (Os01t0103600-02 (EC:5.3.3.5))

Transcript

957 bp

>Os01t0103600-02 Emopamil-binding family protein.
CTCTCCAGTCCAGATCGGAAGGAAGCCAGGAATGGGGCACCCCCACCCCCACCCTTACGC
GCCGGCGGAGCTTCACCTCCCGGGCTTCGTGCCTCTCCAACTGTCCCAGGCCCAAATCCT
CGTGCCCTACCTCGCCACCTCCCTCTTCCTCCTCCTCGCCGTCTGGCTCATCTCCGGGAG
ATGCAGTCGTAGGCTTTCCGACACCGACCGCTGGCTCATGTGCTGGTGGGCCTTCACCGG
CCTCACCCACATTATCATCGAGGGAACCTTTGTCTTTGCTCCTAATTTCTTCTCCAACCA
AAACCCTTCTTACTTCGATGAAGTTTGGAAAGAGTACAGCAAAGGTGACTCCAGATATGT
CGCCAGAGACCCTGCTACTGTTACAGTTGAAGGAATTACAGCTGTCTTGGAAGGCCCTGC
TTCACTCCTTGCTGTCTATGCCATCGCATCGGGCAAGTCCTACAGCCATATCCTCCAGTT
CACTGTCTGTCTTGGTCAGCTCTATGGATGCCTGGTGTACTTTATTACAGCCTACTTGGA
TGGCTTCAACTTCTGGACTAGCCCGTTCTACTTCTGGGCTTATTTCATTGGTGCAAACAG
CTCGTGGGTTGTTATACCAACTATGATCGCCATAAGGAGCTGGAAGAAGATTTGTGCAGC
ATTTCAAGGTGAAAAGGTGAAGACTAAATAGGCAAAGGGTGCACCTTAGTCACAGTTTGG
TTGGAAATTAATAGACATTTGTGCTATGAACAACATCATTGTTCCTGCAATTGAAACCCT
TGTGTTACTGAAAAATTGCATTGTACCCTTGGAGGGAACATCAGTGTTAATTGGATGTGA
CTTTATGCAGCTATTATGTATTGCTGCAAAAGAAATTGGGTTTTGTTTATCCTCTATCAT
TCAAGCTCGCTCTTCTTTACCCTTGAAGAAATAAAAGGGCAGGGAGTTGCCATTTTG

CDS

660 bp

>Os01t0103600-02 Emopamil-binding family protein.
ATGGGGCACCCCCACCCCCACCCTTACGCGCCGGCGGAGCTTCACCTCCCGGGCTTCGTG
CCTCTCCAACTGTCCCAGGCCCAAATCCTCGTGCCCTACCTCGCCACCTCCCTCTTCCTC
CTCCTCGCCGTCTGGCTCATCTCCGGGAGATGCAGTCGTAGGCTTTCCGACACCGACCGC
TGGCTCATGTGCTGGTGGGCCTTCACCGGCCTCACCCACATTATCATCGAGGGAACCTTT
GTCTTTGCTCCTAATTTCTTCTCCAACCAAAACCCTTCTTACTTCGATGAAGTTTGGAAA
GAGTACAGCAAAGGTGACTCCAGATATGTCGCCAGAGACCCTGCTACTGTTACAGTTGAA
GGAATTACAGCTGTCTTGGAAGGCCCTGCTTCACTCCTTGCTGTCTATGCCATCGCATCG
GGCAAGTCCTACAGCCATATCCTCCAGTTCACTGTCTGTCTTGGTCAGCTCTATGGATGC
CTGGTGTACTTTATTACAGCCTACTTGGATGGCTTCAACTTCTGGACTAGCCCGTTCTAC
TTCTGGGCTTATTTCATTGGTGCAAACAGCTCGTGGGTTGTTATACCAACTATGATCGCC
ATAAGGAGCTGGAAGAAGATTTGTGCAGCATTTCAAGGTGAAAAGGTGAAGACTAAATAG

Protein

219 aa

>Os01t0103600-02 Emopamil-binding family protein.
MGHPHPHPYAPAELHLPGFVPLQLSQAQILVPYLATSLFLLLAVWLISGRCSRRLSDTDR
WLMCWWAFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGDSRYVARDPATVTVE
GITAVLEGPASLLAVYAIASGKSYSHILQFTVCLGQLYGCLVYFITAYLDGFNFWTSPFY
FWAYFIGANSSWVVIPTMIAIRSWKKICAAFQGEKVKTK*

5'UTR

chr01:190232..190262 (- strand) : 31 bp

CDS

chr01:190087..190231 (- strand) : 145 bp

chr01:189841..189990 (- strand) : 150 bp

chr01:189607..189715 (- strand) : 109 bp

chr01:186516..186771 (- strand) : 256 bp

3'UTR

chr01:186250..186515 (- strand) : 266 bp

FASTA

>Os01t0103600-02 class=Sequence position=chr01:186250..190262 (- strand)
CTCTCCAGTC CAGATCGGAA GGAAGCCAGG AATGGGGCAC CCCCACCCCC ACCCTTACGC GCCGGCGGAG CTTCACCTCC
CGGGCTTCGT GCCTCTCCAA CTGTCCCAGG CCCAAATCCT CGTGCCCTAC CTCGCCACCT CCCTCTTCCT CCTCCTCGCC
GTCTGGCTCA TCTCCGGTAT TCCTTTCTTC CTTCCTTCTC CTCTCGGCTC GCTAAATTCC AACATCTCTT TGCTCAATCT
TCTTTGCTTC CATTTGCTTT GCTTTGCTGC AGGGAGATGC AGTCGTAGGC TTTCCGACAC CGACCGCTGG CTCATGTGCT
GGTGGGCCTT CACCGGCCTC ACCCACATTA TCATCGAGGG AACCTTTGTC TTTGCTCCTA ATTTCTTCTC CAACCAAAAC
CCTTCTTACT TCGATGAAGT TTGTAAGCCT CCTTTTCTTT TCTAACTCCA CTATCATTCA TCTCCCTTCT ATTTACTATT
ATCTTATTGG ATTATTACGC ACTAGCTACT AACAATAATC ACCATCCTCC TTTCCTTTCC TTTCCAGGGA AAGAGTACAG
CAAAGGTGAC TCCAGATATG TCGCCAGAGA CCCTGCTACT GTTACAGTTG AAGGAATTAC AGCTGTCTTG GAAGGCCCTG
CTTCACTCCT TGCTGTGTAC TCATCTTTTC TTCCATTTCA CCTCACCATG CGCACCTTAC CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTTTTCCATT TCTTACATAT TTAACGATCT TCTCATTACA
AATGCATTTT TCACATGTTT TTCTACCTTT CGTTATACTA TTGTTTTTCT TTCCTCTTTC GAGTTAACCT TTTGCTAGCC
AATCTAGTTA TTCCGGAGCA TCACCTTCTG AATTAACATG TACTAGCCAA TTAAGTCGCC TGTTTGTGCG ACCATGAGTA
ATTCACCTAT GATCACATTT TCCCTATCTC ATATTGTAAT ATTATTATCT TTTTTGTACA ACAAACCGTA GCCCTTTGAT
TATAACACTG AATCTAGCTT GCCCAAAGTT GTACTCTCTG GCTTCCAAGT TACCGAAAAT GGAACTGAAA ATTATACTCT
CTGGCTTCCA AATGGATATA AGTGAAAACG ACTGAAAATT TGTTCGCATA CAGAGCTGAC TTTAAATTCA TATCATAAGC
GGAAATGGAA TAATAGGCAA TGGAAAAGTA TTTTGGTGCC AAACAGATTA AATTCTGTGT TTTGGACTTG TAATTAGTAA
AGGAAGGCAA CAGCCATGAT TAGAAGGGAA TTGTGGAAAT AGTATTTACA GCCCAAATAC TCCTATCTAA ATGCAACTCA
ATCTGGAATT AGAAAAAAAA ATATGTTGGC AAGCTAGGCT CATATTAGAA CTTCATGAGC TGACGTGCTT GTCCAGGAAA
GTGTTTTCAA GATTACTAAA GCTGGTATTA GCATATCCAA CCGCAGCATA CTGTTTTACT GCCCTAAGTA CATCTTGTTT
CAGTGTCTTT CTTTGTTGAA GGTTTCCAGA AATCATACAA AGCCACATGT GCATATAGTT CTGCATATAG TTCTCCTGTC
GTGTACTAAT TGAAAATGAG TTACTTTCAT AGGAAAAAAA ACTGGGGAAT CGATAATAAA GAACTAAAAC TCCTTTCAGC
AAATATATGC AAAATTGAAT TCCACCAAAC CAAGTATTAA CTGAAGCATT TGCTGGATCT GCATATATGC AAACAAAACA
TTAAGGCTTA AATAGGAACT TTGTTTGCTG GAAACAGAAA GAGATGGTAA ATCGAAAGGA AAGTTAGAAT CATTAACAGA
GCATAAAAAA TATAGTCAAG CCAAAACGAA TCATGCCTCC TATCTAAGCC CCCATGGACT CAACCTTAAT TTATGAACTT
CTATAATTCA GTCATAGTTT TGCAGTAAAT TCAGTCATCT TGCTGTACTT CTTTCCAATT CATCCCTATA GGTCAACATC
TCAATTGACA GTTGCATATT CATTCCAAAT TGTTCAGTCA CAGTGAGTCA CCATATCCCT ATAGGTCAAC ATCTTACTTG
GACAGTTGCA TATTCATTCC AAATTGTTCA GTCACCGTGA GTCAATTGAG CAACTTTTTA CTGTAACACA TTGAAGGAGG
CAGCACTAAC CTTGCAATGA AGTCATGTGC TTATGACCTC ACAGGGTCTC TATCTCATGA GCTGATGGTA CCGTAACGGG
CATGCCATTT TGCTATTTGC TCATTTCAAT CTAAACTGGA AAGAAGCAAT TTTTTATTGG CATCCACGAT TCCAGGGGTG
TCTCCCTGCC GCTGCCACCT TCTCCACTCC CATACCTGAT GCGTGGGAGC AGGCAAAAGT GCAGGGATAG GGAGGAAGAA
GTGGAAGATG GCGGCGTCGC ATCATCCCAC TCTGTTGCTC CCAGAGGAAA ATTGTTGAGC TGCTCAGCCA GTGAAAGAGG
ATGCATGTGG TACCTCAGCC TCGCCGCCAC CCATCTTCAC CGTCGGTATG GTTTGGATCC AGCGATTCCT GAGCTTGCGG
TGGCTTGCCC CCGAGCTCAG TGCGGGGTGC TTGAATCTGA TGAGGAACGC GGTGCGGCCT GGATGGAGCG GCGGCCTCGA
TTTGGCCACG GTGGGGATGA GGAGCCAACT TCGGAGGCGG tgggggatag gaggaagatg cggcagctgg gatgacgagg
gggtttggag tggaggcggt ggtgtggcgc agcacgcaaa ggagaggagg ggtcgtgctt tggtagatgg ggagggagga
gggggTAAAT ATAAAAGAAT CGATTCTAAG GGTATGGAAG GATCTAGTTT TGGTATAAGT TTCATGAAGG ATGTTTATGT
TCTTTATCCA TTTGGGGAAT CTGATGGTTC TTATTGGCTC ATGAAAATAT CGAATGGTTG AAGTTTTGTT GATGACGTGG
ATGCGTTAAC TTTGCAAGAA AGGATTCATC TTTCATTTAT TTAGATGTAT CTGCATCCAT CATACATGCT CCAAGTGAAT
GCATTTTTTT TACATCATGC CAATCGCATG TTGCATTTGC CACAAGACAT AAATCGTCGT GGACAGCAGA ATCCAATGTT
CATGGGCTTT ATGGAGTAGC TTTTCTTGTC TTCAACTAAA CAATCCTGAT TGATTGATGA TTGGACTGGA TCCTCATAAG
GGAAGTAGCG GTGCTATAGG AATTGTATGT GTTTGATGCC TATAAAATCT ATCCACAGAA TATTTGTGTT CTCCTTTTTG
TTAGTTTACA CATTGGATTG ACCTGTCTGC AAGCGTCAAT ATCAATATGT AACTGGTTAT TAAGCCAGAC TATTCACTAT
TGTACATCCT GCATTCCATG TACTAGTTGA TAGGAGTTTC TTTTGCCCCC TAGACAGTTG ATATGAGTAT AATATAGCCT
TTTGTGGTTT ATAGTTTCCA CCTGACCTGA CAAAAAGTTT GCTGCTTGCA GCTATGCCAT CGCATCGGGC AAGTCCTACA
GCCATATCCT CCAGTTCACT GTCTGTCTTG GTCAGCTCTA TGGATGCCTG GTGTACTTTA TTACAGCCTA CTTGGATGGC
TTCAACTTCT GGACTAGCCC GTTCTACTTC TGGGCTTATT TCATTGGTGC AAACAGCTCG TGGGTTGTTA TACCAACTAT
GATCGCCATA AGGAGCTGGA AGAAGATTTG TGCAGCATTT CAAGGTGAAA AGGTGAAGAC TAAATAGGCA AAGGGTGCAC
CTTAGTCACA GTTTGGTTGG AAATTAATAG ACATTTGTGC TATGAACAAC ATCATTGTTC CTGCAATTGA AACCCTTGTG
TTACTGAAAA ATTGCATTGT ACCCTTGGAG GGAACATCAG TGTTAATTGG ATGTGACTTT ATGCAGCTAT TATGTATTGC
TGCAAAAGAA ATTGGGTTTT GTTTATCCTC TATCATTCAA GCTCGCTCTT CTTTACCCTT GAAGAAATAA AAGGGCAGGG
AGTTGCCATT TTG

Locus: Os01g0103600

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

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Locus: Os01g0103600

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

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