Locus
Os01g0883800
Description
Similar to GA C20oxidase2.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
SD1
CGSNL Gene Name
SEMIDWARF 1
Oryzabase Gene Symbol Synonym(s)
sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1, SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
Oryzabase Gene Name Synonym(s)
dee-geo-woo-gen dwarf(sd1-d), green revolution gene, semidwarf-1, GA C20oxidase2, semidwarf-1, reimei dwarf(sd1-r), Calrose76(sd1-3), Jikkoku(sd1-2). rice GA 20-oxidase2, GA 20-oxidase 2, Gibberellin 20 oxidase 2, Gibberellin C-20 oxidase 2, GA 20-oxidase 2, Protein semidwarf-1, semi-dwarf1
Transcript Evidence
CT834906 (DDBJ, Best hit)
Protein Evidence
B6F2D9 (UniProt)
Literature
Note
- Exon-intron structures, exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
Gene Ontology (GO)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
Functional domain (InterPro)
Oxoglutarate/iron-dependent oxygenase (IPR005123)
Expression Databases
TENOR (Os01t0883800-01)
Others
Oryzabase (470)
Transcript |
1232 bp |
>Os01t0883800-01 Similar to GA C20oxidase2. CACACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGC TCACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACGCCACCACAGCCGCACCAA CCACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGGCGGCGGTG TGCGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCG AGGCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTgctccgcgac ggcgacgccgaggggctgcgccgcgccgcggcgcaggtggccgccgcgtgcgccacgcac gggttcttccaggtTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCC TGGAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCT CAATCATGCGGTGCAACTACTACCCGCCAtgcccggagccggagcggacgctcggcacgg gcccgcactgcgaccccaccgccctcaccatcctcctccaggacgacgtcggcggcctcg aggtcctcgtcgacggcgaatggcgccccgtcagccccGTCCCCGGCGCCATGGTCATCA ACATCGGCGACACCTTCATGGCGCTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGG CGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTGCCCGCGGGAGG ACAGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACCT GGGCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACG CCTTCACGCGCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGG CGGCCAGCTGATCGCCGAACGGAACGAAACGGAACGAACAGAAGCCGATTTTTGGCGGGG CCCACGCCCACGTGAGGCCCCACGTGGACAGTGGGCCCGGGCGGAGGTGGCACCCACGTG GACCGCGGGCCCCGCGCCGCCTTCCAATTTTGGACCCTACCGCTGTACATATTCATATAT TGCAAGAAGAAGCAAAACGTACGTGTGGGTTGGGTTGGGCTTCTCTCTATTACTAAAAAA AATATAATGGAACGACGGATGAATGGATGCTT
CDS |
969 bp |
>Os01t0883800-01 Similar to GA C20oxidase2. CACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGCTC ACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACGCCACCACAGCCGCACCAACC ACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGGCGGCGGTGTG CGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCGAG GCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTgctccgcgacgg cgacgccgaggggctgcgccgcgccgcggcgcaggtggccgccgcgtgcgccacgcacgg gttcttccaggtTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCCTG GAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCTCA ATCATGCGGTGCAACTACTACCCGCCAtgcccggagccggagcggacgctcggcacgggc ccgcactgcgaccccaccgccctcaccatcctcctccaggacgacgtcggcggcctcgag gtcctcgtcgacggcgaatggcgccccgtcagccccGTCCCCGGCGCCATGGTCATCAAC ATCGGCGACACCTTCATGGCGCTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGGCG GTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTGCCCGCGGGAGGAC AGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACCTGG GCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACGCC TTCACGCGCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGGCG GCCAGCTGA
Protein |
323 aa |
>Os01t0883800-01 Similar to GA C20oxidase2. HTHTLTLTHALNSLPLNTALTSHLQSHGGRAPHATTAAPTTAHGLHRRLWHCRPGGGGGV RPEDGAQDPGAIRVAERRREAGVGGGAGHARGRRGRAPRRRRRGAAPRRGAGGRRVRHAR VLPGYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTG PHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRA VVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTRTLDA FTRWLAPPAADAAATAQVEAAS*
5'UTR
chr01:38382385..38382386 (+ strand) : 2 bp
CDS
chr01:38382387..38382758 (+ strand) : 372 bp
chr01:38383141..38383446 (+ strand) : 306 bp
chr01:38384918..38385208 (+ strand) : 291 bp
3'UTR
chr01:38385209..38385469 (+ strand) : 261 bp
FASTA
>Os01t0883800-01 class=Sequence position=chr01:38382385..38385469 (+ strand) CACACACACA CACACTCACA CTCACACACG CTCTCAACTC ACTCCCGCTC AACACAGCGC TCACTTCTCA TCTCCAATCT CATGGTGGCC GAGCACCCCA CGCCACCACA GCCGCACCAA CCACCGCCCA TGGACTCCAC CGCCGGCTCT GGCATTGCCG CCCCGGCGGC GGCGGCGGTG TGCGACCTGA GGATGGAGCC CAAGATCCCG GAGCCATTCG TGTGGCCGAA CGGCGACGCG AGGCCGGCGT CGGCGGCGGA GCTGGACATG CCCGTGGTCG ACGTGGGCGT gctccgcgac ggcgacgccg aggggctgcg ccgcgccgcg gcgcaggtgg ccgccgcgtg cgccacgcac gggttcttcc aggtgtccga gcacggcgtc gacgccgctc tggcgcgcgc cgcgctcgac ggcgccagcg acttcttccg cctcccgctc gccgagaagc gccgcgcgcg ccgcgtcccg ggcaccgtgt ccggcTACAC CAGCGCCCAC GCCGACCGCT TCGCCTCCAA GCTCCCATGG AAGGAGACCC TCTCCTTCGG CTTCCACGAC CGCGCCGCCG CCCCCGTCGT CGCCGACTAC TTCTCCAGCA CCCTCGGCCC CGACTTCGCG CCAATGGGGT AATTAAAACG ATGGTGGACG ACATTGCATT TCAAATTCAA AACAAATTCA AAACACACCG ACCGAGATTA TGCTGAATTC AAACGCGTTT GTGCGCGCAG GAGGGTGTAC CAGAAGTACT GCGAGGAGAT GAAGGAGCTG TCGCTGACGA TCATGGAACT CCTGGAGCTG AGCCTGGGCG TGGAGCGAGG CTACTACAGG GAGTTCTTCG CGGACAGCAG CTCAATCATG CGGTGCAACT ACTACCCGCC Atgcccggag ccggagcgga cgctcggcac gggcccgcac tgcgacccca ccgccctcac catcctcctc caggacgacg tcggcggcct cgaggtcctc gtcgacggcg aatggcgccc cgtcagcccc GTCCCCGGCG CCATGGTCAT CAACATCGGC GACACCTTCA TGGTAAACCA TCTCCTATTC TCCTCTCCTC TGTTCTCCTC TGCTTCGAAG CAACAGAACA AGTAATTCAA GCTTTTTTTT CTCTCTCGCG CGAAATTGAC GAGAAAAATA AGATCGTGGT AGGGGCGGGG CTTTCAGCTG AAAGCGGGAA GAAACCGACC TGACGTGATT TCTCTGTTCC AATCACAAAC AATGGAATGC CCCACTCCTC CATGTGTTAT GATTTATCTC ACATCTTATA GTTAATAGGA GTAAGTAACA AGCTACTTTt ttcatattat agttcgtttg attttttttt tttaaagttt ttttagtttt atccaaattt attgaaaaac ttagcaacgt ttataatacc aaattagtct catttagttt aatattgtat atattttgat aatatattta tgttatatta aaaatattac tatatttttc tataaacatt attaaaaGCC ATTTATAATA TAAAATGGAA GGAGTAATTA ATATGGATCT CCCCCGACAT GAGAATATTT TCCGATGGTG TGACGACGCC ATGTAAGCTT CGGTGGGCCT GGACGGCCAG AGGTGCCAAC AGCCACGTCC AACAACCCCT GGGTCCCCCC CTAACACTCC AAACAGTAGT GAGTAGTGTC TCGTCGCGTT TTAGTATTTG ATGACAAACA AAGTGTGAGT TGAGTTAGCC ACCACCAACT TGCACACGAG CACATACATT TGTGTCCATT CTCGCCAGTC ACTTCCATCT CTAGTCCTAA CTCCTATCTA GCGATGTAAG CGGATAATTT CATCATCCGT ATATAAACCT GTTTGTTATA GTTAATTTCC TATATAATAC TATAACAGTA TACATTTTAA AAGAAAACAA AATTAGGATA AACAGGCCCT GCTCCTATCC ATCCATGGCA CTTGGAAGGA CCAGACTCGG TCATGCCATG CCAAGCCAAG ATATGGGTTA TGGAAGAGTA GAGAAGAGGA GAGATGAGAG ATAAGCATGC GTTCTCCTCC TCGTTGGATG TGTATTTTGG AGGGATTTGT GTAGTAGTAG CAGCGGCGCC GCGGGGACGG ATGCGGATGG TGGCGCTTTC GGTGGCGTTT TCCCGGGGGG GTTTTGGTTT GGCGCTTGGG GGGGATGGCA TGGCGCGGCG TGCGGCTGCA CGCCACACAC ACGCGCGCGC ACGCACGTAC GTCGTCGTCG CCGCGGGCGG ACGGTAGCTT AGGGTGGTGT GTTCCGCGCG CGGGCGCGGA TTGTTCCATG CCGATCGATT TGGCGCCACC CTCGCCGCGG CTCTTGTCGC GTCGTGCGCC TCTCTCGCGC GGTTTGTCCT TGTCGCGTTG CTCAGCCGGC GACGGGGGCA CGGACATTGG CGATGTAGCC CTGCACGTGT CGGCCTCTCC GTTGATGAAT GATGATGTAT GTATGTATTT TTTTTTGTCT GAAGGAATTT GTGGGGAATT GTTGTGTGTG CAGGCGCTGT CGAACGGGAG GTATAAGAGC TGCCTGCACA GGGCGGTGGT GAACCAGCGG CGGGAGCGGC GGTCGCTGGC GTTCTTCCTG TGCCCGCGGG AGGACAGGGT GGTGCGGCCG CCGCCGAGCG CCGCCACGCC GCAGCACTAC CCGGACTTCA CCTGGGCCGA CCTCATGCGC TTCACGCAGC GCCACTACCG CGCCGACACC CGCACGCTCG ACGCCTTCAC GCGCTGGCTC GCGCCGCCGG CCGCCGACGC CGCCGCGACG GCGCAGGTCG AGGCGGCCAG CTGATCGCCG AACGGAACGA AACGGAACGA ACAGAAGCCG ATTTTTGGCG GGGCCCACGC CCACGTGAGG CCCCACGTGG ACAGTGGGCC CGGGCGGAGG TGGCACCCAC GTGGACCGCG GGCCCCGCGC CGCCTTCCAA TTTTGGACCC TACCGCTGTA CATATTCATA TATTGCAAGA AGAAGCAAAA CGTACGTGTG GGTTGGGTTG GGCTTCTCTC TATTACTAAA AAAAATATAA TGGAACGACG GATGAATGGA TGCTT