Os02t0120800-01

Locus

Os02g0120800

Description

Similar to Small GTP-binding protein (Fragment).

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

RAC6

CGSNL Gene Name

RAC/ROP-TYPE GTPASE 6

Oryzabase Gene Symbol Synonym(s)

OsRacB, RacB, OsRac6

Oryzabase Gene Name Synonym(s)

Rac-like GTP-binding protein 6, GTPase protein RacB

Transcript Evidence

AK100842 (DDBJ, Best hit)

Protein Evidence

NP_001105197.1 (RefSeq)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: GTP catabolic process (GO:0006184)

Biological Process: signal transduction (GO:0007165)

Biological Process: small GTPase mediated signal transduction (GO:0007264)

Biological Process: protein transport (GO:0015031)

Cellular Component: intracellular (GO:0005622)

Cellular Component: membrane (GO:0016020)

Molecular Function: GTPase activity (GO:0003924)

Molecular Function: GTP binding (GO:0005525)

Functional domain (InterPro)

Small GTPase superfamily (IPR001806)

Small GTPase superfamily, Rho type (IPR003578)

Small GTPase superfamily, Rab type (IPR003579)

Small GTP-binding protein domain (IPR005225)

Small GTPase superfamily, Ras type (IPR020849)

Full-length cDNA

J023123F22 (Online Clone Ordering)

Expression Databases

TENOR (Os02t0120800-01)

RiceXPro (AK100842)

Others

Oryzabase (6293)

KEGG (Os02t0120800-01)

Transcript

1384 bp

>Os02t0120800-01 Similar to Small GTP-binding protein (Fragment).
GCCACCTCCTCCACCCACCTCACCCACCACCTCTCTCTCTACTCCTCCTCTTCTCCTCCT
CCGTCTCGAGCGAGCTCTCTCCTTCCTTGTCTCGGGTCTCGGCATTGCATTTGCATTGGG
GGGCATTGCTATTGCTTCGCTTGCGCTTGGCCACCCACCATTTCGGCGCGGAGAGGAGAC
CGCTTCACCCGCCGATCTGCGAGAAACCCTCTCCGCCTCGCCTCCTCCACCTCCCAATCT
TAACCCAACCTCCCCCCTTCCTCTCGCGTCGACCCCTTGCTTTGCTCCTCCTTCAACCTT
CTTCTTTCTTGGAGTTTCTTGAGAGAGAGAGAGAGAGAgagagagagagagagagagaga
gaggggggagcggtcgcaggaggaggaggacggcggcgtctgctgcgaccgacggggagc
ggcgaggatgagcgcgtccaggttcataaagtgcgtcaccgtcggggacggcgccgtcgg
caagacCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTGATTATGTTCCGAC
GGTGTTTGACAACTTCAGTGCCAACGTCGTGGTTGATGGTAACACCGTCAACCTCGGGCT
ATGGGACACTGCAGGTCAGGAGGATTACAACAGACTGAGACCACTGAGTTATCGTGGAGC
TGATGTTTTCCTTCTGGCCTTCTCGCTAATCAGCAAGGCCAGCTATGAGAATGTTTCAAA
GAAGTGGATACCTGAGCTGAAGCATTATGCACCTGGTGTGCCTATCATCCTTGTGGGAAC
AAAGCTTGATCTTCGAGATGACAAGCAGTTTTTTGTGGACCATCCTGGTGCTGTTCCTAT
CACCACTGCTCAGGGAGAGGAACTAAGAAAGCAAATAGGCGCCCCATACTACATCGAATG
CAGCTCAAAGACCCAACTAAACGTCAAGGGCGTTTTCGATGCGGCAATAAAGGTGGTGCT
GCAGCCACCCAAGGCGAAGAAGAAGAAAAAGGCGCAAAGGGGGGCGTGCTCCATTTTGTG
ATCTAATCATCAGTAGACGACGAAGAAGAAGAACGATGAAGTTGCCAGGCTTTATTATTG
TTGCGTCTTGCTTCAGCGAAACAGCATTCATGGTCCGGGGATCCTAGTTTACTGGCAGCT
GCAGCAAGGCCTCTTTGTCGAGGCAATGAGCGATCCGTTTGTTTCATTTTCTCCTTTCTG
CCTTGTGATTATCTCGTGTGACTGACAAGTCGTGGCAATTAGGTAACTTTCCTAGATGGT
ATTTCCTGTGTTTGAGAAAAAAAATTCTTGTTATCCCTGTTTCATAAGTAGACATGATGT
AATCGCACTCAGTTTATTCTTTTCCTTCTTATTTCACTTCAATGGAAAATTATGTTTCCC
CTTC

CDS

594 bp

>Os02t0120800-01 Similar to Small GTP-binding protein (Fragment).
atgagcgcgtccaggttcataaagtgcgtcaccgtcggggacggcgccgtcggcaagacC
TGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTGATTATGTTCCGACGGTGTTT
GACAACTTCAGTGCCAACGTCGTGGTTGATGGTAACACCGTCAACCTCGGGCTATGGGAC
ACTGCAGGTCAGGAGGATTACAACAGACTGAGACCACTGAGTTATCGTGGAGCTGATGTT
TTCCTTCTGGCCTTCTCGCTAATCAGCAAGGCCAGCTATGAGAATGTTTCAAAGAAGTGG
ATACCTGAGCTGAAGCATTATGCACCTGGTGTGCCTATCATCCTTGTGGGAACAAAGCTT
GATCTTCGAGATGACAAGCAGTTTTTTGTGGACCATCCTGGTGCTGTTCCTATCACCACT
GCTCAGGGAGAGGAACTAAGAAAGCAAATAGGCGCCCCATACTACATCGAATGCAGCTCA
AAGACCCAACTAAACGTCAAGGGCGTTTTCGATGCGGCAATAAAGGTGGTGCTGCAGCCA
CCCAAGGCGAAGAAGAAGAAAAAGGCGCAAAGGGGGGCGTGCTCCATTTTGTGA

Protein

198 aa

>Os02t0120800-01 Similar to Small GTP-binding protein (Fragment).
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD
TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP
PKAKKKKKAQRGACSIL*

5'UTR

chr02:1083856..1084282 (- strand) : 427 bp

CDS

chr02:1083757..1083855 (- strand) : 99 bp

chr02:1082591..1082678 (- strand) : 88 bp

chr02:1082398..1082507 (- strand) : 110 bp

chr02:1081938..1082001 (- strand) : 64 bp

chr02:1081306..1081370 (- strand) : 65 bp

chr02:1081111..1081176 (- strand) : 66 bp

chr02:1080923..1081024 (- strand) : 102 bp

3'UTR

chr02:1080560..1080922 (- strand) : 363 bp

FASTA

>Os02t0120800-01 class=Sequence position=chr02:1080560..1084282 (- strand)
GCCACCTCCT CCACCCACCT CACCCACCAC CTCTCTCTCT ACTCCTCCTC TTCTCCTCCT CCGTCTCGAG CGAGCTCTCT
CCTTCCTTGT CTCGGGTCTC GGCATTGCAT TTGCATTGGG GGGCATTGCT ATTGCTTCGC TTGCGCTTGG CCACCCACCA
TTTCGGCGCG GAGAGGAGAC CGCTTCACCC GCCGATCTGC GAGAAACCCT CTCCGCCTCG CCTCCTCCAC CTCCCAATCT
TAACCCAACC TCCCCCCTTC CTCTCGCGTC GACCCCTTGC TTTGCTCCTC CTTCAACCTT CTTCTTTCTT GGAGTTTCTT
GAGAGAGAGA GAGAGAGAga gagagagaga gagagagaga gaggggggag cggtcgcagg aggaggagga cggcggcgtc
tgctgcgacc gacggggagc ggcgaggatg agcgcgtcca ggttcataaa gtgcgtcacc gtcggggacg gcgccgtcgg
caagacCTGC ATGCTCATCT CCTACACCTC CAACACCTTC CCCACTGTGC GTATTCTTCT TCTTCTTCTT CTTCTTCTTC
CTCCAAACAT TTCCTTTTCT TCTTCTTCTT CTTTCTTTTG CTTCTTCTTT TTTTAATTAT TTTTGAAAAA AAATACTTGT
GTGCTCGGAG GCTTGGAGCT AGGATTATGG TTCTTGATCT GGATTTGGGC CCAAATTGTG GGGCTTTTCT GATTCGTCCG
CCGCTCGTGA ATTTGGGACA ATGCGGCTTC GAATTCCTGC CTAGGGTTGC CATTCGAGTT TGAGTAAAAA GGGGATCTTT
TGCACGGCAC CCCGTACCAA ATCAAAAACC GTGGCTCAAA TCGAAGCCAA ATGCTGCCTC ATTCGTTCCT CGTGAACGCT
CAAACAAAAA AAATGCAGTA GAAAAACAAA AAATTCGTCC TTGATTGCTT GCAGCATTTA TGGATTGTAG CAGCATTAGC
GGCGGAAAAA AATGCAGGTT TTTTCCCCCC ACGATTCATA TAACGTCGAA TCAGTTTGGC TGGCGTTTCT CTATCAAAGG
TGGGAAACCG CGGATCCGCC AGGTCGAGAG CTCGATATCG CTTTCCCGAC TTTCTAGTTG TCCTGTACCC TCCTCCACTC
ACATCTCACA CCTTCCCCAT GGTTGGTAAG CGCATTCTTT GTTCCTTTCA CGCAAATCCA CACCCAATCA ATTACACACC
ACCACCCTTG CTTTTCGCGC ATGGTTAATT TCCCAATTGC ACATTAATTT CCCTCTTTTG AGGAGAGATC TTCAAAAGAA
GAGAACATTT CAGCTGCTTT GGGGGGTAGA TTAGCTTATT AGAGCCCTGA GACATGGTGA CCATGTAGTG GGGGTAGTGT
ATCCATTGGA CCACCTGTGG ACTTCTTGCC ATGTATAATA GGCCTGGTAA AATAGTAATC TAGTGGAGTA TATATCAGTT
TTGTAATCTT ATCTTTAGGC AAGAGTTTGA GAATGGACTG CACATTTACC ATAGATATCT TATCAGTTCT GTAACAGTAG
GATTCACCTC ATTTTGTATC TTATGAATCG GTTGTGCCTT GAGACGATAT GTGCACTCAT TGTTCGCGTC ATTGCTTTTG
ACAGGATTAT GTTCCGACGG TGTTTGACAA CTTCAGTGCC AACGTCGTGG TTGATGGTAA CACCGTCAAC CTCGGGCTAT
GGGACACTGC AGGTAATCTG GTTGCGCTGC TATCTAATTC TGCATGCTTG TTTTCTTCTA CCAAGTTATT AAGTTTTTCC
TTCGGAATAC CACAGGTCAG GAGGATTACA ACAGACTGAG ACCACTGAGT TATCGTGGAG CTGATGTTTT CCTTCTGGCC
TTCTCGCTAA TCAGCAAGGC CAGCTATGAG AATGTTTCAA AGAAGGCAAG GGACTCACTT TCATTTTCTG TTAATAATAT
TGATGTGCTC TTTTTTTCTT CTTTCGCTAA AGAAGTTTGT TGGTCATGTT TAATTTGAGA TCGTCTGTGC AATGATATGT
TGCTTCTGGC ATTTTTCTTG TGTTTTTGCC TTCTTCGATG ATAAAACTAT TACCATGCTG GGAATTAGGC TCCACAAAAT
TTAGAGCAGG CCTAGATGCA TCCTTCAATG GATTATTCCA CCCATTAGAG ATGATAGATG ATGATAATAA TCTCATAAAT
TTATGTTCAT AGGTCATTGT CTTATGTTGA TACTTGATTT GATCATTTTT GTGGCTCGAT TCACTTTTTT AGTCTCCACT
TATGGTACTT CTTGTTGATT CTAAACTTTG TTATATTTCA GTGGATACCT GAGCTGAAGC ATTATGCACC TGGTGTGCCT
ATCATCCTTG TGGGAACAAA GCTTGGTAAG AACCGTGCAA GGCTCTATTT TGAGAAATCT AATCTTTTGT ACCTGTCACA
AGTTCGGTTT TGATTTTGGA TGGAAGTAGT GGCATGGGAT TTTTAGGTTG ATACGATTTT ATTTGGTGTG TGTTCTTTTG
ATGTCAATGC TTGGTACTGG TGACGTCATT TAGTGATAAT ACATGAAGCA GGGTGCTCTA TAAAAGAGGA AAAATATGGA
TATATAGTAC CAGTATATCA ATCAGCCATA GTTTTTAGTA CTTGCAAGAA ATTCTTGTGA TAAACCTATT TGAACTGTTT
GCTCTTTTGG TTCTACTTTT GTACTATTCA ACTTTGGTTC AACAACATGC AACAGTTATA CTCTGTCTCA CAGATTTGTG
GCATTGCACG TTGTCCCTCA GTTTGCTATT GTCATGATGG ATTCAGTTTT GTTGTCTTTT TTTTTTTGGC TGGTGTTTCT
ACCTGTCTTA TGAAATTAAA TTCCAATCAT TCTACAGATA ATATCCCCTT CGACCTGTAA AGATCCAACT GTAGCCCACT
TACATTTTTC ACATTGTTTA TTGCACTGGC AGATCTTCGA GATGACAAGC AGTTTTTTGT GGACCATCCT GGTGCTGTTC
CTATCACCAC TGCTCAGGTA CAGTTGTGGC ATTGTGGGTT GTTTAATTCC TTATTTACTG TAGCATCAGA GATGTACTTG
CAACTCCTGT GGACTACATT GCCATATCTT GATCATTTTT TTGTTCCTTA ATTGCCACTT TTGTAGGGAG AGGAACTAAG
AAAGCAAATA GGCGCCCCAT ACTACATCGA ATGCAGCTCA AAGACCCAAC TAGTACTGCT TTCTTCCCAT TTCTTTGCTA
AATGTGCAAT AACATATAAG ATACTAACAG AGATATCCTG CCCCCCCCTG ATCTGCAGAA CGTCAAGGGC GTTTTCGATG
CGGCAATAAA GGTGGTGCTG CAGCCACCCA AGGCGAAGAA GAAGAAAAAG GCGCAAAGGG GGGCGTGCTC CATTTTGTGA
TCTAATCATC AGTAGACGAC GAAGAAGAAG AACGATGAAG TTGCCAGGCT TTATTATTGT TGCGTCTTGC TTCAGCGAAA
CAGCATTCAT GGTCCGGGGA TCCTAGTTTA CTGGCAGCTG CAGCAAGGCC TCTTTGTCGA GGCAATGAGC GATCCGTTTG
TTTCATTTTC TCCTTTCTGC CTTGTGATTA TCTCGTGTGA CTGACAAGTC GTGGCAATTA GGTAACTTTC CTAGATGGTA
TTTCCTGTGT TTGAGAAAAA AAATTCTTGT TATCCCTGTT TCATAAGTAG ACATGATGTA ATCGCACTCA GTTTATTCTT
TTCCTTCTTA TTTCACTTCA ATGGAAAATT ATGTTTCCCC TTC