Locus

Os02g0559400

Description

Similar to 12-oxo-phytodienoic acid reductase5.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

OPR8

CGSNL Gene Name

12-OXOPHYTODIENOATE REDUCTASE 8

Oryzabase Gene Symbol Synonym(s)

OsOPR8, OsOPR7, OsOPR02-1

Oryzabase Gene Name Synonym(s)

12-oxo-phytodienoic acid reductase 8

Transcript Evidence

AK059887 (DDBJ, Best hit)

Protein Evidence

NP_001105909.1 (RefSeq)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: metabolic process (GO:0008152)

Biological Process: oxidation-reduction process (GO:0055114)

Molecular Function: catalytic activity (GO:0003824)

Molecular Function: FMN binding (GO:0010181)

Molecular Function: oxidoreductase activity (GO:0016491)

Functional domain (InterPro)

NADH:flavin oxidoreductase/NADH oxidase, N-terminal (IPR001155)

Aldolase-type TIM barrel (IPR013785)

Full-length cDNA

006-208-B12 (Online Clone Ordering)

Expression Databases

TENOR (Os02t0559400-02)

Others

Oryzabase (8762)

Transcript

1250 bp

>Os02t0559400-02 Similar to 12-oxo-phytodienoic acid reductase5.
TCTCGATTCTTCTCCACTCGAGCAGAAGACCGGAATCAGCTCCCGTACCCTGTTTGTTAC
CCATGGAAGCGAAAATTCCCCTCCTTACTCCTCACACCATGGGGAGATTCCACCTCGCCC
ACAGGGTTGTCCATGCGCCGCTGACCAGATCGAGGTGCTACAATAATCTTCCTCAAGAAC
ATGTTCAGCTGTACTACTCGCAGAGGGCCACAAATGGCGGCCTTCTGATCGCTGAAGCCA
CCGGGGTCTCGGAGACTGCTCAAGGGTATCCAAACACACCGGGTATATGGACAAAGGAGC
AGGTGGAAGCTTGGAGGACGGTTGTGGATGCAGTGCATCAGAAGGGTGGTGTTTTCTTCT
GCCAAATCTGGCATGTAGGGAGGGCATCTACCAATGATTATCAGCCCAATGGACAAACAC
CAATTCCTTGTACAGACAAGAAAATCACTCCTACAGTTCTCAAAGATGGAACTGTCGAGG
AATTCTCTGCCCCAAGGAGGCTAAGAGAAGATGAGATCCCCCAAATTGTTGATGATTTCC
GAATTGCTGCTAGGAATTGCATTGAAGCAGGCTTTGACGGAGTTGAAATCCACTGCGCAT
TTGGGTACCTAATTGAACAGTTCATGAAAGATGGTGTCAACGACAGAACTGACAAGTACG
GAGGAAGCATCGCAAACCGTTGCCGCTTTGCTCTAGAGGTAATCCAAGCAGCCATCGATG
AGATCGGATCGGACAGAGTAGGTGTCCGTCTCTCGCCATACTCAAACTGCCTGGACTGTT
GGGACTCAGACCCAGATGCACTTGGCCTCTACATGATCCAAGCCATGAGCAAGCTGGGCG
TTCTCTACTGCAGCATGGTTGAGCCTGAGGTGGTCAAAGTAGACGGCAAGGTGCAGATTC
CTTACAAGCTATGGCACTTCAGGAAAGTGTTTGCTGGCACTTTCATCGTCGCTGGAGGAT
ACAACAGAGAAGAAGGCAATAGAGCAGTGTCTCAGGGTTACACAGACCTGGTAGCATATG
GTAAATGGTTCTTGGCAAACCCGGATCTGCCTAGGCGGTTTGAGCTGAATGCGCCTCTGA
ACAAGTATGACAGATCGACGTTCTACACTTCTGATCCAGTTATCGGGTACACCGATTACC
CTTTTCTCAGTCCTCTGTGAGTATTGCATTTGTTTTAATTAAGCGAGAAATTGCAATCCA
TTCCTCAGAGCTCTTGACTTGGAATCACAATAAAATTAAATTGATTTGGT

CDS

1098 bp

>Os02t0559400-02 Similar to 12-oxo-phytodienoic acid reductase5.
ATGGAAGCGAAAATTCCCCTCCTTACTCCTCACACCATGGGGAGATTCCACCTCGCCCAC
AGGGTTGTCCATGCGCCGCTGACCAGATCGAGGTGCTACAATAATCTTCCTCAAGAACAT
GTTCAGCTGTACTACTCGCAGAGGGCCACAAATGGCGGCCTTCTGATCGCTGAAGCCACC
GGGGTCTCGGAGACTGCTCAAGGGTATCCAAACACACCGGGTATATGGACAAAGGAGCAG
GTGGAAGCTTGGAGGACGGTTGTGGATGCAGTGCATCAGAAGGGTGGTGTTTTCTTCTGC
CAAATCTGGCATGTAGGGAGGGCATCTACCAATGATTATCAGCCCAATGGACAAACACCA
ATTCCTTGTACAGACAAGAAAATCACTCCTACAGTTCTCAAAGATGGAACTGTCGAGGAA
TTCTCTGCCCCAAGGAGGCTAAGAGAAGATGAGATCCCCCAAATTGTTGATGATTTCCGA
ATTGCTGCTAGGAATTGCATTGAAGCAGGCTTTGACGGAGTTGAAATCCACTGCGCATTT
GGGTACCTAATTGAACAGTTCATGAAAGATGGTGTCAACGACAGAACTGACAAGTACGGA
GGAAGCATCGCAAACCGTTGCCGCTTTGCTCTAGAGGTAATCCAAGCAGCCATCGATGAG
ATCGGATCGGACAGAGTAGGTGTCCGTCTCTCGCCATACTCAAACTGCCTGGACTGTTGG
GACTCAGACCCAGATGCACTTGGCCTCTACATGATCCAAGCCATGAGCAAGCTGGGCGTT
CTCTACTGCAGCATGGTTGAGCCTGAGGTGGTCAAAGTAGACGGCAAGGTGCAGATTCCT
TACAAGCTATGGCACTTCAGGAAAGTGTTTGCTGGCACTTTCATCGTCGCTGGAGGATAC
AACAGAGAAGAAGGCAATAGAGCAGTGTCTCAGGGTTACACAGACCTGGTAGCATATGGT
AAATGGTTCTTGGCAAACCCGGATCTGCCTAGGCGGTTTGAGCTGAATGCGCCTCTGAAC
AAGTATGACAGATCGACGTTCTACACTTCTGATCCAGTTATCGGGTACACCGATTACCCT
TTTCTCAGTCCTCTGTGA

Protein

365 aa

>Os02t0559400-02 Similar to 12-oxo-phytodienoic acid reductase5.
MEAKIPLLTPHTMGRFHLAHRVVHAPLTRSRCYNNLPQEHVQLYYSQRATNGGLLIAEAT
GVSETAQGYPNTPGIWTKEQVEAWRTVVDAVHQKGGVFFCQIWHVGRASTNDYQPNGQTP
IPCTDKKITPTVLKDGTVEEFSAPRRLREDEIPQIVDDFRIAARNCIEAGFDGVEIHCAF
GYLIEQFMKDGVNDRTDKYGGSIANRCRFALEVIQAAIDEIGSDRVGVRLSPYSNCLDCW
DSDPDALGLYMIQAMSKLGVLYCSMVEPEVVKVDGKVQIPYKLWHFRKVFAGTFIVAGGY
NREEGNRAVSQGYTDLVAYGKWFLANPDLPRRFELNAPLNKYDRSTFYTSDPVIGYTDYP
FLSPL*

5'UTR

chr02:21231220..21231281 (- strand) : 62 bp

CDS

chr02:21231158..21231219 (- strand) : 62 bp

chr02:21230547..21230818 (- strand) : 272 bp

chr02:21229846..21230019 (- strand) : 174 bp

chr02:21229055..21229644 (- strand) : 590 bp

3'UTR

chr02:21228965..21229054 (- strand) : 90 bp

FASTA

>Os02t0559400-02 class=Sequence position=chr02:21228965..21231281 (- strand)
TCTCGATTCT TCTCCACTCG AGCAGAAGAC CGGAATCAGC TCCCGTACCC TGTTTGTTAC CCATGGAAGC GAAAATTCCC
CTCCTTACTC CTCACACCAT GGGGAGATTC CACCTCGCCC ACAGGTATGT GCTGCTATAT GTCCATCCAT CGCCTTTGGT
TTTGTAATAG CAATCGCTCC CTACTTGCTA GGATTCTTCA GCCCTCGAAC TGGATGACGT TAATCGATCA ATCGATTATC
TAGATAACAA TTCTTCCTCA TAGTTAAGGT AGTGTCTGGC TACTGCCTAC TGCACTGCGG TTTCAGCTGT TAAGGTTTAG
TGCCCTCAAG GTGTTTGATG GATTGCCTCT GAGCCTGGAG GGTGGCTGCC TGGGCGAATC TTGATGTTTG GAGCTAGCTA
ACCTCAAGAA ATTTCTCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTTC CTCTTGGTCT TAGGGTTGTC CATGCGCCGC
TGACCAGATC GAGGTGCTAC AATAATCTTC CTCAAGAACA TGTTCAGCTG TACTACTCGC AGAGGGCCAC AAATGGCGGC
CTTCTGATCG CTGAAGCCAC CGGGGTCTCG GAGACTGCTC AAGGGTATCC AAACACACCG GGTATATGGA CAAAGGAGCA
GGTGGAAGCT TGGAGGACGG TTGTGGATGC AGTGCATCAG AAGGGTGGTG TTTTCTTCTG CCAAATCTGG CATGTAGGGA
GGGCATCTAC CAATGGTATT ATTATCCATA TCATTATCTT CCTACAAGTT TGGATATATT GAAATTTTTA TGAATGCGTG
TTGCTTGATG AATTTCACTC TTAACTTGGT TATTGCAATG GTAAATTTCA TATGGGATCA ATAAACTGAA GTTTTCTGAG
CCTGCTTGAC TTTAATCCTT TCAAAAGCAG TTGTGGCATT TCATCTTGTA GGATAGGACA TTGGAATATT TAGAATATCA
GGTTGTTTGC ATGTGAAAAT AGTGTCAACT GTTCAAATAA GTCTAGAATC GGATCGTTAC AGAGGTCACA GTATCATCAA
ACACCACATA TCAAATTGAC ATGGCTGAAT TCTGGTTTCT TTATATGAAG CCATTCCCTC TGTTTCCACA AAAAAAAAAA
ATCAAACTAC GGCATGGTGC TTCTTTCTCT GAGTTTAGTC TATCAAGGTC TGTAATGTTT TTATGTGAAG CAAAACAGTC
AAACTTTCAT ATGAGTTGCA TTTTGCGTGA TTGTCAGGTT CCTCTGACAG CAACATTTGC AGATTATCAG CCCAATGGAC
AAACACCAAT TCCTTGTACA GACAAGAAAA TCACTCCTAC AGTTCTCAAA GATGGAACTG TCGAGGAATT CTCTGCCCCA
AGGAGGCTAA GAGAAGATGA GATCCCCCAA ATTGTTGATG ATTTCCGAAT TGCTGCTAGG AATTGCATTG AAGCAGGTAC
TTCCATAATC TATGCATCTT CATATAACCA TTCCCAATAT TTTGTTGGCT AAACTGTAGC ATTGTACCAT CATAGTTGTA
ACTTGCAAGA ATTTGGAGTC CAAATACTGC TTTTGGCTAG CAGTAATTTA CCTTTTGATG AACTTCACGG TACCATCCAA
CTAGAAGTTT TAATTTGTTA CATCCATGAT ATTATAGGCT TTGACGGAGT TGAAATCCAC TGCGCATTTG GGTACCTAAT
TGAACAGTTC ATGAAAGATG GTGTCAACGA CAGAACTGAC AAGTACGGAG GAAGCATCGC AAACCGTTGC CGCTTTGCTC
TAGAGGTAAT CCAAGCAGCC ATCGATGAGA TCGGATCGGA CAGAGTAGGT GTCCGTCTCT CGCCATACTC AAACTGCCTG
GACTGTTGGG ACTCAGACCC AGATGCACTT GGCCTCTACA TGATCCAAGC CATGAGCAAG CTGGGCGTTC TCTACTGCAG
CATGGTTGAG CCTGAGGTGG TCAAAGTAGA CGGCAAGGTG CAGATTCCTT ACAAGCTATG GCACTTCAGG AAAGTGTTTG
CTGGCACTTT CATCGTCGCT GGAGGATACA ACAGAGAAGA AGGCAATAGA GCAGTGTCTC AGGGTTACAC AGACCTGGTA
GCATATGGTA AATGGTTCTT GGCAAACCCG GATCTGCCTA GGCGGTTTGA GCTGAATGCG CCTCTGAACA AGTATGACAG
ATCGACGTTC TACACTTCTG ATCCAGTTAT CGGGTACACC GATTACCCTT TTCTCAGTCC TCTGTGAGTA TTGCATTTGT
TTTAATTAAG CGAGAAATTG CAATCCATTC CTCAGAGCTC TTGACTTGGA ATCACAATAA AATTAAATTG ATTTGGT

Locus: Os02g0559400

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

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Locus: Os02g0559400

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

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