Locus
Os03g0307700
Description
Domain of unknown function DUF231, plant domain containing protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
CGSNL Gene Name
Oryzabase Gene Symbol Synonym(s)
OsTBL28, TBL28
Oryzabase Gene Name Synonym(s)
trichome birefringence-like 28
Transcript Evidence
AK376385 (DDBJ)
Protein Evidence
NP_001049898.2 (RefSeq)
Literature
Note
- Exon-intron structures, exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
Functional domain (InterPro)
Domain of unknown function DUF231, plant (IPR004253)
Expression Databases
TENOR (Os03t0307700-00)
Others
Oryzabase (21483)
Transcript |
1894 bp |
>Os03t0307700-00 Domain of unknown function DUF231, plant domain containing protein. AATGGACAGGCAGAGGAGCAGTGGCTCGTCGTCCACCTCGCACTACGGCGTCGTGAGCCC CAAGGGCCTCATCCTCCTCTCCTTCGCCTCCTCCTCCCTCCTCTTCTCCTTCCTCTTCTC CCTCTTCGCCCTCCGCTTCGGCCGCCCGCTCCACCTCCCCTTCGTCGCCTCCTCCTCCCT CGCCGGGAACGCCTCCGCCATTGCGCGGGGCCCGGTTCTTGCTGCAGGTGGTGGGGGCCG CTCCACGAGCGGCGCGGCGGTGGATGTTCTTCCGGGCAGGGGCAGGAGCGGGAGCTTGGG GGAAGCAGCCCGCCGCTCGGATGCCGGAGGTTTTCCGTCCGCGGGAGGCGTGGGTTCCGC AATGGAGGTGAAAGAGGCGGCACTGGGAAGCGAAAACGGCGGAGCTCCTGCCAATGGTGA TTCCGGTTCGGCCATGGGGGCGGAAGGAGCTCCTGCTGGAGGTGGGGATGGCAACTCCGC AGAAGGCGAGAATACCACCAAAGAAGTTGCCGATTCGGCGATGGAGACGAACCTACTTGT TAGCAATGCATCCGCTTCGCAAGAAGCAGCCGCTCCAGCAGAGGAACCGAAGAAACCCAA GTCTGTGCAAGATGTCGATTCCTCCATGGGAGATTCAGACCTCGGGTCGAACGGTGAATT CTTGCAGGGAGAAAGTGGAAATTCCTCTGCAGGAGCACATACTTCTCAACGAGTGGATCA AGGGGAACATTCAGCTCATTCGACAGTGAGGAACAGCTCTGGAGCAGCTCCACTCAGTTC AAGCAAGCAAAAGACTGACCTGGTTCAGGAAACGGTGGATAGCAAGGTGGATGCGGCGAG AAGCGATGCGGCACTATGCAATGTCTATGATGGAAGGTGGGTGTTCGATGAGAGCTATCC ACTTTACACGAGTGATTCTTGCCCGTTCATAGATGAAGGATTCAGCTGCGAAGCAAATGG AAGAATGGATGGAAGCTACAGGAAGTGGAGGTGGCAGCCAACTCATTGCAGTATACCGAG GTTTGATGCTAGGAAAATGCTTGAGATGTTGCGAGGAAAACGGCTAGTGTTTGTCGGAGA CTCCATTAACAGAAATCAGTGGGAATCCATGATGTGCTTGCTGAGAGGGGCAGTCTCAGA TCCTGCAAGGATTCATGAAGCTCGAGGCCGCAGGATTACTAAGGAGAGAGGAGATTACAA CTTCAAGTTTTTGGATTACAATTGCAGTGTGGAGTACCATGTGACGCATTTCTTGGTGCA TGAAGGCAAAGCAAGAATTGGCTCAAAGCGCACGAGGACACTATGGATCGATACTGTTGA TCGCACCTCGTCAAAATGGAGAGGTGCTGATGTTCTTGTGTTCAACACTGCTCATTGGTG GTCGCATCACAAAACAAAAGCTGGAGTGAACTACTATCAAGAAGGTGATCATGTATATCC CCATCTCGATGCTTCCACAGCTTACCTTAAAGCACTAACCACATGGGCATCATGGGTCGA CCATTACATCAATCCAAGGAAAACTCGAGTGTTCTTCCGAAGCTCATCCCCGTCGCATTT CAGCGGCGGGGAGTGGAATTCAGGGGGACACTGCAGAGAGAGCACACTGCCTCTCAGTGA CACTCGTGTAAGGCCGGTGCCTGAGATAAACATGATCTTGGAGCAAGTAGCACAGCAAAT GAAGACTTCTGTGACAATTCTGAACATTACCAATCTATCTGGGCTCAGGATAGATGGGCA TCCATCTGTGTATGGGAGGAAGGCAGTGGTAGGTTTGACAGCATCGAGCGTTCAGGATTG CAGCCACTGGTGCCTTCCTGGAGTGCCAGATACATGGAATGAGCTGCTGTTCTACCATCT GGTATCCTCACAACAAAAGGGTGTAACAAGCTAG
CDS |
1893 bp |
>Os03t0307700-00 Domain of unknown function DUF231, plant domain containing protein. ATGGACAGGCAGAGGAGCAGTGGCTCGTCGTCCACCTCGCACTACGGCGTCGTGAGCCCC AAGGGCCTCATCCTCCTCTCCTTCGCCTCCTCCTCCCTCCTCTTCTCCTTCCTCTTCTCC CTCTTCGCCCTCCGCTTCGGCCGCCCGCTCCACCTCCCCTTCGTCGCCTCCTCCTCCCTC GCCGGGAACGCCTCCGCCATTGCGCGGGGCCCGGTTCTTGCTGCAGGTGGTGGGGGCCGC TCCACGAGCGGCGCGGCGGTGGATGTTCTTCCGGGCAGGGGCAGGAGCGGGAGCTTGGGG GAAGCAGCCCGCCGCTCGGATGCCGGAGGTTTTCCGTCCGCGGGAGGCGTGGGTTCCGCA ATGGAGGTGAAAGAGGCGGCACTGGGAAGCGAAAACGGCGGAGCTCCTGCCAATGGTGAT TCCGGTTCGGCCATGGGGGCGGAAGGAGCTCCTGCTGGAGGTGGGGATGGCAACTCCGCA GAAGGCGAGAATACCACCAAAGAAGTTGCCGATTCGGCGATGGAGACGAACCTACTTGTT AGCAATGCATCCGCTTCGCAAGAAGCAGCCGCTCCAGCAGAGGAACCGAAGAAACCCAAG TCTGTGCAAGATGTCGATTCCTCCATGGGAGATTCAGACCTCGGGTCGAACGGTGAATTC TTGCAGGGAGAAAGTGGAAATTCCTCTGCAGGAGCACATACTTCTCAACGAGTGGATCAA GGGGAACATTCAGCTCATTCGACAGTGAGGAACAGCTCTGGAGCAGCTCCACTCAGTTCA AGCAAGCAAAAGACTGACCTGGTTCAGGAAACGGTGGATAGCAAGGTGGATGCGGCGAGA AGCGATGCGGCACTATGCAATGTCTATGATGGAAGGTGGGTGTTCGATGAGAGCTATCCA CTTTACACGAGTGATTCTTGCCCGTTCATAGATGAAGGATTCAGCTGCGAAGCAAATGGA AGAATGGATGGAAGCTACAGGAAGTGGAGGTGGCAGCCAACTCATTGCAGTATACCGAGG TTTGATGCTAGGAAAATGCTTGAGATGTTGCGAGGAAAACGGCTAGTGTTTGTCGGAGAC TCCATTAACAGAAATCAGTGGGAATCCATGATGTGCTTGCTGAGAGGGGCAGTCTCAGAT CCTGCAAGGATTCATGAAGCTCGAGGCCGCAGGATTACTAAGGAGAGAGGAGATTACAAC TTCAAGTTTTTGGATTACAATTGCAGTGTGGAGTACCATGTGACGCATTTCTTGGTGCAT GAAGGCAAAGCAAGAATTGGCTCAAAGCGCACGAGGACACTATGGATCGATACTGTTGAT CGCACCTCGTCAAAATGGAGAGGTGCTGATGTTCTTGTGTTCAACACTGCTCATTGGTGG TCGCATCACAAAACAAAAGCTGGAGTGAACTACTATCAAGAAGGTGATCATGTATATCCC CATCTCGATGCTTCCACAGCTTACCTTAAAGCACTAACCACATGGGCATCATGGGTCGAC CATTACATCAATCCAAGGAAAACTCGAGTGTTCTTCCGAAGCTCATCCCCGTCGCATTTC AGCGGCGGGGAGTGGAATTCAGGGGGACACTGCAGAGAGAGCACACTGCCTCTCAGTGAC ACTCGTGTAAGGCCGGTGCCTGAGATAAACATGATCTTGGAGCAAGTAGCACAGCAAATG AAGACTTCTGTGACAATTCTGAACATTACCAATCTATCTGGGCTCAGGATAGATGGGCAT CCATCTGTGTATGGGAGGAAGGCAGTGGTAGGTTTGACAGCATCGAGCGTTCAGGATTGC AGCCACTGGTGCCTTCCTGGAGTGCCAGATACATGGAATGAGCTGCTGTTCTACCATCTG GTATCCTCACAACAAAAGGGTGTAACAAGCTAG
Protein |
631 aa |
>Os03t0307700-00 Domain of unknown function DUF231, plant domain containing protein. MDRQRSSGSSSTSHYGVVSPKGLILLSFASSSLLFSFLFSLFALRFGRPLHLPFVASSSL AGNASAIARGPVLAAGGGGRSTSGAAVDVLPGRGRSGSLGEAARRSDAGGFPSAGGVGSA MEVKEAALGSENGGAPANGDSGSAMGAEGAPAGGGDGNSAEGENTTKEVADSAMETNLLV SNASASQEAAAPAEEPKKPKSVQDVDSSMGDSDLGSNGEFLQGESGNSSAGAHTSQRVDQ GEHSAHSTVRNSSGAAPLSSSKQKTDLVQETVDSKVDAARSDAALCNVYDGRWVFDESYP LYTSDSCPFIDEGFSCEANGRMDGSYRKWRWQPTHCSIPRFDARKMLEMLRGKRLVFVGD SINRNQWESMMCLLRGAVSDPARIHEARGRRITKERGDYNFKFLDYNCSVEYHVTHFLVH EGKARIGSKRTRTLWIDTVDRTSSKWRGADVLVFNTAHWWSHHKTKAGVNYYQEGDHVYP HLDASTAYLKALTTWASWVDHYINPRKTRVFFRSSSPSHFSGGEWNSGGHCRESTLPLSD TRVRPVPEINMILEQVAQQMKTSVTILNITNLSGLRIDGHPSVYGRKAVVGLTASSVQDC SHWCLPGVPDTWNELLFYHLVSSQQKGVTS*
5'UTR
chr03:10949519..10949519 (+ strand) : 1 bp
CDS
chr03:10949520..10950538 (+ strand) : 1019 bp
chr03:10950630..10950822 (+ strand) : 193 bp
chr03:10950908..10951098 (+ strand) : 191 bp
chr03:10951260..10951418 (+ strand) : 159 bp
chr03:10951502..10951832 (+ strand) : 331 bp
FASTA
>Os03t0307700-00 class=Sequence position=chr03:10949519..10951832 (+ strand) AATGGACAGG CAGAGGAGCA GTGGCTCGTC GTCCACCTCG CACTACGGCG TCGTGAGCCC CAAGGGCCTC ATCCTCCTCT CCTTCGCCTC CTCCTCCCTC CTCTTCTCCT TCCTCTTCTC CCTCTTCGCC CTCCGCTTCG GCCGCCCGCT CCACCTCCCC TTCGTCGCCT CCTCCTCCCT CGCCGGGAAC GCCTCCGCCA TTGCGCGGGG CCCGGTTCTT GCTGCAGGTG GTGGGGGCCG CTCCACGAGC GGCGCGGCGG TGGATGTTCT TCCGGGCAGG GGCAGGAGCG GGAGCTTGGG GGAAGCAGCC CGCCGCTCGG ATGCCGGAGG TTTTCCGTCC GCGGGAGGCG TGGGTTCCGC AATGGAGGTG AAAGAGGCGG CACTGGGAAG CGAAAACGGC GGAGCTCCTG CCAATGGTGA TTCCGGTTCG GCCATGGGGG CGGAAGGAGC TCCTGCTGGA GGTGGGGATG GCAACTCCGC AGAAGGCGAG AATACCACCA AAGAAGTTGC CGATTCGGCG ATGGAGACGA ACCTACTTGT TAGCAATGCA TCCGCTTCGC AAGAAGCAGC CGCTCCAGCA GAGGAACCGA AGAAACCCAA GTCTGTGCAA GATGTCGATT CCTCCATGGG AGATTCAGAC CTCGGGTCGA ACGGTGAATT CTTGCAGGGA GAAAGTGGAA ATTCCTCTGC AGGAGCACAT ACTTCTCAAC GAGTGGATCA AGGGGAACAT TCAGCTCATT CGACAGTGAG GAACAGCTCT GGAGCAGCTC CACTCAGTTC AAGCAAGCAA AAGACTGACC TGGTTCAGGA AACGGTGGAT AGCAAGGTGG ATGCGGCGAG AAGCGATGCG GCACTATGCA ATGTCTATGA TGGAAGGTGG GTGTTCGATG AGAGCTATCC ACTTTACACG AGTGATTCTT GCCCGTTCAT AGATGAAGGA TTCAGCTGCG AAGCAAATGG AAGAATGGAT GGAAGCTACA GGAAGTGGAG GTGGCAGCCA ACTCATTGCA GTATACCGAG GTGCTGCGTT ACGGTGCATT CGTGCAGTTT ATCGATTGCT TAGGTTATTG AGCTCAACAT TTGCTGACTT TGGAATGCAA TGAAATTTTA GGTTTGATGC TAGGAAAATG CTTGAGATGT TGCGAGGAAA ACGGCTAGTG TTTGTCGGAG ACTCCATTAA CAGAAATCAG TGGGAATCCA TGATGTGCTT GCTGAGAGGG GCAGTCTCAG ATCCTGCAAG GATTCATGAA GCTCGAGGCC GCAGGATTAC TAAGGAGAGA GGAGATTACA ACTTCAAGTT TTTGGTTTGT ATGATCTAAT TTCTACTGTT GGAATATGTT CGGTGTTTGA ATTCGGTACA CAATATTTAT CTCGGTAAGG TTGCCGCAGG ATTACAATTG CAGTGTGGAG TACCATGTGA CGCATTTCTT GGTGCATGAA GGCAAAGCAA GAATTGGCTC AAAGCGCACG AGGACACTAT GGATCGATAC TGTTGATCGC ACCTCGTCAA AATGGAGAGG TGCTGATGTT CTTGTGTTCA ACACTGCTCA TTGGTGGTCG CATCACAAAA CAAAAGCTGG GTGAGTGTTT ATAAATAGGG GCAATAATGA ATCATTCACC CCTTACCGTG GTACAACCAA ATTGATCGGT AAATGCAGCT ATTGACATTT TTTTTAGGCC ATGTTATTAT ATAGATGTAG CAGCTTAATG ATAGCCTCTT ACAGCTGCAT TTCATTTTCA GAGTGAACTA CTATCAAGAA GGTGATCATG TATATCCCCA TCTCGATGCT TCCACAGCTT ACCTTAAAGC ACTAACCACA TGGGCATCAT GGGTCGACCA TTACATCAAT CCAAGGAAAA CTCGAGTGTT CTTCCGAAGC TCATCCCCGT CGCATTTCAG GTTTGCTTCC TCATCTGTTC AATTGTAGCA CTAGAAACTT GATGCGGTAA CATAGCAACT TATTGTCTTA TCCATGAGTT CAGCGGCGGG GAGTGGAATT CAGGGGGACA CTGCAGAGAG AGCACACTGC CTCTCAGTGA CACTCGTGTA AGGCCGGTGC CTGAGATAAA CATGATCTTG GAGCAAGTAG CACAGCAAAT GAAGACTTCT GTGACAATTC TGAACATTAC CAATCTATCT GGGCTCAGGA TAGATGGGCA TCCATCTGTG TATGGGAGGA AGGCAGTGGT AGGTTTGACA GCATCGAGCG TTCAGGATTG CAGCCACTGG TGCCTTCCTG GAGTGCCAGA TACATGGAAT GAGCTGCTGT TCTACCATCT GGTATCCTCA CAACAAAAGG GTGTAACAAG CTAG