Os03t0390600-02

Locus

Os03g0390600

Description

Similar to Histone H3.3.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

Oryzabase Gene Name Synonym(s)

histone H3

Transcript Evidence

AK063199 (DDBJ, Best hit)

AK104901 (DDBJ, Best hit)

Protein Evidence

XP_002310848.1 (RefSeq)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: nucleosome assembly (GO:0006334)

Cellular Component: nucleosome (GO:0000786)

Molecular Function: DNA binding (GO:0003677)

Functional domain (InterPro)

Histone H3 (IPR000164)

Histone core (IPR007125)

Histone-fold (IPR009072)

Full-length cDNA

001-112-C06 (Online Clone Ordering)

001-046-D02 (Online Clone Ordering)

Expression Databases

TENOR (Os03t0390600-02)

Others

Oryzabase (15761)

Transcript

834 bp

>Os03t0390600-02 Similar to Histone H3.3.
AATTTTTCTGCGGTTTCTTCTTCTTCTTCCTCCTCCTCGCGCTCCCCCGATTCGAAGCGT
GAAGAGAGGAACGGCGCTTGCGAGAGGAGAGAGatggcccgtaccaagcagaccgctcgt
aagtccacaggaggaaaggctcccaggaagcagcttgccaccaagGCTGCTCGTAAGTCT
GCTCCCACCACTGGAGGAGTTAAGAAGCCCCACCGTTACCGCCCTGGAACTGTTGCCCTC
CGTGAGATTCGCAAGTACCAGAAGAGTACTGAGCTTTTGATCAGGAAGCTGCCCTTCCAG
AGGCTTGTTAGGGAAATTGCACAGGACTTCAAGACCGATCTGCGTTTCCAGAGCCATGCT
GTCCTTGCCCTCCAGGAGGCTGCGGAGGCATACCTTGTTGGTCTCTTCGAGGACACCAAC
CTGTGCGCCATTCATGCCAAGCGTGTGACCATCATGCCTAAGGACATTCAGCTGGCTAGG
AGGATTCGTGGTGAGAGGGCTTAAATTCCCCTCGGCGATTCCTTTGACAAATGAAGCATG
CGTCGTAGTGTTAGTAGTGGGTTTTAATCTTTTGCTTATAAGAACAATCTGAGTAGGGTG
TATTTTGTGGAACAATATGTTTCTCATGATGGTGCTGTATTCGTCTTATTGGTGGATCTG
TCAAAAATACTCAGCATATTGTCAGTGTGTCTGGTGACTCTTATTTTGTTAGTCTGATTC
GTTTGCGTCTTATTCTAGCGGTGCTGCCTCTTTGGCACTGTGCATGGCTAGATACAATTA
CATTGTAATTCACCTGTCTCTAATCCGTGTTAATGTAAGTGTTCCGTTGCTGTC

CDS

411 bp

>Os03t0390600-02 Similar to Histone H3.3.
atggcccgtaccaagcagaccgctcgtaagtccacaggaggaaaggctcccaggaagcag
cttgccaccaagGCTGCTCGTAAGTCTGCTCCCACCACTGGAGGAGTTAAGAAGCCCCAC
CGTTACCGCCCTGGAACTGTTGCCCTCCGTGAGATTCGCAAGTACCAGAAGAGTACTGAG
CTTTTGATCAGGAAGCTGCCCTTCCAGAGGCTTGTTAGGGAAATTGCACAGGACTTCAAG
ACCGATCTGCGTTTCCAGAGCCATGCTGTCCTTGCCCTCCAGGAGGCTGCGGAGGCATAC
CTTGTTGGTCTCTTCGAGGACACCAACCTGTGCGCCATTCATGCCAAGCGTGTGACCATC
ATGCCTAAGGACATTCAGCTGGCTAGGAGGATTCGTGGTGAGAGGGCTTAA

Protein

137 aa

>Os03t0390600-02 Similar to Histone H3.3.
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
MPKDIQLARRIRGERA*

5'UTR

chr03:15645609..15645701 (+ strand) : 93 bp

CDS

chr03:15647132..15647203 (+ strand) : 72 bp

chr03:15647289..15647365 (+ strand) : 77 bp

chr03:15647457..15647547 (+ strand) : 91 bp

chr03:15647645..15647815 (+ strand) : 171 bp

3'UTR

chr03:15647816..15648145 (+ strand) : 330 bp

FASTA

>Os03t0390600-02 class=Sequence position=chr03:15645609..15648145 (+ strand)
AATTTTTCTG CGGTTTCTTC TTCTTCTTCC TCCTCCTCGC GCTCCCCCGA TTCGAAGCGT GAAGAGAGGA ACGGCGCTTG
CGAGAGGAGA GAGGTAAGCA TCACGGCGAA GTTTCCCCCT CTCTCTTTCT TTTCGTCTCG TTTGCTGCGA CCCCGGCGGG
GTATTGAGAT TCTCCGTTGA GGTCGGTTGG TTGGGGGCTT GGGGGATTGG GTGGGTTAGG GCTTGGGGGT GGGGGGAATT
TGGCGATTTG GGGGGTTTTC TCGGGTGATC TGCTTGTTTT TGCGCCGTTT CGCCCGGTGA ATGCCAGCCC CGTGTGATTT
GCTGGTTTGG TTGTGGTCTA ATCGTCTGAT ATTCCAGGGC TGTGTAGTCC TGTAGTTTTT GACTAGGTAA TTGGAGTGCT
GATGGGATTT GCCGTTGAAT TTTAGGTTGT TTAGCTCTAA TTTACCTGCA ACGTTTTGGG AATTAGGGTT TCTTGGTGAA
TTTTAGGTTG TTTAGCTTTA ATTTACCTGC AACGTTTTGG GAATTAGGGT TTATTGGTGA TATAGTGGAT ACGCATCGTA
AACTTGTATT TAGGATTCCC CTTGGGATTT TGTAGGCGAG TGGCGGCTGT ATGTGATTGG CACGAATTAT TTACTCGGGT
GAATTTAGAC TAGCTATTTT ATTGTTGCCG TGCCCTTTCT GGATATGAAC GGATGAATAT GGCGTCACTG CTCGATGATA
TCGCAATGTT ATGATTGAAA AAGCATAGTA GTTATACTGA TGCCATTGTG TAGTAGTTAG TTTGTACCTC CCCTGGGTTG
CATTGCAACT TGCGTTAATA TGGATACTCC GTACAATTGT TTATTGTTTA CTTGGTATAG CTATGCTGCA TTTTCTATAT
TTGTTGGGTT ATAAGTTTTT GTCCAATATT TTTAATGACT TGTGCCAGAG GCTCTCAATC CTCTGTTATT AGACCTGTAA
TTGTAAGGTC TATTTCTCCT TCATTCTGTT TCAATGTTAG TTTGTGGATG TACAGAAATC AAGCTATGAT TGATATAATA
CATTGCTTTG GCATAATGGC ACTCTTATTT TTGTTTTATT TAGGAGAGTG CTGTGTATTA GTTTGTTCAG TTAATTCAAT
GTTGTATGTT TTACTGTGTC GGGAACTTAC AGATGTTCTC TTTAGGTTTC TATCCATTAG TAAGTAGAGT TGTTGCTTTG
CTTGAAACCA TCAATTTGAA TCTGTTTATA GAGATAGGCT GTTATTCCTG CTTACTATTT TTTATATAGT TACTTTGCCA
TCCGTTAATC AGGTTAAGAA CAATAAATTG TGTCCATAAT CAATGTTTTC AATGGAACTC ACAAAATTTT GACAGAAACA
TGTTGCTTTC TTAGGTCAAT CTCTAGCATA TTGTTTTTTT TTTGAATTGT TACTTGTTTC TGTGGTGTTA TTACAGAAAG
TGCTTACTTC CACTCTAGAA TTTTATTACA TTTTTGTCAC AGCATATTCT GTCTGTAACA TGTTATTCCT TTTTGTAACA
Tagatggccc gtaccaagca gaccgctcgt aagtccacag gaggaaaggc tcccaggaag cagcttgcca ccaaggtatA
ATTCTTTTCA TACTTGCCTT TTGCTTTGTT AAACACAGAG TGATTTCGAC AGATGGTCTT ACATCACCAT CTCTGTGCAG
GCTGCTCGTA AGTCTGCTCC CACCACTGGA GGAGTTAAGA AGCCCCACCG TTACCGCCCT GGAACTGTTG CCCTCCGGTT
AGTATCAAAT TCCTGGGATG GTTACCTCCA TGTGGTCTTT GATATGCTTT TGCTTATTTG TTTTGCTACT ATTGTGCTTA
TAAAACAGTG AGATTCGCAA GTACCAGAAG AGTACTGAGC TTTTGATCAG GAAGCTGCCC TTCCAGAGGC TTGTTAGGGA
AATTGCACAG GACTTCAAGG TTGGTATCTC AAAAGTTCAT GGCATAATTT GATTGCTTTC AAATTTGGAT TGTTTGTGAT
GGCTTATCGA TTGAACTTGG CTTTGTTGTT TTGCAGACCG ATCTGCGTTT CCAGAGCCAT GCTGTCCTTG CCCTCCAGGA
GGCTGCGGAG GCATACCTTG TTGGTCTCTT CGAGGACACC AACCTGTGCG CCATTCATGC CAAGCGTGTG ACCATCATGC
CTAAGGACAT TCAGCTGGCT AGGAGGATTC GTGGTGAGAG GGCTTAAATT CCCCTCGGCG ATTCCTTTGA CAAATGAAGC
ATGCGTCGTA GTGTTAGTAG TGGGTTTTAA TCTTTTGCTT ATAAGAACAA TCTGAGTAGG GTGTATTTTG TGGAACAATA
TGTTTCTCAT GATGGTGCTG TATTCGTCTT ATTGGTGGAT CTGTCAAAAA TACTCAGCAT ATTGTCAGTG TGTCTGGTGA
CTCTTATTTT GTTAGTCTGA TTCGTTTGCG TCTTATTCTA GCGGTGCTGC CTCTTTGGCA CTGTGCATGG CTAGATACAA
TTACATTGTA ATTCACCTGT CTCTAATCCG TGTTAATGTA AGTGTTCCGT TGCTGTC