Os03t0609500-01

Locus

Os03g0609500

Description

LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein, Transcriptional activator, Regulation of heading date and yield

RAP-DB Gene Symbol Synonym(s)

OsLBD38

RAP-DB Gene Name Synonym(s)

LATERAL ORGAN BOUNDARIES DOMAIN 38

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

OsLBD38, LBD38

Oryzabase Gene Name Synonym(s)

LATERAL ORGAN BOUNDARIES DOMAIN 38, lateral organ boundaries domain protein 38

Transcript Evidence

AK288002

Protein Evidence

Q75HN5

Literature

PMID: 28342864

Note

Manual Curation

October 26, 2017

Functional domain (InterPro)

Lateral organ boundaries, LOB (IPR004883)

Experimentally confirmed subcellular location

nucleus (GO:0005634)

Full-length cDNA

J075110B01 (Online Clone Ordering)

Expression Databases

TENOR (Os03t0609500-01)

Others

Oryzabase (21733)

KEGG (Os03t0609500-01)

Transcript

1104 bp

>Os03t0609500-01 LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein, Transcriptional activator, Regulation of heading date and yield
ATTGGACATTTGTTCTCAGCTTCAGCTCGGCCCCCGTCTTCTCATCACCAGCTCAGCTGT
GGCCGGCCGCGCGCGATCCAAGTTGCTAGCTAGCTAAGCTTTTGTAACTGAGAGTGAGCT
AGCTAGGTAGCTGGGTATTGGGTATTATATTGCGAGAGATAGAGAGAGATGAGCTGCAAC
GGGTGCCGCGTGCTGCGGAAGGGGTGCAGCGACGCGTGCGTGCTGCGGCCGAGCATCGAG
TGGATCGACGGCGCGCAGCCGCAGGCCAACGCCACCGTCTTCGTCGCCAAGTTCTTCGGC
CGCGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCTCTCCACCATCGTCCAGCGCTGTTC
CGGTCGCTTCTGTACGAGGCGTGCGGGCGGACGATAAACCCGGTGAGCGGCGCCATCGGG
CTCATGTGGACGGGCAACTGGGACCTCTGCCAGgccgccgccgacgccgtcctccgcggc
gactccctccgcgccctctcggccgtgccagccgccttcaccgaccgcgacatggccggc
ctctacggcaacgtcggcgccgccgccgggacctcctcctcctcgcccgacaacgacaac
tcctccgcctccgccgcgccccggaggaagcggcccaggaataacggcgccggcgccggc
gtcggtcagcagcagctgccgcacgcggtggctgcggtgctccagtcctgcgagctggac
CTCTGCCTCACGCCCGTCTCACCGCCGGCCGTGCAGCTGGTGGGTGGGGGCGGCGGCGCG
TCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCGACGGGGATGGCGCCGGGGCG
CCCACGCTGCTGAACCTCTTCAGCTGATCCTGATCGATCGATCCAGAGCTGTACGTACGT
AATTGTAAGCTAATTAATTATGCTTAATTTGTAGTGGCAACTGTGCAGAGAGGGTGAGGG
TTCAATCGATCGATCACCAGGTCGGCTGTGTGGTGATTAATTATATTAGTTGCATCTGTA
TTGATTAGTTGAGCCTTTTTTGGTCATGTGCAACTTAATTGGTTTTGTAGTGATCAATGC
TAGCTGCAGACTATTAACTGTGGA

CDS

699 bp

>Os03t0609500-01 LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein, Transcriptional activator, Regulation of heading date and yield
ATGAGCTGCAACGGGTGCCGCGTGCTGCGGAAGGGGTGCAGCGACGCGTGCGTGCTGCGG
CCGAGCATCGAGTGGATCGACGGCGCGCAGCCGCAGGCCAACGCCACCGTCTTCGTCGCC
AAGTTCTTCGGCCGCGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCTCTCCACCATCGT
CCAGCGCTGTTCCGGTCGCTTCTGTACGAGGCGTGCGGGCGGACGATAAACCCGGTGAGC
GGCGCCATCGGGCTCATGTGGACGGGCAACTGGGACCTCTGCCAGgccgccgccgacgcc
gtcctccgcggcgactccctccgcgccctctcggccgtgccagccgccttcaccgaccgc
gacatggccggcctctacggcaacgtcggcgccgccgccgggacctcctcctcctcgccc
gacaacgacaactcctccgcctccgccgcgccccggaggaagcggcccaggaataacggc
gccggcgccggcgtcggtcagcagcagctgccgcacgcggtggctgcggtgctccagtcc
tgcgagctggacCTCTGCCTCACGCCCGTCTCACCGCCGGCCGTGCAGCTGGTGGGTGGG
GGCGGCGGCGCGTCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCGACGGGGAT
GGCGCCGGGGCGCCCACGCTGCTGAACCTCTTCAGCTGA

Protein

233 aa

>Os03t0609500-01 LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein, Transcriptional activator, Regulation of heading date and yield
MSCNGCRVLRKGCSDACVLRPSIEWIDGAQPQANATVFVAKFFGRAGLVASLAAVPLHHR
PALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAVLRGDSLRALSAVPAAFTDR
DMAGLYGNVGAAAGTSSSSPDNDNSSASAAPRRKRPRNNGAGAGVGQQQLPHAVAAVLQS
CELDLCLTPVSPPAVQLVGGGGGASDEHSTTTCEEASDGDGAGAPTLLNLFS*

5'UTR

chr03:22979696..22979863 (- strand) : 168 bp

CDS

chr03:22979512..22979695 (- strand) : 184 bp

chr03:22977192..22977706 (- strand) : 515 bp

3'UTR

chr03:22976955..22977191 (- strand) : 237 bp

FASTA

>Os03t0609500-01 class=Sequence position=chr03:22976955..22979863 (- strand)
ATTGGACATT TGTTCTCAGC TTCAGCTCGG CCCCCGTCTT CTCATCACCA GCTCAGCTGT GGCCGGCCGC GCGCGATCCA
AGTTGCTAGC TAGCTAAGCT TTTGTAACTG AGAGTGAGCT AGCTAGGTAG CTGGGTATTG GGTATTATAT TGCGAGAGAT
AGAGAGAGAT GAGCTGCAAC GGGTGCCGCG TGCTGCGGAA GGGGTGCAGC GACGCGTGCG TGCTGCGGCC GAGCATCGAG
TGGATCGACG GCGCGCAGCC GCAGGCCAAC GCCACCGTCT TCGTCGCCAA GTTCTTCGGC CGCGCCGGCC TCGTCGCCTC
CCTCGCCGCC GTCCCTCTCC ACCATCGTCC AGGTATATAC CCTTCGATCG ATTCCATCGC TCCTCATCTC CCCTTAATTA
AGGCCTACCT TAACTCTTAA TTTCTTGCCT CCATTTCGAG CTAATTATTG TGTCCGCAAA CTTAACTAGG TACAGTAGTG
GTAAATTACG AGGTTACAAA TCTAATGTTC GTTGTGTACT TTGTAATTTA AGCAATTCTC AGATATCGGT TTCTGAAAAC
AGTCCAGACA ATCAATCACA GTTAAGCTGT CAATTACTGT GTTTGGAAAT ACAGTGCAAG TTCTCGGTTT ACTAGCTCTA
ATTAAGTCGT TGCTTATAAT TAGCTTAGAG GCCGGGCTTG TTCATCGGTC ACAATTAGTA CACCTCTATC ATGTAGTAGT
TGCAGTAAAT TACTCCACTT GTTAAGGAAA AAGGCTAGAA ATTAACTAGA AAAAAATATT TTCTCAGGTT TTATCTAGAT
GAACAATTAG TGCAGAAAGA CTTGTGACTA CTAGAGCTGA CCTAACACCA AAGATGGAGT CGTGATACCA GTACTtatat
atatatatat atatatatat atatatatat atatatatat atatatatag taaatttgtt tggtgctcca tggtgcccgg
gcaccattgt tgaaattgag tatataccca attcaaatga gcatgaaact ttttcaatta tttaggtatt aatattaact
actttactaa ctagttgaaa gcaagtttga actgaatttg aacttgtttt tgttagattt tgattctagg tatatagcat
ccatacatat aattagttag gtatgtaatc atggattgtg aaataaagtt aaatttgagt tgttttgttg ataggtatag
gtatgaattg aattcttata actaggtata tactcacaat ttgaaaattt taaaaaattt gagtgatttt gtgcatttga
aaccatggtg cccgggcacc atggtgcccc atatgagtgt cctatatata tatatatata tatatatata tatatatTTG
GTGTTCCCTT TTAATTTGGA TGTTATGCGG CCTTCCGACG CCTCCAGGGG ACAATCCGAA TAGAGAATCT TTTTCAGCCA
TGTCCCCAAC TGTACTTCAC CAAACTAAAC TCCTCTTCAG AGACTCCTAG TGCCAAGAGA TATGTTAGTT TAGTTGACAG
TTTCTTTCTT TTGTTTGTTT AGAGCCCAAT TGGCGTAGTT TGCTTTCGGC TTTTGTCATC AGGTCAATTG GTATCTTTTG
ATCCTCACAC TGAAATGAAC CTAGATTATT ACTCTGCATT AACACAATAA ACAAACACAG AAACATATTT ATTAATATTA
TCGGTATTTC TGAAGTTATT TTTAGAATta gagatttgct ctggtccaat aaaaagtatc tcgaggtacc ggtacttaca
cagtactaga ttgcttccaa tggttggttc taggccaatg aatttttgtt ggatcctgcc tagctaaaca atttactacc
gtgaggtacc ggtatctcga ggaacttttt tttgaaccag agcaaatctc tTAGAAGTAG GTAAATGAAT TTTTGCCAAA
TACATCAAAA TTGAACTGAA TTAATTCCTG TGAACTGATC TCTGAATAAA TTGTTTGTAG ACAATTTATG ATGTCCAGAT
AAATCATGAG GTTGAAATTG GTGAAGTAGG AACCACTTGA TAGATTAGGC ATATATTAAT TCCTGATTGA AACTTGGGTG
GTTAATCTCT GAATTTAAAT TTAAATGGAT GAATATATTG ACGTGTGAAG TTGTGTTGCT TGGATGGATG GATGCAGCGC
TGTTCCGGTC GCTTCTGTAC GAGGCGTGCG GGCGGACGAT AAACCCGGTG AGCGGCGCCA TCGGGCTCAT GTGGACGGGC
AACTGGGACC TCTGCCAGgc cgccgccgac gccgtcctcc gcggcgactc cctccgcgcc ctctcggccg tgccagccgc
cttcaccgac cgcgacatgg ccggcctcta cggcaacgtc ggcgccgccg ccgggacctc ctcctcctcg cccgacaacg
acaactcctc cgcctccgcc gcgccccgga ggaagcggcc caggaataac ggcgccggcg ccggcgtcgg tcagcagcag
ctgccgcacg cggtggctgc ggtgctccag tcctgcgagc tggacCTCTG CCTCACGCCC GTCTCACCGC CGGCCGTGCA
GCTGGTGGGT GGGGGCGGCG GCGCGTCGGA CGAGCACTCG ACGACGACGT GCGAGGAAGC CAGCGACGGG GATGGCGCCG
GGGCGCCCAC GCTGCTGAAC CTCTTCAGCT GATCCTGATC GATCGATCCA GAGCTGTACG TACGTAATTG TAAGCTAATT
AATTATGCTT AATTTGTAGT GGCAACTGTG CAGAGAGGGT GAGGGTTCAA TCGATCGATC ACCAGGTCGG CTGTGTGGTG
ATTAATTATA TTAGTTGCAT CTGTATTGAT TAGTTGAGCC TTTTTTGGTC ATGTGCAACT TAATTGGTTT TGTAGTGATC
AATGCTAGCT GCAGACTATT AACTGTGGA

Locus: Os03g0609500

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Locus: Os03g0609500

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