Locus
Os03g0681400
Description
Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42).
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
UBC25
CGSNL Gene Name
UBIQUITIN-CONJUGATING ENZYME 25
Oryzabase Gene Symbol Synonym(s)
OsUBC25
Oryzabase Gene Name Synonym(s)
Ubiquitin-conjugating enzyme 25
Transcript Evidence
AK103809 (DDBJ, Best hit)
Protein Evidence
B9HFA8 (UniProt)
Literature
Note
Manual Curation
Gene Ontology (GO)
Molecular Function: acid-amino acid ligase activity (GO:0016881)
Functional domain (InterPro)
Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Full-length cDNA
J033147A12 (Online Clone Ordering)
Expression Databases
TENOR (Os03t0681400-01)
RiceXPro (AK103809)
Others
Oryzabase (19565)
Transcript |
793 bp |
>Os03t0681400-01 Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42). GCACACCTTTCCCCCCCTCTCTCCCTCCCTCCTCCGCCATCCCTAGCAGCCGCCCCGCAC CCGCGCCCGCACCATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGC GTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAA GCACAAGGTCACCGACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCAC GCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGA GGCTCCCCAGGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGG GCATATCTGTTTAGATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGT TTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAA TGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTT TCATGATGACAAAGTGTGATTGGTTCCAACTTCCGGTTGGCTTCTCCTCAGCAACCCTTT TACCCGCCACCCTACCTTTACATGGCGTCCTCCATGGGAGATGATTTAGGCATATTTTTA AGCGATCTATTTGACCGCAAATTAACATGCCTTTGTGGTTTGTAAATGAATGTGAACCTG TATCGAATCCTAGACTTATTAATTACTATACCTTGGATATATAGAATAATTACATGTGTA TCTTGCTTATTGC
CDS |
486 bp |
>Os03t0681400-01 Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42). ATGACGAGCTCCTCCTCCCCTTCCCGCAAGGTGCTGAGCAAGATCGCGTGCAACCGGCTG CAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACC GACAATCTCCAGAGGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGA GAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGGTC ATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTA GATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATC TTGTCCATGTTGTCAAGCTCACCAGCAAAGCAACGTCCTGCCGACAATGATCGCTATGTC AGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAA GTGTGA
Protein |
161 aa |
>Os03t0681400-01 Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42). MTSSSSPSRKVLSKIACNRLQKELAEWQVNPPSGFKHKVTDNLQRWVIEVAGAAGTLYAG ETYQLQVDFPEHYPMEAPQVIFLHPAPMHPHIYSNGHICLDILYDSWSPAMTVSSVCISI LSMLSSSPAKQRPADNDRYVRNCRNGRSPKETRWWFHDDKV*
5'UTR
chr03:27116364..27116436 (- strand) : 73 bp
CDS
chr03:27116334..27116363 (- strand) : 30 bp
chr03:27116080..27116183 (- strand) : 104 bp
chr03:27115672..27115774 (- strand) : 103 bp
chr03:27115496..27115559 (- strand) : 64 bp
chr03:27111910..27111998 (- strand) : 89 bp
chr03:27111729..27111824 (- strand) : 96 bp
3'UTR
chr03:27111495..27111728 (- strand) : 234 bp
FASTA
>Os03t0681400-01 class=Sequence position=chr03:27111495..27116436 (- strand) GCACACCTTT CCCCCCCTCT CTCCCTCCCT CCTCCGCCAT CCCTAGCAGC CGCCCCGCAC CCGCGCCCGC ACCATGACGA GCTCCTCCTC CCCTTCCCGC AAGGTACCAA ACCCTAACCC TAACCCCCTC CTCTCTACCC TCATCCCCTC CGGATCCCAT CTCCCCTCCG CCCCGATTCG CCGTAATTTG TTTTGGGGGT TTTTTTCTCT CTCTCTCTGA GCTGTTTGTG TGTGTGTATG TGTGTTCGTG CAGGTGCTGA GCAAGATCGC GTGCAACCGG CTGCAGAAGG AGCTCGCGGA GTGGCAGGTC AACCCTCCCT CCGGCTTCAA GCACAAGGTC ACCGACAATC TCCAGAGGTG ACCCCCCCCC TCCCCCGCGA CCACTCCAAA CCCACGCGGT TTTTGTCCTT GCCGCTTTCG CGTTTCGTCT CTTTCCCTTT CGATTCAGAT GAAATCGCAA ACCCTTTTCG GCGTCCTGAT TGACCCAGGA TCTCCTTTTT TTCTATGAGG GTTTTGGCCG CGTAGTCGTG AAATATTCAG TCGTTCATGT TCTTGTATGA TTTATTTATT TTCAACTTTG ATACTTTCTT GTGATTTTTT ATCCATGTGA AAAGCATGAA AAATAATATA TCATGATATG GATTATTCCG AAATAAAAAA AGGTGGGTCA TCGAGGTCGC GGGGGCTGCG GGCACGCTCT ATGCCGGAGA GACATACCAA TTGCAGGTGG ACTTCCCTGA GCATTACCCC ATGGAGGCTC CCCAGGTGGG ATTTCTTGCC TTCTCTTTAT ACTATTTATT TATACTGTGT TTAGTTTGGG TATACTGCAT GCACTGGAAT CCAACGCTTT GGGTTTGATC GACTTGTTTT TCTGTAGGTC ATATTTCTTC ATCCAGCGCC AATGCATCCG CACATTTACA GCAATGGGCA TATCTGTTTA GGTAAAATGA TTGTATGCTC CTATTGATGC ATAAATAATT GTTGTTTTCG TTCTTGATGC TTTTGCCCAC TCCATTAATT CTCTTGGGTG TACAGCATTT TTACTGGACC TGTTTTACAG TTTTAGCATG TCCACGAAAT ATGCCTTTCT GTCTTGCTAA TGAAAGCTGC CATCTTCAAT GGCAAGCATA ATACTTAGGA GTTTAAAGTA GTAAATAACT AGGGTAGTAA CTGTATGATA AGTTTTAAAC ACATTTAGCT ATCCCAGCTG TACCTTTTAA CTTTATATAT GCTGGGAAGT GTACAAACTT AGAAAGTAAC ACTTGAAGTC CTTAGATATG GGTGTATGGG CATAGAGGAA GTGACTAGAA TATAGGTGGA TTAACCTTAT CCACTTCTAT TTGTCTAGGG TAATCCTGTG TTAGATAATG TTGACCAAGA TCAACACTTG TCTCTTCCAC CACCACATGT TGTTTTTAGC ACCTTTGCAT ATCCTCTTGT CGTTCATGAT CAAGAACTCC CAACTTTTTG ACACATCTGG GCAATTCTGC TATTATGTTC CTGATTGACA TTTAACAATT TGACTATTGG CTGTGCTGTG ATGTCTGGTC TGTTCATGGA GGTTCTGGAT GTAGTTAAGC TGAAATTCTA GCCTATGTGG TTATCTAGTT AAATTTATCC TTAAGAGGCT GCACCCCTTA TTTAGTGGAA GTTCTCTTGT AAGTTACAAC ACACAAGTTA ATTGATGTGT ACTATGTACT TTATGTAATT CCTTGATGCA TTGAAATGGA TGGTTACAAA CTTTCCGGTG GATTGGTAAA ATAGTTTATG ATAGAGCGGT GTTGAGATGA ACCATTCAAT AAATTCTCCC AACGTAGCAA ACCTGTACAA TAAGATGTCT TGTACTCAAC AATTTTTACA AGATGTTATG AAACACATAA TACATGCCTG CCAGATACCT CAAGTTATTA GATGTTATTG TTGTGCATAT ATTCTAATGG TGGGATATTC CAAAATTTTC TTGTATTAAT GGGACAATAC TGTACATTGT CATCGGATAT TGTCCTGCCT GCTGTGAAAT GTTCAATCCA GTGTAGATTG CTAAGTGTAC AGAATCTAAC TAGTTTGTCA TCCTTTTCAA GAAAAATGGT TGCCCATGAT ATAAGCATTC CCACTATCAG CTTACATTAA TATTGGCAAG CACAAGTCCT CTGCAGTATT ACTTCTCTAG TTAAAGCAAT GCCTTTTTGC AGATGTATAT GCAGCAGATG CACCCTAGAA AATTTTCAAA TCTTGAGCAT CCTGACCATG GTTCAAGAAG GCGCTAGTTG GGTGACTGGG GGGCGCCTCG GTCAGGCCAG ATAGTCAAAT CCAAGAAATT AGCAAGCATA TTGCATAAAA CTTGGACTTC ATAACACTAA AATAGCAACA GAACACCACC CACGTTAGTT CAGCCGCCTA ATGCACCATC TAATACTTAA TCGTGGCGGC TACCTAGTGC ATAGAGCCAA CTTTTAGAAA ACTGATCTTG ACTCCCAAGT TGCTCATATT TAACGGCTTA CCCATAGTAT AAAAATCCAC CAGACGGCAA GCCGGCACAA CTCGTGGTTC ACAGCAACCC CCACTGCCAC CCCCCCTCCC CCCCAGCACA CACACACACA CACTGCCTGG TCCCACTGTT GGACTGCTGA ACCATGGCTC ACTAAAATCG ATACCGATGT ATATTCTCCA TGTAACACAA GTGATTTGCT ACCTGGATGG TTGAAGGGCA GCAGCTGCAG GTTGCTCACC AGTGTTCTAT CCTCTGCCTC CTTTTTTTTC TCATAACTGG GCCTAACTTG CCATTCACTG ATGAGCCGTG CGGTTTATGA TCCGTTTCCA TTGGTTCACC AGTTCTTAGA AAAACCATCT GGTTTTCCTG GTTTACTCTC CTGTCCAATA GCAGAAGCGA TCCTTCACAC AAACCAAACC GGAAGGGATG CTGGTTAAGT ATGATGGTGC ACCTTCCTCT TTTTTAACTG AATTATTGTC TTTTCAACTT TGCAAACATT CAGTTCCTTT CCTAATGCAG TGATGCCACT TTTTGGAATG ATTGTTTTGC TACTTTATTT GTCTATCACT CCACCTGTCT AGTTCAGTAC AAAATGAAAT TTGGTGAATT GAGTTGTGCA TTTGCATTCC CCTTTACTTT CTAACATTAA TATAACCATG TTTTGACTTT TAATGCAATA CATGACCAGA GGAATGCCTC CTTTTATGCA AAGAGCATGT GTTTTGTAGG TGAAAGGTAT CTATTACACC ATACAAATGA ATCTAGCATG GCTCAATGCA TTTAATTCCC TTACTATGTG TGCTGGATAA CCTTTTTTCC CGGTTTGATG GTGTGGCTTG TTTGTTTTTT CCTGTCAACT AGCGACATAC CCATGCTTTG CTATTGGCAG AAGAAACAAA ATATTATTGT ATGTCATAGT AAAACATATT TTATCAAATA TCTTAGCATC ACTTGTTTGC TTAttttatt atctgatact agaaaaaatg cccgtgcgtt gcaatcggtg aaggctattt taattttatt attgttatac ggtttagcta aggtgaaatt cactacggga atttgcttgg atatatgtta gaaaatcatg agctgcaatt aggagtacga ctcatgtctc aagttagtat gcgaattttt tttaaagaga tttcttatat gactcctgta tttccaaaag cgaataaact taaaaaaacc aactcaaaca cagatctgta tttccaaaag caaacaaact taaaaaccga ctcaaacacg gatgacgtac gaaagtaccg gcaaaaacat cttcaatttt tataatagtg gagATttact tgattggacc aaatattgga ctattccata atattagaaa atatcatgga acaatttgta aaaactgcta aagCAATAGC GGGGTGGCAG ATTCATTGCC ACCACCACTT GAGGCTTTTA AATAAGTTTA TATATTGGTT AATTGCCACG TTAATTTCTA GGTTATTTTT TAGGGCAAAG CAGGGCTAAA TTTATTACTT GGAGAATATG ATGGATATGC TTCCGAGCTT TTTGCTGGCC TATGTTATCA AGAATTCAAG AGATGTCTTT CTAAAATAAA GGACCGAAAC CTGCGATTTG GTGACACAAA ATACCTTGCA TGCCTTTTTT TTTTTTTGTA ATTCTGGACC CTAAAAATGC TAAATTTTGC CCCCTTTTTA TTTTTTTTCT TTGTACACAT TGTTTGGAAA GTCTACTCAC GATTGCCTTT ATAATTTGAA GTTTTGAACC TAACCAGCGA GAAAATGGAA ATCTAATGGA CTACTTGGGT TGCCTTAGTG GTTGTATTTT TGCTTGGATG GGTTCTGGAA TTTTTGTCCA CCTACCATCT TTGTTTAACA ATTAACATGT CAATTTGACC GCAGATATAT TGTTTACTGT TGTTTCACTT GTCTGCAGAT ATATTGTATG ACTCGTGGTC ACCGGCGATG ACCGTTAGTT CTGTTTGTAT CAGTATCTTG TCCATGTTGT CAAGCTCACC AGCAAAGGTT ATAGAGCTTC ACTGTGTCCT CTCCTGTTTA AATGGAGATC ATGCATCTGA CCATATTATA TGTTTATTAT ATGTTGGTGC AGCAACGTCC TGCCGACAAT GATCGCTATG TCAGGAACTG CCGCAATGGG AGGTCGCCGA AGGAGACCAG GTGGTGGTTT CATGATGACA AAGTGTGATT GGTTCCAACT TCCGGTTGGC TTCTCCTCAG CAACCCTTTT ACCCGCCACC CTACCTTTAC ATGGCGTCCT CCATGGGAGA TGATTTAGGC ATATTTTTAA GCGATCTATT TGACCGCAAA TTAACATGCC TTTGTGGTTT GTAAATGAAT GTGAACCTGT ATCGAATCCT AGACTTATTA ATTACTATAC CTTGGATATA TAGAATAATT ACATGTGTAT CTTGCTTATT GC
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