Locus
Os04g0469800
Description
Cytochrome P450 superfamily protein, CYP724B1, Brassinosteroid (BR) biosynthesis, Control of panicle architecture and seed size
RAP-DB Gene Symbol Synonym(s)
D11, d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1
RAP-DB Gene Name Synonym(s)
DWARF SHINKANEAIKOKU OR NOHRIN 28, shinkaneaikoku or nohrin 28 dwarf, DWARF SHINKANEAIKOKU OR NOHRIN 28, OsDWARF11, dwarf-11, Cytochrome P450 724B1, Dwarf protein 11, cytochrome P450 CYP724B1, DWARF11, CLUSTERED PRIMARY BRANCH 1
CGSNL Gene Symbol
D11
CGSNL Gene Name
DWARF SHINKANEAIKOKU OR NOHRIN 28
Oryzabase Gene Symbol Synonym(s)
d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
Oryzabase Gene Name Synonym(s)
shinkaneaikoku or nohrin 28 dwarf, DWARF SHINKANEAIKOKU OR NOHRIN 28, OsDWARF11, dwarf-11, Cytochrome P450 724B1, Dwarf protein 11, cytochrome P450 CYP724B1, DWARF11, grain number and size on chromosome 4, Panicle Morphology Mutant 1, Notched Belly Grain 4, CLUSTERED PRIMARY BRANCH 1
Transcript Evidence
Protein Evidence
Literature
PMID: 15705958
PMID: 25923523
Note
Manual Curation
February 3, 2016
Gene Ontology (GO)
Biological Process: iron ion transport (GO:0006826)
Biological Process: cellular iron ion homeostasis (GO:0006879)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: ferric iron binding (GO:0008199)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
Functional domain (InterPro)
Bacterioferritin (IPR002024)
Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Full-length cDNA
002-107-G06 (Online Clone Ordering)
002-172-F03 (Online Clone Ordering)
Expression Databases
TENOR (Os04t0469800-01)
RiceXPro (AK106528)
Others
Oryzabase (608)
Transcript |
2024 bp |
>Os04t0469800-01 Cytochrome P450 superfamily protein, CYP724B1, Brassinosteroid (BR) biosynthesis, Control of panicle architecture and seed size AGAGAAAAATAGAGGGAGGGAGAGGGAGAGAAGCAGAGTGTTGAGCACAAGCTAGTGAAA GGGTTAGATAGAAACTTGGTAGAATAGACAGATAGGCAGAGAGAGAGAGAGAGCTTAGCA AGCTAAGGCTTAGCTGCTGCAAGGCTCCATCCATGCTTCTTGTTGTGAGATGAGATTGAG ATAAGATGAGCAGGGGGTGGTGGTGCCTGGTGTGAGGCTATAGGTAAGATGGTGGGAGGA GAGCTTGTGCTGGCTGCTCTGGTGATCCTGCTTGCTTTGCTGCTGACCCTGGTGCTGAGC CACTTCCTGCCTTTGCTCCTGAATCCCAAGGCTCCCAAGGGAAGCTTTGGGTGGCCTCTC CTTGGTGAGACGCTGAGGTTCCTCAGTCCTCATGCTAGCAACACCCTGGGCAGCTTCCTG GAGGATCACTGCTCCAGGTATGGGAGGGTGTTTAAGTCCCATCTGTTCTGCACCCCCACC ATAGTGTCCTGTGACCAGGAGCTGAACCACTTCATCCTTCAGAATGAGGAGAGGCTGTTT CAGTGCAGCTACCCCAGGCCAATTCATGGCATTCTGGGCAAGTCCTCCATGTTAGTGGTC CTAGGGGAGGACCACAAGAGGCTCAGGAACCTTGCTCTAGCACTGGTCACCTCCACAAAG CTCAAGCCCAGCTACCTTGGCGACATTGAGAAGATTGCACTGCATATAGTTGGGTCATGG CATGGCAAGAGCAAGGACAAGGGGATGGTCAATGTCATCGCCTTCTGCGAGGAGGCAAGA AAGTTTGCATTCAGTGTAATAGTGAAGCAGGTGCTGGGGCTATCACCAGAGGAGCCGGTC ACTGCCATGATACTTGAAGATTTCCTCGCCTTCATGAAGGGTCTCATCTCTTTCCCTCTC TACATCCCAGGGACGCCCTATGCCAAAGCTGTGCAGGCCAGAGCGAGGATATCAAGCACT GTGAAGGGTATTATTGAGGAGAGGAGGAATGCTGGCTCCAGCAACAAGGGTGATTTCCTT GATGTGCTGCTTTCAAGCAATGAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGAT TCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTT GGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAG AAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACAT GTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTC AAAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTC AGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGA TGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGG CTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTG CTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAG TTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGC AGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGG GCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTT CAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAG ATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGT GGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCT ATAGAAGAAAAAAAAAAGAAGAAAATTGGGCTATTGGGCTATTG
CDS |
1443 bp |
>Os04t0469800-01 Cytochrome P450 superfamily protein, CYP724B1, Brassinosteroid (BR) biosynthesis, Control of panicle architecture and seed size ATGGTGGGAGGAGAGCTTGTGCTGGCTGCTCTGGTGATCCTGCTTGCTTTGCTGCTGACC CTGGTGCTGAGCCACTTCCTGCCTTTGCTCCTGAATCCCAAGGCTCCCAAGGGAAGCTTT GGGTGGCCTCTCCTTGGTGAGACGCTGAGGTTCCTCAGTCCTCATGCTAGCAACACCCTG GGCAGCTTCCTGGAGGATCACTGCTCCAGGTATGGGAGGGTGTTTAAGTCCCATCTGTTC TGCACCCCCACCATAGTGTCCTGTGACCAGGAGCTGAACCACTTCATCCTTCAGAATGAG GAGAGGCTGTTTCAGTGCAGCTACCCCAGGCCAATTCATGGCATTCTGGGCAAGTCCTCC ATGTTAGTGGTCCTAGGGGAGGACCACAAGAGGCTCAGGAACCTTGCTCTAGCACTGGTC ACCTCCACAAAGCTCAAGCCCAGCTACCTTGGCGACATTGAGAAGATTGCACTGCATATA GTTGGGTCATGGCATGGCAAGAGCAAGGACAAGGGGATGGTCAATGTCATCGCCTTCTGC GAGGAGGCAAGAAAGTTTGCATTCAGTGTAATAGTGAAGCAGGTGCTGGGGCTATCACCA GAGGAGCCGGTCACTGCCATGATACTTGAAGATTTCCTCGCCTTCATGAAGGGTCTCATC TCTTTCCCTCTCTACATCCCAGGGACGCCCTATGCCAAAGCTGTGCAGGCCAGAGCGAGG ATATCAAGCACTGTGAAGGGTATTATTGAGGAGAGGAGGAATGCTGGCTCCAGCAACAAG GGTGATTTCCTTGATGTGCTGCTTTCAAGCAATGAGCTCTCTGATGAGGAGAAAGTGAGC TTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTT GTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGC ATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAA TATACCCAACATGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCAC AGGAAGGCTCTCAAAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTC CTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTT CAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGC GGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTC CATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATAC CCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCC TGA
Protein |
480 aa |
>Os04t0469800-01 Cytochrome P450 superfamily protein, CYP724B1, Brassinosteroid (BR) biosynthesis, Control of panicle architecture and seed size MVGGELVLAALVILLALLLTLVLSHFLPLLLNPKAPKGSFGWPLLGETLRFLSPHASNTL GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERLFQCSYPRPIHGILGKSS MLVVLGEDHKRLRNLALALVTSTKLKPSYLGDIEKIALHIVGSWHGKSKDKGMVNVIAFC EEARKFAFSVIVKQVLGLSPEEPVTAMILEDFLAFMKGLISFPLYIPGTPYAKAVQARAR ISSTVKGIIEERRNAGSSNKGDFLDVLLSSNELSDEEKVSFVLDSLLGGYETTSLLISMV VYFLGQSAQDLELVKREHEGIRSKKEKDEFLSSEDYKKMEYTQHVINEALRCGNIVKFVH RKALKDVRYKEYLIPSGWKVLPVFSAVHLNPLLHGNAQQFQPCRWEGASQGTSKKFTPFG GGPRLCPGSELAKVEAAFFLHHLVLNYRWRIDGDDIPMAYPYVEFQRGLPIEIEPLCSES *
5'UTR
chr04:23471365..23471592 (- strand) : 228 bp
CDS
chr04:23471156..23471364 (- strand) : 209 bp
chr04:23470453..23470798 (- strand) : 346 bp
chr04:23470069..23470223 (- strand) : 155 bp
chr04:23469715..23469949 (- strand) : 235 bp
chr04:23469526..23469612 (- strand) : 87 bp
chr04:23469158..23469236 (- strand) : 79 bp
chr04:23468865..23468971 (- strand) : 107 bp
chr04:23468283..23468407 (- strand) : 125 bp
chr04:23467520..23467619 (- strand) : 100 bp
3'UTR
chr04:23467167..23467519 (- strand) : 353 bp
FASTA
>Os04t0469800-01 class=Sequence position=chr04:23467167..23471592 (- strand) AGAGAAAAAT AGAGGGAGGG AGAGGGAGAG AAGCAGAGTG TTGAGCACAA GCTAGTGAAA GGGTTAGATA GAAACTTGGT AGAATAGACA GATAGGCAGA GAGAGAGAGA GAGCTTAGCA AGCTAAGGCT TAGCTGCTGC AAGGCTCCAT CCATGCTTCT TGTTGTGAGA TGAGATTGAG ATAAGATGAG CAGGGGGTGG TGGTGCCTGG TGTGAGGCTA TAGGTAAGAT GGTGGGAGGA GAGCTTGTGC TGGCTGCTCT GGTGATCCTG CTTGCTTTGC TGCTGACCCT GGTGCTGAGC CACTTCCTGC CTTTGCTCCT GAATCCCAAG GCTCCCAAGG GAAGCTTTGG GTGGCCTCTC CTTGGTGAGA CGCTGAGGTT CCTCAGTCCT CATGCTAGCA ACACCCTGGG CAGCTTCCTG GAGGATCACT GCTCCAGGTA AATTAAAATC ATATGCAGTA AACATTTCTA TCAGTATCAC CACCACAACC ACACAGGAGC AACAAGTGTC ATCTTACCAT GCAATTAAGT ACTGTACCAT TATTTCATGT GACAGCACAA GGTAATGCTG CTGTCCTGTC CCAGCAGCTT TATCACGCCC TTTTTTTTCC TCCCTGATGA GGGGGGTGCT GTAACATGAA TTGGACAGTG TTTAGCATCT TGTTAAAGAG TTGTGCAAAC CTTTTCTTCC GATGAACAAG CGAGAGAAAA GGAATGTAAA GGTTGCACAA CACTTAACTA GCTAGCATGC ATGGTGGTAG TAACACTGAT GATGGTGTGA TGATGATGAT GCAGGTATGG GAGGGTGTTT AAGTCCCATC TGTTCTGCAC CCCCACCATA GTGTCCTGTG ACCAGGAGCT GAACCACTTC ATCCTTCAGA ATGAGGAGAG GCTGTTTCAG TGCAGCTACC CCAGGCCAAT TCATGGCATT CTGGGCAAGT CCTCCATGTT AGTGGTCCTA GGGGAGGACC ACAAGAGGCT CAGGAACCTT GCTCTAGCAC TGGTCACCTC CACAAAGCTC AAGCCCAGCT ACCTTGGCGA CATTGAGAAG ATTGCACTGC ATATAGTTGG GTCATGGCAT GGCAAGAGCA AGGACAAGGG GATGGTCAAT GTCATCGCCT TCTGCGAGGA GGCAAGAAAG GTTAGCAAGT GTACTAACTT GAAACCAGAG CCATATCACC ACAAGGACAT GATCCCTTGA AACAAGGGAG GGAAAACTTT GCACATGTTA GCTACATACC ATCATCATCA TGTTGTTACT TGCTGCTGCA TGAATCTTTG TCCCAAGGTC ACTTTGACTT ACCATGGTCT TTTTTACCTT TTCTTTTTTT TTCTCTCTCT GGTGTGCTCT CTTTCCTTGA GAACCACAGT TTGCATTCAG TGTAATAGTG AAGCAGGTGC TGGGGCTATC ACCAGAGGAG CCGGTCACTG CCATGATACT TGAAGATTTC CTCGCCTTCA TGAAGGGTCT CATCTCTTTC CCTCTCTACA TCCCAGGGAC GCCCTATGCC AAAGCTGTGC AGGCATGCAA CTCAACATCT CATTTACACA AGTCGTTAAA CTGTCAATAA AATTTTCAGG CCATTTTATT TTTGTATACT TACCATAATA ACTTCATCCT TTTGTCCGCG AATCCTCACA GGCCAGAGCG AGGATATCAA GCACTGTGAA GGGTATTATT GAGGAGAGGA GGAATGCTGG CTCCAGCAAC AAGGGTGATT TCCTTGATGT GCTGCTTTCA AGCAATGAGC TCTCTGATGA GGAGAAAGTG AGCTTTGTGC TGGATTCCTT ACTGGGAGGA TATGAGACCA CCTCACTCTT GATCTCCATG GTTGTGTATT TCCTTGGGCA GTCAGCTCAA GATCTGGAAC TAGTGAAGGT ATACAGACTT CTCATGCTGA AAAAGACAGA GCAGTACTGG TAAATAAGTA CTTAATTAAG TGGCCATCAA TAAAATATAT ATTAACATGT TTGCATGCAG AGGGAGCATG AAGGCATAAG ATCGAAGAAA GAGAAGGACG AGTTCTTGAG CTCTGAAGAC TATAAGAAGA TGGAATATAC CCAACATGTA AGATGATCGT TCAATACATG CTTTAGGATT AGTTAGTAAG CCAGGGGTAC CTTTTTTTCC TATTATCAGC AACTACACAA ATATGTGACC CTCCGAATAT GAGGTTTACT CATATTCAGA ACGATTCTCC TATGCCTACC CATATATGCA ATTTTTGAAT TAAGCAAAAA AAAGAAAAAG AAACAGAGAG AGAAAGAATC TCATTACAAT AGAGTGAAAA GGGCGGAAGG GACATGTTCT TCAATAATGG AAACTGTATG ATGATGCATA TGCTATGCCC TTACAGGTTA TCAATGAGGC ACTGAGATGT GGCAACATTG TCAAGTTTGT CCACAGGAAG GCTCTCAAAG ATGTCAGATA CAAAGGTAAT TAACCCTACT TGAGGCTTTC CTTGAAGATT CCATTGTGCT CATCACATGA TAATGGATCA GGCAAAGTGG ATGGTTGCAC CTTTATTACT GATTTTTAAG CATTGTTATT CCTAAAATAC CTCAGCTTTT CATAGAAGAT GCTCAAAAGC AAGTGGCTCT TTTTTCTTTG CTCTGTTGCA GAGTATCTGA TTCCTTCTGG TTGGAAGGTC CTACCTGTTT TCAGTGCTGT TCATTTGAAC CCCTTACTTC ATGGAAATGC CCAACAATTT CAGCCCTGCA GATGGGAGGT ACGTTTGTTT CCATAATCTG TGAATGCTCC GCAATACTTA CTAAATGTTT ATTGTTAATG ACCTAATGAA AAATGTTTTG GACCAGCTAG GCCACGAAGC TTAGCTTTCA CGTAGTATAC TTTTCTATAA TACAAATTTA TAAAATGAAA AGTTCAGAGC ACCTATCAAG AGAGCTTATC TGGAGCCTTG AAAGAATCTT CTTTAAAGGG TGTTCTCTAA CTAATTGCTA CCTTTAATTA GTGAGCGCCC AACTATGACA TAATTACTCG CAACTATTCT GGTGTCTTCA GATGCCAAAC AAGCTCCCTG TGGCTGCAAT GCCTTTTGTG CATGGTCCTA ACCATGATTC CTCTCATTCA AAGCCAGCAT TCTTGGCTTT GCTTCCTTTT CTTAGTTTCT GTGATGAAGC TAATGGTCTG ATTCATGTGT GTTCCTAATC TGATTGATGC AACAGGGTGC AAGCCAAGGG ACAAGCAAGA AGTTTACGCC GTTCGGCGGT GGCCCCCGGC TCTGCCCTGG ATCAGAGCTT GCAAAAGTAG AGGCTGCTTT CTTCCTCCAT CACCTTGTGC TCAATTATAG GTAAAACAAA AGGGTATATT TGTCCTACCC GAGTAGAAGA TGCATGGATC AAAGTTGACT GGCTTAAACA GCAATGAACA AAATACGTTC AGAAGTAATA TTTAAGAAGC TGGTGCAGAG TAGTTGGTGT TTAAATAGGC CATAGAAAAC TGTTGAGGCA AACATGAACA GGAAAACATA CTGATGCAGT TACCACTCTC ATACTGATAA TACACACTAC ACTAGACCAC TAGTAAGTAA TGGCAAGAAG GCCATGACAG CAACTAGGCA AATTATTTAT GCTTTTGTCT GTAAGGACCG CAAGTCTGAA CTCAGCTATC TTGTGCATTT TCATAAGTGG CACTGTAGAG CATAGAATCA GACGACAACA CACAGAACAA ACATGACAGC ATGGAGTTTT CGATAGGTAG GCTATGCAAG TTGAGTTGAG GGCTGCCATA CAAGATAAAA TATACTACCA CGATATGATC AAACTCTTTT TTTTAAAAAA AAAACTAGGT TCATTAGCAA CAATCTATAC GTGACAACTG ACAAGAACAG GCAGATTTAT GTAAATTATG CGGTTGTTTC AGAGTAGAGT CTACATGTAC TTACTGAATA TCCATGCCAG AGAAAGGCTG ATCATCGTTC TTCGTTTCTT TCGTTTCTTG AAAACCTGTG CAGATGGAGA ATCGATGGCG ATGACATTCC GATGGCATAC CCGTACGTGG AGTTCCAGAG AGGTCTGCCC ATAGAAATCG AGCCACTTTG CTCTGAATCC TGACAGGTTT GCAGTTGCAG CCACGGTGAG CGAGTTCATC AAATCATCCC CGCAAGCGAG GGGGAGATGC GGGCGAGAAC GACGGACTGA GAGGATTAGT CAGTGAAACA AAAAAAAGGA GAGAAAATAT TTCAAGAACT GAAGAATGCA CTGAGCATTA GCTAGTAGTA CCTATCAATG AGCCAAGCTG AGATTGTAAT TTGCTGTACA TGGTGTAGAT ATATTTTGTC CATGCCGATT GCTTGCGGTG GTGGTGGTGC GGTGCTTCAC CCTGTAACAT CCTCCACTGT TTCAACTTTC ATCTGCTATT CTATAGAAGA AAAAAAAAAG AAGAAAATTG GGCTATTGGG CTATTG
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