Locus
Os04g0469800
Description
Similar to OSIGBa0124N08.3 protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
D11
CGSNL Gene Name
DWARF SHINKANEAIKOKU OR NOHRIN 28
Oryzabase Gene Symbol Synonym(s)
d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
Oryzabase Gene Name Synonym(s)
shinkaneaikoku or nohrin 28 dwarf, DWARF SHINKANEAIKOKU OR NOHRIN 28, OsDWARF11, dwarf-11, Cytochrome P450 724B1, Dwarf protein 11, cytochrome P450 CYP724B1, DWARF11, grain number and size on chromosome 4, Panicle Morphology Mutant 1, Notched Belly Grain 4, CLUSTERED PRIMARY BRANCH 1
Transcript Evidence
AK101419 (DDBJ, Best hit)
Protein Evidence
Q01JN4 (UniProt)
Literature
Note
Manual Curation
Gene Ontology (GO)
Biological Process: iron ion transport (GO:0006826)
Biological Process: cellular iron ion homeostasis (GO:0006879)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: ferric iron binding (GO:0008199)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
Functional domain (InterPro)
Cytochrome P450 (IPR001128)
Bacterioferritin (IPR002024)
Full-length cDNA
J033038A11 (Online Clone Ordering)
Expression Databases
TENOR (Os04t0469800-02)
RiceXPro (AK101419)
Others
Oryzabase (608)
Transcript |
2275 bp |
>Os04t0469800-02 Similar to OSIGBa0124N08.3 protein. GAGAAAAATAGAGGGAGGGAGAGGGAGAGAAGCAGAGTGTTGAGCACAAGCTAGTGAAAG GGTTAGATAGAAACTTGGTAGAATAGACAGATAGGCAGAGAGAGAGAGAGAGCTTAGCAA GCTAAGGCTTAGCTGCTGCAAGGCTCCATCCATGCTTCTTGTTGTGAGATGAGATTGAGA TAAGATGAGCAGGGGGTGGTGGTGCCTGGTGTGAGGCTATAGGTAAGATGGTGGGAGGAG AGCTTGTGCTGGCTGCTCTGGTGATCCTGCTTGCTTTGCTGCTGACCCTGGTGCTGAGCC ACTTCCTGCCTTTGCTCCTGAATCCCAAGGCTCCCAAGGGAAGCTTTGGGTGGCCTCTCC TTGGTGAGACGCTGAGGTTCCTCAGTCCTCATGCTAGCAACACCCTGGGCAGCTTCCTGG AGGATCACTGCTCCAGGTATGGGAGGGTGTTTAAGTCCCATCTGTTCTGCACCCCCACCA TAGTGTCCTGTGACCAGGAGCTGAACCACTTCATCCTTCAGAATGAGGAGAGGCTGTTTC AGTGCAGCTACCCCAGGCCAATTCATGGCATTCTGGGCAAGTCCTCCATGTTAGTGGTCC TAGGGGAGGACCACAAGAGGCTCAGGAACCTTGCTCTAGCACTGGTCACCTCCACAAAGC TCAAGCCCAGCTACCTTGGCGACATTGAGAAGATTGCACTGCATATAGTTGGGTCATGGC ATGGCAAGAGCAAGGACAAGGGGATGGTCAATGTCATCGCCTTCTGCGAGGAGGCAAGAA AGTTTGCATTCAGTGTAATAGTGAAGCAGGTGCTGGGGCTATCACCAGAGGAGCCGGTCA CTGCCATGATACTTGAAGATTTCCTCGCCTTCATGAAGGGTCTCATCTCTTTCCCTCTCT ACATCCCAGGGACGCCCTATGCCAAAGCTGTGCAGGCCAGAGCGAGGATATCAAGCACTG TGAAGGGTATTATTGAGGAGAGGAGGAATGCTGGCTCCAGCAACAAGGGTGATTTCCTTG ATGTGCTGCTTTCAAGCAATGAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATT CCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTG GGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGA AAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATG TAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTT CCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCA GAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAA AGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTT CTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAG GCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAAAGATGTCAGA TACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCAT TTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCA AGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGA TCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGA TGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGT CTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCAC GGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACG GACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAG AATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGC TGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTG CTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAG
CDS |
1041 bp |
>Os04t0469800-02 Similar to OSIGBa0124N08.3 protein. ATGGTGGGAGGAGAGCTTGTGCTGGCTGCTCTGGTGATCCTGCTTGCTTTGCTGCTGACC CTGGTGCTGAGCCACTTCCTGCCTTTGCTCCTGAATCCCAAGGCTCCCAAGGGAAGCTTT GGGTGGCCTCTCCTTGGTGAGACGCTGAGGTTCCTCAGTCCTCATGCTAGCAACACCCTG GGCAGCTTCCTGGAGGATCACTGCTCCAGGTATGGGAGGGTGTTTAAGTCCCATCTGTTC TGCACCCCCACCATAGTGTCCTGTGACCAGGAGCTGAACCACTTCATCCTTCAGAATGAG GAGAGGCTGTTTCAGTGCAGCTACCCCAGGCCAATTCATGGCATTCTGGGCAAGTCCTCC ATGTTAGTGGTCCTAGGGGAGGACCACAAGAGGCTCAGGAACCTTGCTCTAGCACTGGTC ACCTCCACAAAGCTCAAGCCCAGCTACCTTGGCGACATTGAGAAGATTGCACTGCATATA GTTGGGTCATGGCATGGCAAGAGCAAGGACAAGGGGATGGTCAATGTCATCGCCTTCTGC GAGGAGGCAAGAAAGTTTGCATTCAGTGTAATAGTGAAGCAGGTGCTGGGGCTATCACCA GAGGAGCCGGTCACTGCCATGATACTTGAAGATTTCCTCGCCTTCATGAAGGGTCTCATC TCTTTCCCTCTCTACATCCCAGGGACGCCCTATGCCAAAGCTGTGCAGGCCAGAGCGAGG ATATCAAGCACTGTGAAGGGTATTATTGAGGAGAGGAGGAATGCTGGCTCCAGCAACAAG GGTGATTTCCTTGATGTGCTGCTTTCAAGCAATGAGCTCTCTGATGAGGAGAAAGTGAGC TTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTT GTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGC ATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAA TATACCCAACATGTAAGATGA
Protein |
346 aa |
>Os04t0469800-02 Similar to OSIGBa0124N08.3 protein. MVGGELVLAALVILLALLLTLVLSHFLPLLLNPKAPKGSFGWPLLGETLRFLSPHASNTL GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERLFQCSYPRPIHGILGKSS MLVVLGEDHKRLRNLALALVTSTKLKPSYLGDIEKIALHIVGSWHGKSKDKGMVNVIAFC EEARKFAFSVIVKQVLGLSPEEPVTAMILEDFLAFMKGLISFPLYIPGTPYAKAVQARAR ISSTVKGIIEERRNAGSSNKGDFLDVLLSSNELSDEEKVSFVLDSLLGGYETTSLLISMV VYFLGQSAQDLELVKREHEGIRSKKEKDEFLSSEDYKKMEYTQHVR*
5'UTR
chr04:23471365..23471591 (- strand) : 227 bp
CDS
chr04:23471156..23471364 (- strand) : 209 bp
chr04:23470453..23470798 (- strand) : 346 bp
chr04:23470069..23470223 (- strand) : 155 bp
chr04:23469715..23469949 (- strand) : 235 bp
chr04:23469517..23469612 (- strand) : 96 bp
3'UTR
chr04:23469158..23469516 (- strand) : 359 bp
chr04:23468865..23468971 (- strand) : 107 bp
chr04:23468283..23468407 (- strand) : 125 bp
chr04:23467204..23467619 (- strand) : 416 bp
FASTA
>Os04t0469800-02 class=Sequence position=chr04:23467204..23471591 (- strand) GAGAAAAATA GAGGGAGGGA GAGGGAGAGA AGCAGAGTGT TGAGCACAAG CTAGTGAAAG GGTTAGATAG AAACTTGGTA GAATAGACAG ATAGGCAGAG AGAGAGAGAG AGCTTAGCAA GCTAAGGCTT AGCTGCTGCA AGGCTCCATC CATGCTTCTT GTTGTGAGAT GAGATTGAGA TAAGATGAGC AGGGGGTGGT GGTGCCTGGT GTGAGGCTAT AGGTAAGATG GTGGGAGGAG AGCTTGTGCT GGCTGCTCTG GTGATCCTGC TTGCTTTGCT GCTGACCCTG GTGCTGAGCC ACTTCCTGCC TTTGCTCCTG AATCCCAAGG CTCCCAAGGG AAGCTTTGGG TGGCCTCTCC TTGGTGAGAC GCTGAGGTTC CTCAGTCCTC ATGCTAGCAA CACCCTGGGC AGCTTCCTGG AGGATCACTG CTCCAGGTAA ATTAAAATCA TATGCAGTAA ACATTTCTAT CAGTATCACC ACCACAACCA CACAGGAGCA ACAAGTGTCA TCTTACCATG CAATTAAGTA CTGTACCATT ATTTCATGTG ACAGCACAAG GTAATGCTGC TGTCCTGTCC CAGCAGCTTT ATCACGCCCT TTTTTTTCCT CCCTGATGAG GGGGGTGCTG TAACATGAAT TGGACAGTGT TTAGCATCTT GTTAAAGAGT TGTGCAAACC TTTTCTTCCG ATGAACAAGC GAGAGAAAAG GAATGTAAAG GTTGCACAAC ACTTAACTAG CTAGCATGCA TGGTGGTAGT AACACTGATG ATGGTGTGAT GATGATGATG CAGGTATGGG AGGGTGTTTA AGTCCCATCT GTTCTGCACC CCCACCATAG TGTCCTGTGA CCAGGAGCTG AACCACTTCA TCCTTCAGAA TGAGGAGAGG CTGTTTCAGT GCAGCTACCC CAGGCCAATT CATGGCATTC TGGGCAAGTC CTCCATGTTA GTGGTCCTAG GGGAGGACCA CAAGAGGCTC AGGAACCTTG CTCTAGCACT GGTCACCTCC ACAAAGCTCA AGCCCAGCTA CCTTGGCGAC ATTGAGAAGA TTGCACTGCA TATAGTTGGG TCATGGCATG GCAAGAGCAA GGACAAGGGG ATGGTCAATG TCATCGCCTT CTGCGAGGAG GCAAGAAAGG TTAGCAAGTG TACTAACTTG AAACCAGAGC CATATCACCA CAAGGACATG ATCCCTTGAA ACAAGGGAGG GAAAACTTTG CACATGTTAG CTACATACCA TCATCATCAT GTTGTTACTT GCTGCTGCAT GAATCTTTGT CCCAAGGTCA CTTTGACTTA CCATGGTCTT TTTTACCTTT TCTTTTTTTT TCTCTCTCTG GTGTGCTCTC TTTCCTTGAG AACCACAGTT TGCATTCAGT GTAATAGTGA AGCAGGTGCT GGGGCTATCA CCAGAGGAGC CGGTCACTGC CATGATACTT GAAGATTTCC TCGCCTTCAT GAAGGGTCTC ATCTCTTTCC CTCTCTACAT CCCAGGGACG CCCTATGCCA AAGCTGTGCA GGCATGCAAC TCAACATCTC ATTTACACAA GTCGTTAAAC TGTCAATAAA ATTTTCAGGC CATTTTATTT TTGTATACTT ACCATAATAA CTTCATCCTT TTGTCCGCGA ATCCTCACAG GCCAGAGCGA GGATATCAAG CACTGTGAAG GGTATTATTG AGGAGAGGAG GAATGCTGGC TCCAGCAACA AGGGTGATTT CCTTGATGTG CTGCTTTCAA GCAATGAGCT CTCTGATGAG GAGAAAGTGA GCTTTGTGCT GGATTCCTTA CTGGGAGGAT ATGAGACCAC CTCACTCTTG ATCTCCATGG TTGTGTATTT CCTTGGGCAG TCAGCTCAAG ATCTGGAACT AGTGAAGGTA TACAGACTTC TCATGCTGAA AAAGACAGAG CAGTACTGGT AAATAAGTAC TTAATTAAGT GGCCATCAAT AAAATATATA TTAACATGTT TGCATGCAGA GGGAGCATGA AGGCATAAGA TCGAAGAAAG AGAAGGACGA GTTCTTGAGC TCTGAAGACT ATAAGAAGAT GGAATATACC CAACATGTAA GATGATCGTT CAATACATGC TTTAGGATTA GTTAGTAAGC CAGGGGTACC TTTTTTTCCT ATTATCAGCA ACTACACAAA TATGTGACCC TCCGAATATG AGGTTTACTC ATATTCAGAA CGATTCTCCT ATGCCTACCC ATATATGCAA TTTTTGAATT AAGCAAAAAA AAGAAAAAGA AACAGAGAGA GAAAGAATCT CATTACAATA GAGTGAAAAG GGCGGAAGGG ACATGTTCTT CAATAATGGA AACTGTATGA TGATGCATAT GCTATGCCCT TACAGGTTAT CAATGAGGCA CTGAGATGTG GCAACATTGT CAAGTTTGTC CACAGGAAGG CTCTCAAAGA TGTCAGATAC AAAGGTAATT AACCCTACTT GAGGCTTTCC TTGAAGATTC CATTGTGCTC ATCACATGAT AATGGATCAG GCAAAGTGGA TGGTTGCACC TTTATTACTG ATTTTTAAGC ATTGTTATTC CTAAAATACC TCAGCTTTTC ATAGAAGATG CTCAAAAGCA AGTGGCTCTT TTTTCTTTGC TCTGTTGCAG AGTATCTGAT TCCTTCTGGT TGGAAGGTCC TACCTGTTTT CAGTGCTGTT CATTTGAACC CCTTACTTCA TGGAAATGCC CAACAATTTC AGCCCTGCAG ATGGGAGGTA CGTTTGTTTC CATAATCTGT GAATGCTCCG CAATACTTAC TAAATGTTTA TTGTTAATGA CCTAATGAAA AATGTTTTGG ACCAGCTAGG CCACGAAGCT TAGCTTTCAC GTAGTATACT TTTCTATAAT ACAAATTTAT AAAATGAAAA GTTCAGAGCA CCTATCAAGA GAGCTTATCT GGAGCCTTGA AAGAATCTTC TTTAAAGGGT GTTCTCTAAC TAATTGCTAC CTTTAATTAG TGAGCGCCCA ACTATGACAT AATTACTCGC AACTATTCTG GTGTCTTCAG ATGCCAAACA AGCTCCCTGT GGCTGCAATG CCTTTTGTGC ATGGTCCTAA CCATGATTCC TCTCATTCAA AGCCAGCATT CTTGGCTTTG CTTCCTTTTC TTAGTTTCTG TGATGAAGCT AATGGTCTGA TTCATGTGTG TTCCTAATCT GATTGATGCA ACAGGGTGCA AGCCAAGGGA CAAGCAAGAA GTTTACGCCG TTCGGCGGTG GCCCCCGGCT CTGCCCTGGA TCAGAGCTTG CAAAAGTAGA GGCTGCTTTC TTCCTCCATC ACCTTGTGCT CAATTATAGG TAAAACAAAA GGGTATATTT GTCCTACCCG AGTAGAAGAT GCATGGATCA AAGTTGACTG GCTTAAACAG CAATGAACAA AATACGTTCA GAAGTAATAT TTAAGAAGCT GGTGCAGAGT AGTTGGTGTT TAAATAGGCC ATAGAAAACT GTTGAGGCAA ACATGAACAG GAAAACATAC TGATGCAGTT ACCACTCTCA TACTGATAAT ACACACTACA CTAGACCACT AGTAAGTAAT GGCAAGAAGG CCATGACAGC AACTAGGCAA ATTATTTATG CTTTTGTCTG TAAGGACCGC AAGTCTGAAC TCAGCTATCT TGTGCATTTT CATAAGTGGC ACTGTAGAGC ATAGAATCAG ACGACAACAC ACAGAACAAA CATGACAGCA TGGAGTTTTC GATAGGTAGG CTATGCAAGT TGAGTTGAGG GCTGCCATAC AAGATAAAAT ATACTACCAC GATATGATCA AACTCTTTTT TTTAAAAAAA AAACTAGGTT CATTAGCAAC AATCTATACG TGACAACTGA CAAGAACAGG CAGATTTATG TAAATTATGC GGTTGTTTCA GAGTAGAGTC TACATGTACT TACTGAATAT CCATGCCAGA GAAAGGCTGA TCATCGTTCT TCGTTTCTTT CGTTTCTTGA AAACCTGTGC AGATGGAGAA TCGATGGCGA TGACATTCCG ATGGCATACC CGTACGTGGA GTTCCAGAGA GGTCTGCCCA TAGAAATCGA GCCACTTTGC TCTGAATCCT GACAGGTTTG CAGTTGCAGC CACGGTGAGC GAGTTCATCA AATCATCCCC GCAAGCGAGG GGGAGATGCG GGCGAGAACG ACGGACTGAG AGGATTAGTC AGTGAAACAA AAAAAAGGAG AGAAAATATT TCAAGAACTG AAGAATGCAC TGAGCATTAG CTAGTAGTAC CTATCAATGA GCCAAGCTGA GATTGTAATT TGCTGTACAT GGTGTAGATA TATTTTGTCC ATGCCGATTG CTTGCGGTGG TGGTGGTGCG GTGCTTCACC CTGTAACATC CTCCACTGTT TCAACTTTCA TCTGCTATTC TATAGAAG
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