Os04t0649100-01

Locus

Os04g0649100

Description

Similar to cDNA clone:J023121E19, full insert sequence.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

SHAT1

CGSNL Gene Name

SHATTERING ABORTION 1

Oryzabase Gene Symbol Synonym(s)

SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124

Oryzabase Gene Name Synonym(s)

SHATTERING ABORTION1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43, APETALA2-5, DLN repressor 124, DLN motif protein 124

Transcript Evidence

AK099991 (DDBJ, Best hit)

Protein Evidence

B7F740 (UniProt)

Literature

Note

  • CDS sequences are different between Build 5 and IRGSP-1.0.

Manual Curation

Full-length cDNA

J013131A17 (Online Clone Ordering)

Expression Databases

TENOR (Os04t0649100-01)

Others

Oryzabase (10404)

Transcript

2648 bp

>Os04t0649100-01 Similar to cDNA clone:J023121E19, full insert sequence.
ACTACGTTCTCTCCATTCCATCTCCCCCCAATCGCTCGGGCGCAATGCGCAGCAGCAGCA
GCAAGGCCACACCCACAACCTCCCCTGCTTTTCGCGTCCTCTGCTCTCCTCCTAGGTTAG
CAGCGGCTTTGCCAACGAGATAGATAGGCAAAAGAGAAAGTACTTGCATAGCCCAACAAG
GCAACAGCTGCTGCTACCCTCTCTTTCTTTTCTCTGCTTCTCCTTGCTCTCTCTTCTCTT
CCTTTCTTTCTTTCTATCTCCTGCTCGTTCTTTCCATTTTCGAGAGCTCAACGGAGGAAG
AAGGAGAGAGAGAGAGGCAAAGGGGAGCAAAAGAAGAGCAGCATGGACGGGTTTGGTATT
GGATTCGTCTTGTTTTGGGCATTTCTTGCTTCTGCTCCTTTTACCTTTCATAGCAACATC
TTATCAAGTTATTCTTGCCATACTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCT
CTTCTCTCATCACTCACCATCTTCTTGTCTTCTCTCTCTCCTCTCATCCTTTTGTGCAAT
GCAGGGATTGTGGCAAGCAGGTCTATTTGGGTAAGTTTCATTCATGTCCATCTTGTCCAT
ACCCCCCATACTTGGGAACTGCTACAAGCGGCCTCCACGATTGGCTCGCCAATTGGAGCC
GTTTTTTCTCTATGGGCGCGGTTTCGATTCCTCACAATGGCTGCCTTTGTGACGACTGAA
TTTGCAGGCGGATTTGACACTGCTCATGCGGCGGCTCGGTAAGTTGGACTCAATTCCTCG
TCTTCCAATCGCTGACTTCTATTCCCTGCTCGCCCAATCGAATCCGGCGCTGTCAAAATT
CTAATCTTTTTTGTTATGTTCATTTCCCAATCGCAGGGCGTACGATCGGGCGGCGATCAA
GTTCCGCGGCGTGGAGGCCGACATCAATTTCAGCTTGGAGGATTACGAGGATGACCTGAA
GCAGGTGAGAGCGCGATCGATTATTATTACCTGAACTTTCCTTTCTTTTCATGAGTCGCC
ACGGTTTCGTTAGATCATACTACTATTACTGTAGCTGCAAGATTAACGGGATCATTGCAG
ATGAGCAACCTGACCAAGGAGGAGTTCGTCCACGTGCTCCGGCGGCAGAGCACGGGGTTC
CCCCGGGGAAGCTCCAAGTACAGGGGCGTGACGCTCCACAAGTGCGGGAGATGGGAGGCT
CGGATGGGCCAATTCCTCGGCAAGAAGTATGTCCTAATCGATCACCGTTTCTTCCTCTTT
CGTTCGATCGTTCGTTCTTGGGCAATCTCCCGTAAATCATCTTGTGGGTTTTTGGTGCAC
TGCAGGTACGTCTACTTGGGGCTGTTCGACACCGAGGAGGAAGCTGCCAGGTAAAATTAT
TGGGCCGCACTGTGCGCGCGCGCGGCCATTGTTGTTGAATGTCGAGTGTGGCTGCTGCGC
CGTTTGCGAGTTTACGCTTCTGGGTTAGATGGGCGAGCGGTGATGGTGATTGATGTTTCT
TGTCTCTTGGCCACAGGGCGTACGACCGCGCTGCCATCAAGTGCAATGGCAAGGATGCGG
TGACGAACTTCGATCCAAGCATTTACGCCGGGGAGTTCGAGCCGCCGGGTGGGTGTGTCA
TGTGTGCGCTTACTGCTCATGGCTAGGCTGTTCGTTTGTGAGTTGTGACTGCTCATCCGG
ACAAAATCTGTCACTGTTTTGCAGCAGCGGCCACGGGTGATGCCGCCGAGCACAACCTGG
ACCTCTCGCTTGGGAGCTCGGCGGGCTCCAAGAGGGGCAACGTTGACGGTGGCGGGGACG
ACGAGATCACCGGCGGCGGTGGCGGTGGCGCGGGCTCCGACCAGCGCGTCCCTATGGCGT
TCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGGTAAAAAAAGAAT
GGGGACTTTGCTTTCCGCATCAGCCGATTGTCTTCTCATCACGTAATAAAAAGGCTTAAA
AATTCCTCGTTTTCTTGTCTAGTTCGACCAGAACTCGAACCATCCCCAGATGCCTCCGGT
CCTGCAGGTCACCCACCTGCCATTCAGTCCCAGGCATCATCACCAAGTGGGTAGCTCACT
ATACAACTCCACTCCACTTCGCTCCATTTGCTGCTGAATTTCTCGCGTTTGGTTTCACCG
GTATCCGTGAGCTGATGAATTCTTGATGTCTGTGCTGCTAGTTCTTGAGCAATGGTGATC
CGGGGACAGCGGGAGGCCTGTCACTGACGATCGGCGCAGGCATGGCCGGGCACTGGCCTC
CCCAGCAGCAGCAGGGGTGGGGCAACGCCGGCGGCATGAGCTGGCCGCACCCGCCGCACC
CGCCGCCGCCGCCGACCAACGCCGCGGCCGCCGCAACCGCTACAGCAGCTGCAGCATCAT
CACGATTCCCTCCCTACATTGCGACGCAAGCCTCAACCTGGCTGCAGAAGAACGGGTTCC
ATTCCCTGACCCGGCCCACCTAAGATGATCAAAGATTTAAAATTCAAGATCGCTGCATTC
ATCGTCTCCTCGTCGATCGATCATGGCAAAGATCGATGGAGAGAGAGAGGTGTGTGTCAC
TGACGCAGGGAAAAACTCAATGCAGATTTACCAGCAAGAACAAGAGCTGGATGCTATTCT
TTTGCTCT

CDS

282 bp

>Os04t0649100-01 Similar to cDNA clone:J023121E19, full insert sequence.
TTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTGTCACTGACGATCGGCGCAGGC
ATGGCCGGGCACTGGCCTCCCCAGCAGCAGCAGGGGTGGGGCAACGCCGGCGGCATGAGC
TGGCCGCACCCGCCGCACCCGCCGCCGCCGCCGACCAACGCCGCGGCCGCCGCAACCGCT
ACAGCAGCTGCAGCATCATCACGATTCCCTCCCTACATTGCGACGCAAGCCTCAACCTGG
CTGCAGAAGAACGGGTTCCATTCCCTGACCCGGCCCACCTAA

Protein

94 aa

>Os04t0649100-01 Similar to cDNA clone:J023121E19, full insert sequence.
FLSNGDPGTAGGLSLTIGAGMAGHWPPQQQQGWGNAGGMSWPHPPHPPPPPTNAAAAATA
TAAAASSRFPPYIATQASTWLQKNGFHSLTRPT*

5'UTR

chr04:33071622..33071878 (+ strand) : 257 bp

chr04:33072373..33074316 (+ strand) : 1944 bp

CDS

chr04:33074317..33074598 (+ strand) : 282 bp

3'UTR

chr04:33074599..33074763 (+ strand) : 165 bp

FASTA

>Os04t0649100-01 class=Sequence position=chr04:33071622..33074763 (+ strand)
ACTACGTTCT CTCCATTCCA TCTCCCCCCA ATCGCTCGGG CGCAATGCGC AGCAGCAGCA GCAAGGCCAC ACCCACAACC
TCCCCTGCTT TTCGCGTCCT CTGCTCTCCT CCTAGGTTAG CAGCGGCTTT GCCAACGAGA TAGATAGGCA AAAGAGAAAG
TACTTGCATA GCCCAACAAG GCAACAGCTG CTGCTACCCT CTCTTTCTTT TCTCTGCTTC TCCTTGCTCT CTCTTCTCTT
CCTTTCTTTC TTTCTATCTC CTGCAGTGCC AAGAGTCCAA GACCCAACAA GGGGGAGGAC GGAGGAGGCG AGGCAGAGGC
ATCTCACCGA AGGGGGAAGG GCGACGCCAT GTGGGACCTC AATGACTCGC CGGCGGCCGA GGCCGCGCCG CCGCCGCTGT
CGCCGTCCGC CGACGACTCC GGCGCCTCCT CGTCCTCGGC CGCCGCCGTC GTCGAGATAC CCGACGACGC CGACGACGAC
TCGGCCGCTG TGGTTGTCGT CACGCGCCAG TTCTTCCCTC CGGCCGTCCC GGGCGGCGGC GGCGACCCCG CCCCCGGGAA
CGCGCGCGCC GGGTGGCTCC GCCTGGCCGG AGCCGCCCCG CCGGTCGCTG CAACGGGGCC GGCGGCGTCG GCGGCGGTGT
CCAAGAAGAG CCGGCGCGGG CCGCGGTCGC GCAGCTCGCA GTACCGCGGC GTCACGTTCT ACCGCCGCAC CGGGCGATGG
GAATCGCACA TATGGTAAGC ATCCTCGTCT CCTCCTGCTC GTTCTTTCCA TTTTCGAGAG CTCAACGGAG GAAGAAGGAG
AGAGAGAGAG GCAAAGGGGA GCAAAAGAAG AGCAGCATGG ACGGGTTTGG TATTGGATTC GTCTTGTTTT GGGCATTTCT
TGCTTCTGCT CCTTTTACCT TTCATAGCAA CATCTTATCA AGTTATTCTT GCCATACTCT CTCCTCTCTC TCTCTCTCTC
TCTCTCTCTC TTCTCTTCTC TCATCACTCA CCATCTTCTT GTCTTCTCTC TCTCCTCTCA TCCTTTTGTG CAATGCAGGG
ATTGTGGCAA GCAGGTCTAT TTGGGTAAGT TTCATTCATG TCCATCTTGT CCATACCCCC CATACTTGGG AACTGCTACA
AGCGGCCTCC ACGATTGGCT CGCCAATTGG AGCCGTTTTT TCTCTATGGG CGCGGTTTCG ATTCCTCACA ATGGCTGCCT
TTGTGACGAC TGAATTTGCA GGCGGATTTG ACACTGCTCA TGCGGCGGCT CGGTAAGTTG GACTCAATTC CTCGTCTTCC
AATCGCTGAC TTCTATTCCC TGCTCGCCCA ATCGAATCCG GCGCTGTCAA AATTCTAATC TTTTTTGTTA TGTTCATTTC
CCAATCGCAG GGCGTACGAT CGGGCGGCGA TCAAGTTCCG CGGCGTGGAG GCCGACATCA ATTTCAGCTT GGAGGATTAC
GAGGATGACC TGAAGCAGGT GAGAGCGCGA TCGATTATTA TTACCTGAAC TTTCCTTTCT TTTCATGAGT CGCCACGGTT
TCGTTAGATC ATACTACTAT TACTGTAGCT GCAAGATTAA CGGGATCATT GCAGATGAGC AACCTGACCA AGGAGGAGTT
CGTCCACGTG CTCCGGCGGC AGAGCACGGG GTTCCCCCGG GGAAGCTCCA AGTACAGGGG CGTGACGCTC CACAAGTGCG
GGAGATGGGA GGCTCGGATG GGCCAATTCC TCGGCAAGAA GTATGTCCTA ATCGATCACC GTTTCTTCCT CTTTCGTTCG
ATCGTTCGTT CTTGGGCAAT CTCCCGTAAA TCATCTTGTG GGTTTTTGGT GCACTGCAGG TACGTCTACT TGGGGCTGTT
CGACACCGAG GAGGAAGCTG CCAGGTAAAA TTATTGGGCC GCACTGTGCG CGCGCGCGGC CATTGTTGTT GAATGTCGAG
TGTGGCTGCT GCGCCGTTTG CGAGTTTACG CTTCTGGGTT AGATGGGCGA GCGGTGATGG TGATTGATGT TTCTTGTCTC
TTGGCCACAG GGCGTACGAC CGCGCTGCCA TCAAGTGCAA TGGCAAGGAT GCGGTGACGA ACTTCGATCC AAGCATTTAC
GCCGGGGAGT TCGAGCCGCC GGGTGGGTGT GTCATGTGTG CGCTTACTGC TCATGGCTAG GCTGTTCGTT TGTGAGTTGT
GACTGCTCAT CCGGACAAAA TCTGTCACTG TTTTGCAGCA GCGGCCACGG GTGATGCCGC CGAGCACAAC CTGGACCTCT
CGCTTGGGAG CTCGGCGGGC TCCAAGAGGG GCAACGTTGA CGGTGGCGGG GACGACGAGA TCACCGGCGG CGGTGGCGGT
GGCGCGGGCT CCGACCAGCG CGTCCCTATG GCGTTCGACC TTGACTGGCA AACGGCGGCG GCGAGGAGCA CCAAAGCTAA
GGTAAAAAAA GAATGGGGAC TTTGCTTTCC GCATCAGCCG ATTGTCTTCT CATCACGTAA TAAAAAGGCT TAAAAATTCC
TCGTTTTCTT GTCTAGTTCG ACCAGAACTC GAACCATCCC CAGATGCCTC CGGTCCTGCA GGTCACCCAC CTGCCATTCA
GTCCCAGGCA TCATCACCAA GTGGGTAGCT CACTATACAA CTCCACTCCA CTTCGCTCCA TTTGCTGCTG AATTTCTCGC
GTTTGGTTTC ACCGGTATCC GTGAGCTGAT GAATTCTTGA TGTCTGTGCT GCTAGTTCTT GAGCAATGGT GATCCGGGGA
CAGCGGGAGG CCTGTCACTG ACGATCGGCG CAGGCATGGC CGGGCACTGG CCTCCCCAGC AGCAGCAGGG GTGGGGCAAC
GCCGGCGGCA TGAGCTGGCC GCACCCGCCG CACCCGCCGC CGCCGCCGAC CAACGCCGCG GCCGCCGCAA CCGCTACAGC
AGCTGCAGCA TCATCACGAT TCCCTCCCTA CATTGCGACG CAAGCCTCAA CCTGGCTGCA GAAGAACGGG TTCCATTCCC
TGACCCGGCC CACCTAAGAT GATCAAAGAT TTAAAATTCA AGATCGCTGC ATTCATCGTC TCCTCGTCGA TCGATCATGG
CAAAGATCGA TGGAGAGAGA GAGGTGTGTG TCACTGACGC AGGGAAAAAC TCAATGCAGA TTTACCAGCA AGAACAAGAG
CTGGATGCTA TTCTTTTGCT CT

Locus: Os04g0649100

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Locus: Os04g0649100

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