Os04t0649100-03

Locus

Os04g0649100

Description

APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development

RAP-DB Gene Symbol Synonym(s)

SHAT1, AP2/EREBP#043, AP2/EREBP43

RAP-DB Gene Name Synonym(s)

SHATTERING ABORTION 1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43

CGSNL Gene Symbol

SHAT1

CGSNL Gene Name

SHATTERING ABORTION 1

Oryzabase Gene Symbol Synonym(s)

SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124

Oryzabase Gene Name Synonym(s)

SHATTERING ABORTION1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43, APETALA2-5, DLN repressor 124, DLN motif protein 124

Transcript Evidence

FO082280 (Oryza rufipogon W1943)

Protein Evidence

Q7XT53

Literature

PMID: 22408071

Note

Manual Curation

September 10, 2014

Gene Ontology (GO)

Biological Process: regulation of transcription, DNA-templated (GO:0006355)

Molecular Function: DNA binding (GO:0003677)

Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)

Functional domain (InterPro)

DNA-binding domain (IPR016177)

AP2/ERF domain (IPR001471)

Others

Oryzabase (10404)

Transcript

1383 bp

>Os04t0649100-03 APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development
ATGTGGGACCTCAATGACTCGCCGGCGGCCGAGGCCGCGCCGCCGCCGCTGTCGCCGTCC
GCCGACGACTCCGGCGCCTCCTCGTCCTCGGCCGCCGCCGTCGTCGAGATACCCGACGAC
GCCGACGACGACTCGGCCGCTGTGGTTGTCGTCACGCGCCAGTTCTTCCCTCCGGCCGTC
CCGGGCGGCGGCGGCGACCCCGCCCCCGGGAACGCGCGCGCCGGGTGGCTCCGCCTGGCC
GGAGCCGCCCCGCCGGTCGCTGCAACGGGGCCGGCGGCGTCGGCGGCGGTGTCCAAGAAG
AGCCGGCGCGGGCCGCGGTCGCGCAGCTCGCAGTACCGCGGCGTCACGTTCTACCGCCGC
ACCGGGCGATGGGAATCGCACATATGGGATTGTGGCAAGCAGGTCTATTTGGGCGGATTT
GACACTGCTCATGCGGCGGCTCGGGCGTACGATCGGGCGGCGATCAAGTTCCGCGGCGTG
GAGGCCGACATCAATTTCAGCTTGGAGGATTACGAGGATGACCTGAAGCAGATGAGCAAC
CTGACCAAGGAGGAGTTCGTCCACGTGCTCCGGCGGCAGAGCACGGGGTTCCCCCGGGGA
AGCTCCAAGTACAGGGGCGTGACGCTCCACAAGTGCGGGAGATGGGAGGCTCGGATGGGC
CAATTCCTCGGCAAGAAGTACGTCTACTTGGGGCTGTTCGACACCGAGGAGGAAGCTGCC
AGGGCGTACGACCGCGCTGCCATCAAGTGCAATGGCAAGGATGCGGTGACGAACTTCGAT
CCAAGCATTTACGCCGGGGAGTTCGAGCCGCCGGCAGCGGCCACGGGTGATGCCGCCGAG
CACAACCTGGACCTCTCGCTTGGGAGCTCGGCGGGCTCCAAGAGGGGCAACGTTGACGGT
GGCGGGGACGACGAGATCACCGGCGGCGGTGGCGGTGGCGCGGGCTCCGACCAGCGCGTC
CCTATGGCGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGTTC
GACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACCCACCTGCCATTC
AGTCCCAGGCATCATCACCAATTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTG
TCACTGACGATCGGCGCAGGCATGGCCGGGCACTGGCCTCCCCAGCAGCAGCAGGGGTGG
GGCAACGCCGGCGGCATGAGCTGGCCGCACCCGCCGCACCCGCCGCCGCCGCCGACCAAC
GCCGCGGCCGCCGCAACCGCTACAGCAGCTGCAGCATCATCACGATTCCCTCCCTACATT
GCGACGCAAGCCTCAACCTGGCTGCAGAAGAACGGGTTCCATTCCCTGACCCGGCCCACC
TAA

CDS

1383 bp

>Os04t0649100-03 APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development
ATGTGGGACCTCAATGACTCGCCGGCGGCCGAGGCCGCGCCGCCGCCGCTGTCGCCGTCC
GCCGACGACTCCGGCGCCTCCTCGTCCTCGGCCGCCGCCGTCGTCGAGATACCCGACGAC
GCCGACGACGACTCGGCCGCTGTGGTTGTCGTCACGCGCCAGTTCTTCCCTCCGGCCGTC
CCGGGCGGCGGCGGCGACCCCGCCCCCGGGAACGCGCGCGCCGGGTGGCTCCGCCTGGCC
GGAGCCGCCCCGCCGGTCGCTGCAACGGGGCCGGCGGCGTCGGCGGCGGTGTCCAAGAAG
AGCCGGCGCGGGCCGCGGTCGCGCAGCTCGCAGTACCGCGGCGTCACGTTCTACCGCCGC
ACCGGGCGATGGGAATCGCACATATGGGATTGTGGCAAGCAGGTCTATTTGGGCGGATTT
GACACTGCTCATGCGGCGGCTCGGGCGTACGATCGGGCGGCGATCAAGTTCCGCGGCGTG
GAGGCCGACATCAATTTCAGCTTGGAGGATTACGAGGATGACCTGAAGCAGATGAGCAAC
CTGACCAAGGAGGAGTTCGTCCACGTGCTCCGGCGGCAGAGCACGGGGTTCCCCCGGGGA
AGCTCCAAGTACAGGGGCGTGACGCTCCACAAGTGCGGGAGATGGGAGGCTCGGATGGGC
CAATTCCTCGGCAAGAAGTACGTCTACTTGGGGCTGTTCGACACCGAGGAGGAAGCTGCC
AGGGCGTACGACCGCGCTGCCATCAAGTGCAATGGCAAGGATGCGGTGACGAACTTCGAT
CCAAGCATTTACGCCGGGGAGTTCGAGCCGCCGGCAGCGGCCACGGGTGATGCCGCCGAG
CACAACCTGGACCTCTCGCTTGGGAGCTCGGCGGGCTCCAAGAGGGGCAACGTTGACGGT
GGCGGGGACGACGAGATCACCGGCGGCGGTGGCGGTGGCGCGGGCTCCGACCAGCGCGTC
CCTATGGCGTTCGACCTTGACTGGCAAACGGCGGCGGCGAGGAGCACCAAAGCTAAGTTC
GACCAGAACTCGAACCATCCCCAGATGCCTCCGGTCCTGCAGGTCACCCACCTGCCATTC
AGTCCCAGGCATCATCACCAATTCTTGAGCAATGGTGATCCGGGGACAGCGGGAGGCCTG
TCACTGACGATCGGCGCAGGCATGGCCGGGCACTGGCCTCCCCAGCAGCAGCAGGGGTGG
GGCAACGCCGGCGGCATGAGCTGGCCGCACCCGCCGCACCCGCCGCCGCCGCCGACCAAC
GCCGCGGCCGCCGCAACCGCTACAGCAGCTGCAGCATCATCACGATTCCCTCCCTACATT
GCGACGCAAGCCTCAACCTGGCTGCAGAAGAACGGGTTCCATTCCCTGACCCGGCCCACC
TAA

Protein

461 aa

>Os04t0649100-03 APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development
MWDLNDSPAAEAAPPPLSPSADDSGASSSSAAAVVEIPDDADDDSAAVVVVTRQFFPPAV
PGGGGDPAPGNARAGWLRLAGAAPPVAATGPAASAAVSKKSRRGPRSRSSQYRGVTFYRR
TGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSN
LTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEEEAA
RAYDRAAIKCNGKDAVTNFDPSIYAGEFEPPAAATGDAAEHNLDLSLGSSAGSKRGNVDG
GGDDEITGGGGGGAGSDQRVPMAFDLDWQTAAARSTKAKFDQNSNHPQMPPVLQVTHLPF
SPRHHHQFLSNGDPGTAGGLSLTIGAGMAGHWPPQQQQGWGNAGGMSWPHPPHPPPPPTN
AAAAATATAAAASSRFPPYIATQASTWLQKNGFHSLTRPT*

CDS

chr04:33071970..33072355 (+ strand) : 386 bp

chr04:33072660..33072685 (+ strand) : 26 bp

chr04:33072843..33072873 (+ strand) : 31 bp

chr04:33072992..33073079 (+ strand) : 88 bp

chr04:33073196..33073341 (+ strand) : 146 bp

chr04:33073441..33073485 (+ strand) : 45 bp

chr04:33073632..33073723 (+ strand) : 92 bp

chr04:33073820..33074022 (+ strand) : 203 bp

chr04:33074118..33074201 (+ strand) : 84 bp

chr04:33074317..33074598 (+ strand) : 282 bp

FASTA

>Os04t0649100-03 class=Sequence position=chr04:33071970..33074598 (+ strand)
ATGTGGGACC TCAATGACTC GCCGGCGGCC GAGGCCGCGC CGCCGCCGCT GTCGCCGTCC GCCGACGACT CCGGCGCCTC
CTCGTCCTCG GCCGCCGCCG TCGTCGAGAT ACCCGACGAC GCCGACGACG ACTCGGCCGC TGTGGTTGTC GTCACGCGCC
AGTTCTTCCC TCCGGCCGTC CCGGGCGGCG GCGGCGACCC CGCCCCCGGG AACGCGCGCG CCGGGTGGCT CCGCCTGGCC
GGAGCCGCCC CGCCGGTCGC TGCAACGGGG CCGGCGGCGT CGGCGGCGGT GTCCAAGAAG AGCCGGCGCG GGCCGCGGTC
GCGCAGCTCG CAGTACCGCG GCGTCACGTT CTACCGCCGC ACCGGGCGAT GGGAATCGCA CATATGGTAA GCATCCTCGT
CTCCTCCTGC TCGTTCTTTC CATTTTCGAG AGCTCAACGG AGGAAGAAGG AGAGAGAGAG AGGCAAAGGG GAGCAAAAGA
AGAGCAGCAT GGACGGGTTT GGTATTGGAT TCGTCTTGTT TTGGGCATTT CTTGCTTCTG CTCCTTTTAC CTTTCATAGC
AACATCTTAT CAAGTTATTC TTGCCATACT CTCTCCTCTC TCTCTCTCTC TCTCTCTCTC TCTTCTCTTC TCTCATCACT
CACCATCTTC TTGTCTTCTC TCTCTCCTCT CATCCTTTTG TGCAATGCAG GGATTGTGGC AAGCAGGTCT ATTTGGGTAA
GTTTCATTCA TGTCCATCTT GTCCATACCC CCCATACTTG GGAACTGCTA CAAGCGGCCT CCACGATTGG CTCGCCAATT
GGAGCCGTTT TTTCTCTATG GGCGCGGTTT CGATTCCTCA CAATGGCTGC CTTTGTGACG ACTGAATTTG CAGGCGGATT
TGACACTGCT CATGCGGCGG CTCGGTAAGT TGGACTCAAT TCCTCGTCTT CCAATCGCTG ACTTCTATTC CCTGCTCGCC
CAATCGAATC CGGCGCTGTC AAAATTCTAA TCTTTTTTGT TATGTTCATT TCCCAATCGC AGGGCGTACG ATCGGGCGGC
GATCAAGTTC CGCGGCGTGG AGGCCGACAT CAATTTCAGC TTGGAGGATT ACGAGGATGA CCTGAAGCAG GTGAGAGCGC
GATCGATTAT TATTACCTGA ACTTTCCTTT CTTTTCATGA GTCGCCACGG TTTCGTTAGA TCATACTACT ATTACTGTAG
CTGCAAGATT AACGGGATCA TTGCAGATGA GCAACCTGAC CAAGGAGGAG TTCGTCCACG TGCTCCGGCG GCAGAGCACG
GGGTTCCCCC GGGGAAGCTC CAAGTACAGG GGCGTGACGC TCCACAAGTG CGGGAGATGG GAGGCTCGGA TGGGCCAATT
CCTCGGCAAG AAGTATGTCC TAATCGATCA CCGTTTCTTC CTCTTTCGTT CGATCGTTCG TTCTTGGGCA ATCTCCCGTA
AATCATCTTG TGGGTTTTTG GTGCACTGCA GGTACGTCTA CTTGGGGCTG TTCGACACCG AGGAGGAAGC TGCCAGGTAA
AATTATTGGG CCGCACTGTG CGCGCGCGCG GCCATTGTTG TTGAATGTCG AGTGTGGCTG CTGCGCCGTT TGCGAGTTTA
CGCTTCTGGG TTAGATGGGC GAGCGGTGAT GGTGATTGAT GTTTCTTGTC TCTTGGCCAC AGGGCGTACG ACCGCGCTGC
CATCAAGTGC AATGGCAAGG ATGCGGTGAC GAACTTCGAT CCAAGCATTT ACGCCGGGGA GTTCGAGCCG CCGGGTGGGT
GTGTCATGTG TGCGCTTACT GCTCATGGCT AGGCTGTTCG TTTGTGAGTT GTGACTGCTC ATCCGGACAA AATCTGTCAC
TGTTTTGCAG CAGCGGCCAC GGGTGATGCC GCCGAGCACA ACCTGGACCT CTCGCTTGGG AGCTCGGCGG GCTCCAAGAG
GGGCAACGTT GACGGTGGCG GGGACGACGA GATCACCGGC GGCGGTGGCG GTGGCGCGGG CTCCGACCAG CGCGTCCCTA
TGGCGTTCGA CCTTGACTGG CAAACGGCGG CGGCGAGGAG CACCAAAGCT AAGGTAAAAA AAGAATGGGG ACTTTGCTTT
CCGCATCAGC CGATTGTCTT CTCATCACGT AATAAAAAGG CTTAAAAATT CCTCGTTTTC TTGTCTAGTT CGACCAGAAC
TCGAACCATC CCCAGATGCC TCCGGTCCTG CAGGTCACCC ACCTGCCATT CAGTCCCAGG CATCATCACC AAGTGGGTAG
CTCACTATAC AACTCCACTC CACTTCGCTC CATTTGCTGC TGAATTTCTC GCGTTTGGTT TCACCGGTAT CCGTGAGCTG
ATGAATTCTT GATGTCTGTG CTGCTAGTTC TTGAGCAATG GTGATCCGGG GACAGCGGGA GGCCTGTCAC TGACGATCGG
CGCAGGCATG GCCGGGCACT GGCCTCCCCA GCAGCAGCAG GGGTGGGGCA ACGCCGGCGG CATGAGCTGG CCGCACCCGC
CGCACCCGCC GCCGCCGCCG ACCAACGCCG CGGCCGCCGC AACCGCTACA GCAGCTGCAG CATCATCACG ATTCCCTCCC
TACATTGCGA CGCAAGCCTC AACCTGGCTG CAGAAGAACG GGTTCCATTC CCTGACCCGG CCCACCTAA

Locus: Os04g0649100

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Locus: Os04g0649100

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