Locus
Os05g0187500
Description
IQ calmodulin-binding motif family protein, Positive regulator of brassinosteroid signalling, Regulation of grain width and weight
RAP-DB Gene Symbol Synonym(s)
GW5, qSW5/GW5, GSE5
RAP-DB Gene Name Synonym(s)
GRAIN WIDTH 5
CGSNL Gene Symbol
GW5
CGSNL Gene Name
GRAIN WIDTH 5
Oryzabase Gene Symbol Synonym(s)
qSW5/GW5, GSE5
Oryzabase Gene Name Synonym(s)
GRAIN SIZE ON CHROMOSOME 5
Transcript Evidence
Protein Evidence
Literature
PMID: 28394310
PMID: 28366824
Note
Manual Curation
December 14, 2017
Gene Ontology (GO)
Molecular Function: protein binding (GO:0005515)
Functional domain (InterPro)
Domain of unknown function DUF4005 (IPR025064)
IQ motif, EF-hand binding site (IPR000048)
Expression Databases
TENOR (Os05t0187500-00)
Others
Oryzabase (15162)
KEGG (Os05t0187500-00)
Transcript |
1413 bp |
>Os05t0187500-01 IQ calmodulin-binding motif family protein, Positive regulator of brassinosteroid signalling, Regulation of grain width and weight ATGggcaaggcggcgcggtggttccgcaacatgtggggaggagggaggaaggagcagaag ggcgaggcgccggcgagtggggggaagaggtggagcttcgggaagtcgtcgagggactcg gcggaggccgcggcggctgctgctgcggcggcggcggaggcttccgggggcaatgcggcg atcgccagggcggccgaggcggcgtggctcaggtcggtgtacgccgacacggagcgggaG CAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGCGGCGGCGGCTGATGCCGCCGTG GCGGCCGCTCAGGCCGCCGTCGCCGTCGTGCGGCTTACTAGCAAGGGCCGCTCGGCTCCC GTCCTCGCCGCCACCGTCGCCGGCGACACGCGCAGCCTTGCCGCCGCCGCCGTCAGAATC CAGACGGCATTCAGAGGCTTCCTGGCGAAGAAGGCGCTGCGAGCGCTCAAGGCGCTGGTG AAGCTGCAGGCGCTGGTGCGCGGCTACCTCGTTCGCCGGCAGGCCGCCGCCACGCTGCAG AGCATGCAGGCGCTCGTCCGCGCCCAGGCCACTGTCCGCGCCCACCGCAGTGGCGCCGGC GCCGCCGCCAATCTCCCGCACCTCCACCACGCTCCCTTCTGGCCCCGCCGCTCGCTGCAG GAGAGGTGCGCCGGCGACGACACGAGGAGCGAGCACGGTGTGGCGGCGTACAGCCGGCGG CTGTCGGCGAGCATCGAGTCGTCGTCGTACGGGTACGACCGGAGCCCCAAGATCGTGGAG GTGGACACCGGGAGGCCCAAGTCGCGGTCGTCGTCGTCGCGGCGGGCGAGCTCCCCGCTG CTGCTCGACGCCGCTGGGTGCGCGAGCGGCGGCGAGGACTGGTGCGCCAACTCCATGTCG TCGCCGCTCCCGTGCTACCTCCCCGGCGGCGCGCCGCCGCCCCGCATCGCCGTCCCGACG TCGCGCCACTTCCCCGACTACGACTGGTGCGCGCTGGAGAAGGCCCGGCCGGCGACGGCG CAGAGCACGCCGCGGTACGCGCACGCGCCGCCGACGCCGACCAAGAGCGTGTGCGGCGGC GGCGGCGGCGGCGGCATCCACTCGTCGCCGCTCAACTGCCCGAACTACATGTCCAACACG CAGTCGTTCGAGGCGAAGGTGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGACCGGC GGCGCCGGCGCCGGCGGCGGCCGGAAGCGGGTGCCGCTGAGCGAGGTGGTGGTGGTGGAG TCCAGGGCGAGCTTGAGCGGCGTGGGCATGCAGCGCTCGTGCAACCGGGTGCAGGAGGCG TTCAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCTCGTCGGAGTCCGGCGAGAAC GACCGCCACGCGTTCTTGCAGAGGAGGTGGTGA
CDS |
1413 bp |
>Os05t0187500-01 IQ calmodulin-binding motif family protein, Positive regulator of brassinosteroid signalling, Regulation of grain width and weight ATGggcaaggcggcgcggtggttccgcaacatgtggggaggagggaggaaggagcagaag ggcgaggcgccggcgagtggggggaagaggtggagcttcgggaagtcgtcgagggactcg gcggaggccgcggcggctgctgctgcggcggcggcggaggcttccgggggcaatgcggcg atcgccagggcggccgaggcggcgtggctcaggtcggtgtacgccgacacggagcgggaG CAGAGCAAGCACGCCATCGCCGTCGCCGCGGCCACCGCGGCGGCGGCTGATGCCGCCGTG GCGGCCGCTCAGGCCGCCGTCGCCGTCGTGCGGCTTACTAGCAAGGGCCGCTCGGCTCCC GTCCTCGCCGCCACCGTCGCCGGCGACACGCGCAGCCTTGCCGCCGCCGCCGTCAGAATC CAGACGGCATTCAGAGGCTTCCTGGCGAAGAAGGCGCTGCGAGCGCTCAAGGCGCTGGTG AAGCTGCAGGCGCTGGTGCGCGGCTACCTCGTTCGCCGGCAGGCCGCCGCCACGCTGCAG AGCATGCAGGCGCTCGTCCGCGCCCAGGCCACTGTCCGCGCCCACCGCAGTGGCGCCGGC GCCGCCGCCAATCTCCCGCACCTCCACCACGCTCCCTTCTGGCCCCGCCGCTCGCTGCAG GAGAGGTGCGCCGGCGACGACACGAGGAGCGAGCACGGTGTGGCGGCGTACAGCCGGCGG CTGTCGGCGAGCATCGAGTCGTCGTCGTACGGGTACGACCGGAGCCCCAAGATCGTGGAG GTGGACACCGGGAGGCCCAAGTCGCGGTCGTCGTCGTCGCGGCGGGCGAGCTCCCCGCTG CTGCTCGACGCCGCTGGGTGCGCGAGCGGCGGCGAGGACTGGTGCGCCAACTCCATGTCG TCGCCGCTCCCGTGCTACCTCCCCGGCGGCGCGCCGCCGCCCCGCATCGCCGTCCCGACG TCGCGCCACTTCCCCGACTACGACTGGTGCGCGCTGGAGAAGGCCCGGCCGGCGACGGCG CAGAGCACGCCGCGGTACGCGCACGCGCCGCCGACGCCGACCAAGAGCGTGTGCGGCGGC GGCGGCGGCGGCGGCATCCACTCGTCGCCGCTCAACTGCCCGAACTACATGTCCAACACG CAGTCGTTCGAGGCGAAGGTGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGACCGGC GGCGCCGGCGCCGGCGGCGGCCGGAAGCGGGTGCCGCTGAGCGAGGTGGTGGTGGTGGAG TCCAGGGCGAGCTTGAGCGGCGTGGGCATGCAGCGCTCGTGCAACCGGGTGCAGGAGGCG TTCAACTTCAAGACGGCCGTCGTCGGCCGCCTCGACCGCTCGTCGGAGTCCGGCGAGAAC GACCGCCACGCGTTCTTGCAGAGGAGGTGGTGA
Protein |
471 aa |
>Os05t0187500-01 IQ calmodulin-binding motif family protein, Positive regulator of brassinosteroid signalling, Regulation of grain width and weight MGKAARWFRNMWGGGRKEQKGEAPASGGKRWSFGKSSRDSAEAAAAAAAAAAEASGGNAA IARAAEAAWLRSVYADTEREQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSKGRSAP VLAATVAGDTRSLAAAAVRIQTAFRGFLAKKALRALKALVKLQALVRGYLVRRQAAATLQ SMQALVRAQATVRAHRSGAGAAANLPHLHHAPFWPRRSLQERCAGDDTRSEHGVAAYSRR LSASIESSSYGYDRSPKIVEVDTGRPKSRSSSSRRASSPLLLDAAGCASGGEDWCANSMS SPLPCYLPGGAPPPRIAVPTSRHFPDYDWCALEKARPATAQSTPRYAHAPPTPTKSVCGG GGGGGIHSSPLNCPNYMSNTQSFEAKVRSQSAPKQRPETGGAGAGGGRKRVPLSEVVVVE SRASLSGVGMQRSCNRVQEAFNFKTAVVGRLDRSSESGENDRHAFLQRRW*
CDS
chr05:5365122..5365565 (+ strand) : 444 bp
chr05:5365652..5365864 (+ strand) : 213 bp
chr05:5365946..5366701 (+ strand) : 756 bp
FASTA
>Os05t0187500-01 class=Sequence position=chr05:5365122..5366701 (+ strand) ATGggcaagg cggcgcggtg gttccgcaac atgtggggag gagggaggaa ggagcagaag ggcgaggcgc cggcgagtgg ggggaagagg tggagcttcg ggaagtcgtc gagggactcg gcggaggccg cggcggctgc tgctgcggcg gcggcggagg cttccggggg caatgcggcg atcgccaggg cggccgaggc ggcgtggctc aggtcggtgt acgccgacac ggagcgggaG CAGAGCAAGC ACGCCATCGC CGTCGCCGCG GCCACCGCGG CGGCGGCTGA TGCCGCCGTG GCGGCCGCTC AGGCCGCCGT CGCCGTCGTG CGGCTTACTA GCAAGGGCCG CTCGGCTCCC GTCCTCGCCG CCACCGTCGC CGGCGACACG CGCAGCCTTG CCGCCGCCGC CGTCAGAATC CAGACGGCAT TCAGAGGCTT CCTGGTAAGC AACGGGTGCT CGTCTTCTTG CTCTGGTTTC GTCGTCGTCG TCGTCGCCAT TGTCGTTAAT CATGGCGTGT GTTCGTGCAG GCGAAGAAGG CGCTGCGAGC GCTCAAGGCG CTGGTGAAGC TGCAGGCGCT GGTGCGCGGC TACCTCGTTC GCCGGCAGGC CGCCGCCACG CTGCAGAGCA TGCAGGCGCT CGTCCGCGCC CAGGCCACTG TCCGCGCCCA CCGCAGTGGC GCCGGCGCCG CCGCCAATCT CCCGCACCTC CACCACGCTC CCTTCTGGCC CCGCCGCTCG CTGGTACGCC GCTGGCTAAA TCTCGCCGAC GACATCGCCA TGTATATGTT CGATGTTGAC GTTGTGTGTT GGCGATGGAT GCAGCAGGAG AGGTGCGCCG GCGACGACAC GAGGAGCGAG CACGGTGTGG CGGCGTACAG CCGGCGGCTG TCGGCGAGCA TCGAGTCGTC GTCGTACGGG TACGACCGGA GCCCCAAGAT CGTGGAGGTG GACACCGGGA GGCCCAAGTC GCGGTCGTCG TCGTCGCGGC GGGCGAGCTC CCCGCTGCTG CTCGACGCCG CTGGGTGCGC GAGCGGCGGC GAGGACTGGT GCGCCAACTC CATGTCGTCG CCGCTCCCGT GCTACCTCCC CGGCGGCGCG CCGCCGCCCC GCATCGCCGT CCCGACGTCG CGCCACTTCC CCGACTACGA CTGGTGCGCG CTGGAGAAGG CCCGGCCGGC GACGGCGCAG AGCACGCCGC GGTACGCGCA CGCGCCGCCG ACGCCGACCA AGAGCGTGTG CGGCGGCGGC GGCGGCGGCG GCATCCACTC GTCGCCGCTC AACTGCCCGA ACTACATGTC CAACACGCAG TCGTTCGAGG CGAAGGTGCG TTCGCAGAGC GCGCCGAAGC AGCGGCCGGA GACCGGCGGC GCCGGCGCCG GCGGCGGCCG GAAGCGGGTG CCGCTGAGCG AGGTGGTGGT GGTGGAGTCC AGGGCGAGCT TGAGCGGCGT GGGCATGCAG CGCTCGTGCA ACCGGGTGCA GGAGGCGTTC AACTTCAAGA CGGCCGTCGT CGGCCGCCTC GACCGCTCGT CGGAGTCCGG CGAGAACGAC CGCCACGCGT TCTTGCAGAG GAGGTGGTGA