Locus

Os05g0432200

Description

Similar to Gibberellin-regulated protein 2 precursor.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

Oryzabase Gene Name Synonym(s)

Transcript Evidence

CT833251 (DDBJ, Best hit)

Protein Evidence

NP_001152401.1 (RefSeq)

Literature

Note

Manual Curation

Functional domain (InterPro)

Gibberellin regulated protein (IPR003854)

Expression Databases

TENOR (Os05t0432200-00)

Others

KEGG (Os05t0432200-00)

Transcript

665 bp

>Os05t0432200-00 Similar to Gibberellin-regulated protein 2 precursor.
ATCACCTCCACCTCGCAAACAGAACCAGTACTTTAATTTCACCTTGCAAATTCAGTTGAA
TTCGGCTCGTTCAGGTTCAGTCGTTTGATCATCATGGCCAGTATGGCCAAGTCGCTCTTG
TGCATCTCGCTCGTCGCCATCCTGCTCCTCGTCGAGACTACTGCTCCACATGGACAAGCT
TACGCCATCGATTGCGGGGCGAAGTGCGGGTACCGGTGCAGCAAGTCGGGGCGGCCGAAG
ATGTGCCTGAGAGCATGCGGCACCTGCTGCCAGCGCTGCGGCTGCGTGCCGCCGGGCACC
TCCGGCAACGAGAACGTCTGCCCCTGCTACGCCAACATGACCACCCACAACGGCCGCCAC
AAGTGCCCTTGATCATCTCGACCAATATATCACCGCTCGATCACCGCGCCGCCGCTTTGC
TATCCAACCGACCGGTGATGATACATGGCGGCAACCTTGTGATGATCCTAGCTAGCTAGA
TGTGCTACCTACTTCGTGCCTGCATGCATGTAGCTTGCATATGCATGCTAGCTTTGCTAT
ATCGCGTATTTGCTACTTGGAATATGTATGATGTGTGTGCATATATATGTGGCGTGTCGT
GATCGATCGATCGATCGACCGTGTACGAGCAAATAAGTAATATAATGAAGTATTTGCTTT
TATGA

CDS

279 bp

>Os05t0432200-00 Similar to Gibberellin-regulated protein 2 precursor.
ATGGCCAGTATGGCCAAGTCGCTCTTGTGCATCTCGCTCGTCGCCATCCTGCTCCTCGTC
GAGACTACTGCTCCACATGGACAAGCTTACGCCATCGATTGCGGGGCGAAGTGCGGGTAC
CGGTGCAGCAAGTCGGGGCGGCCGAAGATGTGCCTGAGAGCATGCGGCACCTGCTGCCAG
CGCTGCGGCTGCGTGCCGCCGGGCACCTCCGGCAACGAGAACGTCTGCCCCTGCTACGCC
AACATGACCACCCACAACGGCCGCCACAAGTGCCCTTGA

Protein

92 aa

>Os05t0432200-00 Similar to Gibberellin-regulated protein 2 precursor.
MASMAKSLLCISLVAILLLVETTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQ
RCGCVPPGTSGNENVCPCYANMTTHNGRHKCP*

5'UTR

chr05:21198105..21198197 (+ strand) : 93 bp

CDS

chr05:21198198..21198260 (+ strand) : 63 bp

chr05:21198373..21198406 (+ strand) : 34 bp

chr05:21198513..21198694 (+ strand) : 182 bp

3'UTR

chr05:21198695..21198987 (+ strand) : 293 bp

FASTA

>Os05t0432200-00 class=Sequence position=chr05:21198105..21198987 (+ strand)
ATCACCTCCA CCTCGCAAAC AGAACCAGTA CTTTAATTTC ACCTTGCAAA TTCAGTTGAA TTCGGCTCGT TCAGGTTCAG
TCGTTTGATC ATCATGGCCA GTATGGCCAA GTCGCTCTTG TGCATCTCGC TCGTCGCCAT CCTGCTCCTC GTCGAGGTAA
TTAATCAGAT ATTTCAAACT GATCTTTTAA CCTAAACGAA ACGGTTTCCT GAATTGTATA TATTTCAGTT ACTGATCCGA
TCCTGTTTAT TTCTTGTTTG GTCTTCAGAC TACTGCTCCA CATGGACAAG CTTACGCCAT CGGTAAGCAA TGCGTGATCT
AGTTCAGTTT TTCTTTTCCC TTTTTTTCTG ATCTGTGTGA GTGTGATGAA CTGATGAGTT GCATGCAAAT GTATGTAATC
TCGTGTAGAT TGCGGGGCGA AGTGCGGGTA CCGGTGCAGC AAGTCGGGGC GGCCGAAGAT GTGCCTGAGA GCATGCGGCA
CCTGCTGCCA GCGCTGCGGC TGCGTGCCGC CGGGCACCTC CGGCAACGAG AACGTCTGCC CCTGCTACGC CAACATGACC
ACCCACAACG GCCGCCACAA GTGCCCTTGA TCATCTCGAC CAATATATCA CCGCTCGATC ACCGCGCCGC CGCTTTGCTA
TCCAACCGAC CGGTGATGAT ACATGGCGGC AACCTTGTGA TGATCCTAGC TAGCTAGATG TGCTACCTAC TTCGTGCCTG
CATGCATGTA GCTTGCATAT GCATGCTAGC TTTGCTATAT CGCGTATTTG CTACTTGGAA TATGTATGAT GTGTGTGCAT
ATATATGTGG CGTGTCGTGA TCGATCGATC GATCGACCGT GTACGAGCAA ATAAGTAATA TAATGAAGTA TTTGCTTTTA
TGA

Locus: Os05g0432200

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

Link to RiceXPro

Graph view ()

Locus: Os05g0432200

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

Link to RiceFREND

MR list ()

HyperTree ()