Os05t0554400-01

Locus

Os05g0554400

Description

Phosphatidyl serine synthase family protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

SUI2

CGSNL Gene Name

SHORTENED UPPERMOST INTERNODE 2

Oryzabase Gene Symbol Synonym(s)

OsSUI2

Oryzabase Gene Name Synonym(s)

Shortened Uppermost Internode 2

Transcript Evidence

AK107427 (DDBJ, Best hit)

Protein Evidence

B6SVL1 (UniProt)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: phosphatidylserine biosynthetic process (GO:0006659)

Functional domain (InterPro)

Phosphatidyl serine synthase (IPR004277)

Full-length cDNA

002-128-A03 (Online Clone Ordering)

Expression Databases

TENOR (Os05t0554400-01)

RiceXPro (AK107427)

Others

Oryzabase (19639)

KEGG (Os05t0554400-01 (EC:2.7.8.-))

Transcript

1765 bp

>Os05t0554400-01 Phosphatidyl serine synthase family protein.
TCATCCAACCCAAGTACCCAACCCGCGTCGTCATCGTCGTCTTCCTACTTCCTCCTCCTC
CCCACCCCACGCACGCGCGTGCGGCGCCGATCGCGGCCGACGCCGAGATTTCCGCGTGCG
CGTGGAGATAGGGCACACCCGTTCTCTCTCTCCCTCTCTCGGGCTCTGAAGCGCTTCGCT
TGGTTTGGCGTGTTGTTTGGCTGCCGCGGCAGTTTTCTCCTGTCACATATCGCAGAGGGT
TCTGGAAGTGGGAACATGGAGGCGAAGCAGAGGACGAGGCATCGCGACGGAGAGGAGAGG
AGGCTCGTAGCGGCGGCGGATGGCGGCGCCGAGGAGTACGACCCATGGACGGCGTGGCTC
TACAAGCCGCACACCATCTCGGTGCTCCTCGTCGGTGCTTGCCTTCTAATTTGGGCAAGT
GGAGCGCTTGATCCAGAGGGTGCTTCTTATCACAGTAGTGCGACATCTATTAAGAGGGGT
GTCTGGGCTATGATTGCAGTCTTCCTTGCTTACTGCACTCTCCAAGCACCTTCAACGATA
CTTATTAGGCCCCATCCTGCTGTCTGGCGCCTGGTGCACGGACTGGCTGTCGTTTACCTT
GTCGCTCTAGCCTTTCTTCTTTTCCAGAACCGCGATGATGCTCGCCAGTTCATGAAACAC
CTTTACCCTGATCTTGGAGTTGAATTGCCGGAGAGATCTTATGGAGCTGACTGCCGTCTG
TATGTTCCGGAAAACCCTAAAAACAAGTTCATAAATATTTATACATTATTTGACGAATTT
GTGGTTGCCCATATTTTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTT
CTTTGGGTCCTCTCGATTGGTTTCGAGCTAATGGAGCTTACATTCAGACATATGTTGCCA
AACTTTAATGAGTGCTGGTGGGATAGTATTATTTTGGATATCTTGATCTGCAACTGGTTT
GGTATATGGGCGGGGATGCACACAGTCCGTTACTTTGACGGTAAAACATATGAGTGGGTT
GGACTGAGCCGACAGCCAAGCATCATGGGCAAGGTGAAAAGATCACTGAGCCAGTTCACC
CCTGCACAATGGGACAAGGATCAATGGTACCCTTTCATGGGGCCGTTGCGGTTCGTTCAA
GTGTTGTTCCTGTGCGTTGTTTTCATGACAGTGGAGCTCAACACATTTTTTCTTAAATTT
TGCCTCTGGATTCCTCCAAGGAATCCTTTGGTTGTGTACAGATTAATCCTATGGTGGTTG
ATTGCTATTCCAACCATCCGTGAGTACAACTCCTACTTGCAAAACAGCAAACCGGTGAAG
AAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGT
ATGAAGTTTGGACATGGGCTGTTTCATGATCCCATGCCTACTTGGTTGATCATCTTTTGG
AGTTCGGTGGGGGTAGCACTAGTGGTTTTCTTGCTTGCATGGTCTTGGAGGAATCACCTG
AAATATCAGAGAAAGCGGCTATAATGGATTAATTTTTCGGAAGATTTTCGACTCTGGACC
CCCTTCAAACTTGTTTCTTCTTCTTGATAGGATGTACATATGTGATGGGTGATGATGTAA
CTTAAATGTGATGGGTAATTATGTAACTTTAAATCCTAGGATAAAGCAATTTTCAGCTAC
ATTTCACATTATGTTTTACAATAGCCAATTGTTGCCTCGCAAGAGGGATGGCTAATTTCA
GATTAATAAGTGAAATATTACCATG

CDS

1269 bp

>Os05t0554400-01 Phosphatidyl serine synthase family protein.
ATGGAGGCGAAGCAGAGGACGAGGCATCGCGACGGAGAGGAGAGGAGGCTCGTAGCGGCG
GCGGATGGCGGCGCCGAGGAGTACGACCCATGGACGGCGTGGCTCTACAAGCCGCACACC
ATCTCGGTGCTCCTCGTCGGTGCTTGCCTTCTAATTTGGGCAAGTGGAGCGCTTGATCCA
GAGGGTGCTTCTTATCACAGTAGTGCGACATCTATTAAGAGGGGTGTCTGGGCTATGATT
GCAGTCTTCCTTGCTTACTGCACTCTCCAAGCACCTTCAACGATACTTATTAGGCCCCAT
CCTGCTGTCTGGCGCCTGGTGCACGGACTGGCTGTCGTTTACCTTGTCGCTCTAGCCTTT
CTTCTTTTCCAGAACCGCGATGATGCTCGCCAGTTCATGAAACACCTTTACCCTGATCTT
GGAGTTGAATTGCCGGAGAGATCTTATGGAGCTGACTGCCGTCTGTATGTTCCGGAAAAC
CCTAAAAACAAGTTCATAAATATTTATACATTATTTGACGAATTTGTGGTTGCCCATATT
TTGGGTTGGTGGGGTAAAGCCGTAATGATACGAAACCAGCTTCTTCTTTGGGTCCTCTCG
ATTGGTTTCGAGCTAATGGAGCTTACATTCAGACATATGTTGCCAAACTTTAATGAGTGC
TGGTGGGATAGTATTATTTTGGATATCTTGATCTGCAACTGGTTTGGTATATGGGCGGGG
ATGCACACAGTCCGTTACTTTGACGGTAAAACATATGAGTGGGTTGGACTGAGCCGACAG
CCAAGCATCATGGGCAAGGTGAAAAGATCACTGAGCCAGTTCACCCCTGCACAATGGGAC
AAGGATCAATGGTACCCTTTCATGGGGCCGTTGCGGTTCGTTCAAGTGTTGTTCCTGTGC
GTTGTTTTCATGACAGTGGAGCTCAACACATTTTTTCTTAAATTTTGCCTCTGGATTCCT
CCAAGGAATCCTTTGGTTGTGTACAGATTAATCCTATGGTGGTTGATTGCTATTCCAACC
ATCCGTGAGTACAACTCCTACTTGCAAAACAGCAAACCGGTGAAGAAGGTTGGGGCTTTT
TGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGTATGAAGTTTGGACAT
GGGCTGTTTCATGATCCCATGCCTACTTGGTTGATCATCTTTTGGAGTTCGGTGGGGGTA
GCACTAGTGGTTTTCTTGCTTGCATGGTCTTGGAGGAATCACCTGAAATATCAGAGAAAG
CGGCTATAA

Protein

423 aa

>Os05t0554400-01 Phosphatidyl serine synthase family protein.
MEAKQRTRHRDGEERRLVAAADGGAEEYDPWTAWLYKPHTISVLLVGACLLIWASGALDP
EGASYHSSATSIKRGVWAMIAVFLAYCTLQAPSTILIRPHPAVWRLVHGLAVVYLVALAF
LLFQNRDDARQFMKHLYPDLGVELPERSYGADCRLYVPENPKNKFINIYTLFDEFVVAHI
LGWWGKAVMIRNQLLLWVLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAG
MHTVRYFDGKTYEWVGLSRQPSIMGKVKRSLSQFTPAQWDKDQWYPFMGPLRFVQVLFLC
VVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIREYNSYLQNSKPVKKVGAF
CWLSLAICIVELLICMKFGHGLFHDPMPTWLIIFWSSVGVALVVFLLAWSWRNHLKYQRK
RL*

5'UTR

chr05:27552789..27552958 (+ strand) : 170 bp

chr05:27553094..27553178 (+ strand) : 85 bp

CDS

chr05:27553179..27553333 (+ strand) : 155 bp

chr05:27554049..27554114 (+ strand) : 66 bp

chr05:27554295..27554354 (+ strand) : 60 bp

chr05:27554749..27554839 (+ strand) : 91 bp

chr05:27555217..27555271 (+ strand) : 55 bp

chr05:27555361..27555440 (+ strand) : 80 bp

chr05:27555554..27555667 (+ strand) : 114 bp

chr05:27555750..27555834 (+ strand) : 85 bp

chr05:27556361..27556452 (+ strand) : 92 bp

chr05:27556996..27557249 (+ strand) : 254 bp

chr05:27557346..27557434 (+ strand) : 89 bp

chr05:27557852..27557979 (+ strand) : 128 bp

3'UTR

chr05:27557980..27558220 (+ strand) : 241 bp

FASTA

>Os05t0554400-01 class=Sequence position=chr05:27552789..27558220 (+ strand)
TCATCCAACC CAAGTACCCA ACCCGCGTCG TCATCGTCGT CTTCCTACTT CCTCCTCCTC CCCACCCCAC GCACGCGCGT
GCGGCGCCGA TCGCGGCCGA CGCCGAGATT TCCGCGTGCG CGTGGAGATA GGGCACACCC GTTCTCTCTC TCCCTCTCTC
GGGCTCTGAA GTAATCCTTC GCTTCTGCTT CTTTCTTCTT CTGCATGTCC TGTCTGTCCC CCTCGTCTCG TCTCGTCTCG
TCTCGTCTCT TGCTTTCGCC TCTCCTGACC TGACCGCGAC AATCCGTGGT GGTTATATCG CGCAGGCGCT TCGCTTGGTT
TGGCGTGTTG TTTGGCTGCC GCGGCAGTTT TCTCCTGTCA CATATCGCAG AGGGTTCTGG AAGTGGGAAC ATGGAGGCGA
AGCAGAGGAC GAGGCATCGC GACGGAGAGG AGAGGAGGCT CGTAGCGGCG GCGGATGGCG GCGCCGAGGA GTACGACCCA
TGGACGGCGT GGCTCTACAA GCCGCACACC ATCTCGGTGC TCCTCGTCGG TGCTTGCCTT CTAATGTAAG TGCTCTTCCA
CGATTAAATT TCACAAATTC GTTTTTATTT TTTTTTCTCG CTTTGCTGCC TCTGCCTGTG ACTTAAGGGC TAAGGCTGTA
AATTTCTTGG TGGGAGAACT GGAAAAAAAG GCCTTGTTGT GTTGGGGCAA AGTACAATTC AACAGATGCC AGGGCTTCTG
CCTATCAGGT GCATCAACAG TGTCAGAGTT GAAAGCAGGG CATGTAGTAC TCATTGTGAT TTTTTTACTT TCTCTGAAAG
AAAAAGGTGA AATTTTTGGG TCGGGAAATT TAGTGATTTT GTGCCAGCAA GTTGAGGTTT CTGAATGATT GAACGAACAT
GAAAGCATGG CAGTCTGGTT CAGCAAGGCT AGCAAACAAC CGAGCGTACG AGTGGCTGAG GAGAATCGGA ATCATGTTCA
AGAATCTCGT GCGAAAGCTT CCCTAGAACA ATCATTTTTT CCCATATCAT TTTTAGCAGG TGCAAATTAC ATGGGAAGTA
CATTCCTCTC GTCCCTTTTT TTTAACTGTA GAAACGGCTC ACCAAGAACT TTATTGTTGC TATTGCTTCA TGAAAGGATT
AAGCATATAA CTTTGTGTCT GAAACAACCA TTAGCTAGGC TAGGCTGTTG AGTGGTTGGT TGTGAACTTG CTGGGGCGTT
CTCCTTTTCA CTTTCTCGTG GTGCTGTCTG ATTTCATGTT CAATCATGTT CCCGTTTCAG TTGGGCAAGT GGAGCGCTTG
ATCCAGAGGG TGCTTCTTAT CACAGTAGTG CGACATCTAT TAAGAGGTAA TGACCGAAAA CCTTTTTTTT TTACTTTACT
GGAAAGTGAT GCAATCATCT AAGGGAACTC TGGTTACTTC TCTACTTTGA TTGTGTCTTT TGGACTTGAG CTGTTCTCCT
CTCACCACTG CACAATGATT GGGAGAGAGT GACACTGACT CATATTTTCT CACTGACACT CTCCAGGGGT GTCTGGGCTA
TGATTGCAGT CTTCCTTGCT TACTGCACTC TCCAAGCACC TTCAACGTGA GTTAGCCCCC CTCTTCTTAT ATGTATTTCA
AACATTGGAA CTATGTTAGT GCAGTGGCTG TCGTTGTCAG GCATTTTTCT TTAAGTAGGG AAATTGAAGG TTTTCTGCTT
CAAAGAGGTG ACCCACGTGT TACTGTATGA GTGAGACCAT ATAGTGGCCA ATTCTCTTGA AAGTGTAGGG CTTATTATTC
GTCAGGTTGT TTTTAATGGT GACACAAAAA TTACCTTGAG GGACCCAATA CCAATGCCAT TCTCATGCTG TTTTTGTACT
TGCTACTTTT GTCTTCTTTA TCTCCTTGGG TTCATAACAA TTTGAGAACC TGTAAATCTA CTGTGCATCT CTAATATTTT
TGCATGATGA TGATTCAATG TTCTGGCAAT ATTGTCACAG GATACTTATT AGGCCCCATC CTGCTGTCTG GCGCCTGGTG
CACGGACTGG CTGTCGTTTA CCTTGTCGCT CTAGCCTTTC TTCTTTTCCA GGTTAGTTGT TACTATTGAA AAATTCATAC
ATCGATAAAG TAGGACAAAA AATGCCCTTT CAATAATATC CCATGCACGT AAAATGTTAG AAAATGGCGG GAGATGTCTA
TTATTCATAG GGTTATTTTG GGAAGTTCTT ACAGGAGCGT GAAGTGGCAA GTATTTGTGA AAGAAAAAAC TTGAGATCCA
AGCAAATGCA AATTGTCTTG TCAAAAAAAA AAGTTGGAAG TCTTGTATCC AAACTATTTG ATTATCAAAA TTCAGTATAA
ATGGCATTTT TTCAAGACTC TTGAGCGAGG GGCCTCAACT ACGTAGAGAT ATGCTACATC TTGGATATCT TGTACTGTAA
TAATTCTTAT TTCTTTCTCG TTTTCCAGAA CCGCGATGAT GCTCGCCAGT TCATGAAACA CCTTTACCCT GATCTTGGAG
TTGGTAATAT CTTTACATCG AAAGGATTTA CACTGGAAAT TAAATATTGT AGAAGAAATG GTGCTGACAA ACATTTCTGT
ACACTAATGC AGAATTGCCG GAGAGATCTT ATGGAGCTGA CTGCCGTCTG TATGTTCCGG AAAACCCTAA AAACAAGTTC
ATAAATATTT ATGTATGATT TTTCATTTGA ACCTTCCTAT TTCATGCTCT GGTTTTTGTT ATTATTGTAG TTATTATCAT
TGTTATTACC CCATCATATT TGACGGTTTG ATATACATAT AGGAGACATT ATTTGACGAA TTTGTGGTTG CCCATATTTT
GGGTTGGTGG GGTAAAGCCG TAATGATACG AAACCAGCTT CTTCTTTGGG TCCTCTCGAT TGGTTTCGAG CTAATGGAGG
TTAGATATGG TTACTCAACC TTTTGTTATC TTTTACTTGT TATCTCTAAC AAGGTATTGT GCTTATTATG ACCTTTTGCA
GCTTACATTC AGACATATGT TGCCAAACTT TAATGAGTGC TGGTGGGATA GTATTATTTT GGATATCTTG ATCTGCAACT
GGTTTGGTAG GACAATCGGA GACAGCTGAC TTTCATGTTG TATACATTCA GTGACATTGA TGATACATTT TTTACATCTA
AAGTTATTAG TAAAACAAAG TTAGGCAGAT TAAAATAATA TAGTGTTTTT GGGTTTGCAT ATTTTATACA GTTTGTTTGG
ATCTAACTCT TATCAACTGA ACATGATAAT ATAGAAAATG AATAGCGATG TGATGTATCT GAGAGTTTTA AGAAGAAAAC
TTAGACCTGA TGCACATGCA TACTGCTGAC ATTAAACACT TACTGTTTAT GAAGTAATAT AATTTATCTT CTTCTATCAG
TTCATGGGTT GAAAGCAATC TTTCTATTTC AGTAACCAGT TATTGAAAGA GTACCTGCAT ATGCACGTTA GGGTCAAAAG
TGACAAGTAA ATGTGAATGG AGGAAGAACA AATCTGCCAT ATAAGCCTCA CTCTTAGCAG TAGGCTATGG AGTGTTTTAT
GTGTTCAGCT TCATCTAAAT ATTTTGGCTG AAATGCTAAT ATTCTTATTC AGGTATATGG GCGGGGATGC ACACAGTCCG
TTACTTTGAC GGTAAAACAT ATGAGTGGGT TGGACTGAGC CGACAGCCAA GCATCATGGG CAAGGTATGT TACCAAACAA
ACAAATTGTT TCTTATTTGC AAATAGGTTA GTACCTTTTT TTAGGACTGT TCTTTTAATC TTCATTCATC ATGGCCCTTA
GGCCTAGATT TTTTTTTTGT ACCTGCTGAA TTTTCCTGGG CTATTGTGCT TTTTGTAAGA ATTTCCTCAT CGATTCTTTC
TTGAGTTACG ACTTACAAGA GCCTCTTGCT ACTGCTAAGT CCATGGGAGC ATTCTATAAC AATGCAGTCG CTGAGCAAAA
GTAAATCACT TTGACTTCTT GTCTGTAGTA CGCCAAACAA CATGTGAGGT TTTCCCAGTG GGACTGTATT GATTTCTGTT
GCTCTGTCCA AACTCTAAAC TGTCAATTGC CATTATTGAT ACCTGACTTC ATAATTTATT TTGTTGTATA CCATTCTGGC
ATTCAGTGTG TTTTATCTGA TTGGACTATA TGCACATTTG TGCAGTTACA TTCTGCTTCA GACTGCATAC TATAGTTAGG
TTGAACCCAT TTACAGTTTA CCGACCTTCC TTTACTTGCA TATGCAGGTG AAAAGATCAC TGAGCCAGTT CACCCCTGCA
CAATGGGACA AGGATCAATG GTACCCTTTC ATGGGGCCGT TGCGGTTCGT TCAAGTGTTG TTCCTGTGCG TTGTTTTCAT
GACAGTGGAG CTCAACACAT TTTTTCTTAA ATTTTGCCTC TGGATTCCTC CAAGGAATCC TTTGGTTGTG TACAGATTAA
TCCTATGGTG GTTGATTGCT ATTCCAACCA TCCGTGAGTA CAACTCCTAC TTGCAAAACA GGTTATCCCA ATTTCCCTGC
ACGCCCAATA GCATTGCACA TTTTTTACAA TTTTACTTAA TGGCTTGCTA ATATATATTT TTTCATGGTC ACACCAGCAA
ACCGGTGAAG AAGGTTGGGG CTTTTTGCTG GCTCTCTCTA GCTATATGCA TTGTAGAGCT TCTTATATGT ATGAAGTTTG
GACATGGTGA GTTACTCTCT TCTGACATCA TCATCACTTG TGAAATAATT GATCTGATTT GAAAAATTAC CTTATGGTCG
CTTGATTTTC TCGTGATATA TACtactccc tccggttcta taataattaa cgttttggac aaagttaagg tcaaactttt
ataactttga ccatcaataa ctttaaaaat atttagttta aagaaactag aacaacatat atagatttgt ctttcaaaac
actataataa aagtaaacat gtatttattt attgtatata ttataataga aaaataagat caaaggtata ttttgtagac
cgtgtcattg tctaaaacat caattaaaat gaaaccggag ggagtaGTAT ATATTTGGAA CATTAAATGT TAAGAGTGCC
TAACTTTTTT GTAATCTGGA TAGGGCTGTT TCATGATCCC ATGCCTACTT GGTTGATCAT CTTTTGGAGT TCGGTGGGGG
TAGCACTAGT GGTTTTCTTG CTTGCATGGT CTTGGAGGAA TCACCTGAAA TATCAGAGAA AGCGGCTATA ATGGATTAAT
TTTTCGGAAG ATTTTCGACT CTGGACCCCC TTCAAACTTG TTTCTTCTTC TTGATAGGAT GTACATATGT GATGGGTGAT
GATGTAACTT AAATGTGATG GGTAATTATG TAACTTTAAA TCCTAGGATA AAGCAATTTT CAGCTACATT TCACATTATG
TTTTACAATA GCCAATTGTT GCCTCGCAAG AGGGATGGCT AATTTCAGAT TAATAAGTGA AATATTACCA TG