Locus
Os06g0114200
Description
Similar to ATARFB1B; GTP binding.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
ARFB1A
CGSNL Gene Name
ADP-RIBOSYLATION FACTOR B1A
Oryzabase Gene Symbol Synonym(s)
OsARFB1a, ARFB1a
Oryzabase Gene Name Synonym(s)
ADP-ribosylation factor B1a
Transcript Evidence
ab initio prediction
Protein Evidence
NP_197208.1 (RefSeq)
Literature
Note
Manual Curation
Gene Ontology (GO)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
Functional domain (InterPro)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
Expression Databases
TENOR (Os06t0114200-00)
Others
Oryzabase (21007)
Transcript |
570 bp |
>Os06t0114200-00 Similar to ATARFB1B; GTP binding. ATGGGGCAGTCCCTGAGGAAGCTGTTCGACAGCTTCTGCACAAAGGAGATGAAGGTTCTG ATGCTTGGGCTGGATGCTGCTGGGAAGACGACGATTCTGTACAGGCTGCACATTGGCGAA GTTCTGTCCTCCATACCCACAATCGGGTTCAACGTGGAGAAGGTGGAGTACAAGAACGTG GCCTTCACGGTGTGGGACGTGGGAGGCCAGGACAAGCTCCGACCTCTCTGGAGACAATAC TTCAGAAACGCCGACGCCCTGATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGA GTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATC CTCCTCCTCGCCAACAAGCAGGACCTGAAAGGGGCGATGAGCTCGTCGGAGGTGTGCCAG CGGCTGGGGGCGTACGAGGAGCTCAAGAACCGGAGGTGGCACTGTCAGGGAGCCTCAGCG CTCACCGGCGACGGCCTCCACGGCGGCCTCGACTGGCTGGCCTCCACCCTCCGCGACGTC CAGACGTGGGGCACCTCCGTCCGCTTCTAG
CDS |
570 bp |
>Os06t0114200-00 Similar to ATARFB1B; GTP binding. ATGGGGCAGTCCCTGAGGAAGCTGTTCGACAGCTTCTGCACAAAGGAGATGAAGGTTCTG ATGCTTGGGCTGGATGCTGCTGGGAAGACGACGATTCTGTACAGGCTGCACATTGGCGAA GTTCTGTCCTCCATACCCACAATCGGGTTCAACGTGGAGAAGGTGGAGTACAAGAACGTG GCCTTCACGGTGTGGGACGTGGGAGGCCAGGACAAGCTCCGACCTCTCTGGAGACAATAC TTCAGAAACGCCGACGCCCTGATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGA GTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATC CTCCTCCTCGCCAACAAGCAGGACCTGAAAGGGGCGATGAGCTCGTCGGAGGTGTGCCAG CGGCTGGGGGCGTACGAGGAGCTCAAGAACCGGAGGTGGCACTGTCAGGGAGCCTCAGCG CTCACCGGCGACGGCCTCCACGGCGGCCTCGACTGGCTGGCCTCCACCCTCCGCGACGTC CAGACGTGGGGCACCTCCGTCCGCTTCTAG
Protein |
189 aa |
>Os06t0114200-00 Similar to ATARFB1B; GTP binding. MGQSLRKLFDSFCTKEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNV AFTVWDVGGQDKLRPLWRQYFRNADALIYVVDSMDRERIGVAKEEFQAIIRDPLMLNSVI LLLANKQDLKGAMSSSEVCQRLGAYEELKNRRWHCQGASALTGDGLHGGLDWLASTLRDV QTWGTSVRF*
CDS
chr06:819373..819426 (+ strand) : 54 bp
chr06:819536..819626 (+ strand) : 91 bp
chr06:819752..819867 (+ strand) : 116 bp
chr06:819961..820086 (+ strand) : 126 bp
chr06:820174..820356 (+ strand) : 183 bp
FASTA
>Os06t0114200-00 class=Sequence position=chr06:819373..820356 (+ strand) ATGGGGCAGT CCCTGAGGAA GCTGTTCGAC AGCTTCTGCA CAAAGGAGAT GAAGGTAACA TCATGTCAGC ATTCTGAAAT CGTTCACCAT TCTCAGTTTT TCATCCTTTC TGATGCTTAA CCAGGTTCAG AATTTTTTTC TCTTCTGATG GATGCTTAAT CAGGTTCTGA TGCTTGGGCT GGATGCTGCT GGGAAGACGA CGATTCTGTA CAGGCTGCAC ATTGGCGAAG TTCTGTCCTC CATACCCACA ATCGGTAGTG ATACATCGTG TTCATTGTCA TTTATTTCAT CGCCGAAATG GGCATGACAT AATCCATTCC TGGACCTGCA TTGACAGACA TACATTCTTT CATCCTGTGA AATGAACGAA TTCCATCAGG GTTCAACGTG GAGAAGGTGG AGTACAAGAA CGTGGCCTTC ACGGTGTGGG ACGTGGGAGG CCAGGACAAG CTCCGACCTC TCTGGAGACA ATACTTCAGA AACGCCGACG CCCTGGTTAA ATCTCATCTT CTGAATCTCT CTCTCGATCG ATCATTGCTT TGCTTCTGAA ATCTGAATGT CTGAAACTGA ATGTGTGGGG AGTTGCAGAT CTACGTGGTT GATTCGATGG ACAGGGAAAG GATAGGAGTA GCCAAGGAGG AGTTCCAGGC CATCATCCGC GACCCCCTCA TGCTCAACAG CGTCATCCTC CTCCTCGCCA ACAAGCAGGA CCTGGTAATT GCTAAAAGCT TGACGAATCA ATGAACAATT TGCCAATGGC GATTAGTTAT ACAACAATTG ACATGTGGAT GCATGATGCA GAAAGGGGCG ATGAGCTCGT CGGAGGTGTG CCAGCGGCTG GGGGCGTACG AGGAGCTCAA GAACCGGAGG TGGCACTGTC AGGGAGCCTC AGCGCTCACC GGCGACGGCC TCCACGGCGG CCTCGACTGG CTGGCCTCCA CCCTCCGCGA CGTCCAGACG TGGGGCACCT CCGTCCGCTT CTAG
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