Locus

Os06g0114200

Description

Similar to ATARFB1B; GTP binding.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

ARFB1A

CGSNL Gene Name

ADP-RIBOSYLATION FACTOR B1A

Oryzabase Gene Symbol Synonym(s)

OsARFB1a, ARFB1a

Oryzabase Gene Name Synonym(s)

ADP-ribosylation factor B1a

Transcript Evidence

ab initio prediction

Protein Evidence

NP_197208.1 (RefSeq)

Literature

Note

Manual Curation

Gene Ontology (GO)

Biological Process: intracellular protein transport (GO:0006886)

Biological Process: small GTPase mediated signal transduction (GO:0007264)

Biological Process: protein transport (GO:0015031)

Cellular Component: intracellular (GO:0005622)

Molecular Function: GTP binding (GO:0005525)

Functional domain (InterPro)

Small GTPase superfamily, Rab type (IPR003579)

Small GTP-binding protein domain (IPR005225)

Small GTPase superfamily, SAR1-type (IPR006687)

Small GTPase superfamily, ARF/SAR type (IPR006689)

Small GTPase superfamily, ARF type (IPR024156)

Expression Databases

TENOR (Os06t0114200-00)

Others

Oryzabase (21007)

Transcript

570 bp

>Os06t0114200-00 Similar to ATARFB1B; GTP binding.
ATGGGGCAGTCCCTGAGGAAGCTGTTCGACAGCTTCTGCACAAAGGAGATGAAGGTTCTG
ATGCTTGGGCTGGATGCTGCTGGGAAGACGACGATTCTGTACAGGCTGCACATTGGCGAA
GTTCTGTCCTCCATACCCACAATCGGGTTCAACGTGGAGAAGGTGGAGTACAAGAACGTG
GCCTTCACGGTGTGGGACGTGGGAGGCCAGGACAAGCTCCGACCTCTCTGGAGACAATAC
TTCAGAAACGCCGACGCCCTGATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGA
GTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATC
CTCCTCCTCGCCAACAAGCAGGACCTGAAAGGGGCGATGAGCTCGTCGGAGGTGTGCCAG
CGGCTGGGGGCGTACGAGGAGCTCAAGAACCGGAGGTGGCACTGTCAGGGAGCCTCAGCG
CTCACCGGCGACGGCCTCCACGGCGGCCTCGACTGGCTGGCCTCCACCCTCCGCGACGTC
CAGACGTGGGGCACCTCCGTCCGCTTCTAG

CDS

570 bp

>Os06t0114200-00 Similar to ATARFB1B; GTP binding.
ATGGGGCAGTCCCTGAGGAAGCTGTTCGACAGCTTCTGCACAAAGGAGATGAAGGTTCTG
ATGCTTGGGCTGGATGCTGCTGGGAAGACGACGATTCTGTACAGGCTGCACATTGGCGAA
GTTCTGTCCTCCATACCCACAATCGGGTTCAACGTGGAGAAGGTGGAGTACAAGAACGTG
GCCTTCACGGTGTGGGACGTGGGAGGCCAGGACAAGCTCCGACCTCTCTGGAGACAATAC
TTCAGAAACGCCGACGCCCTGATCTACGTGGTTGATTCGATGGACAGGGAAAGGATAGGA
GTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATC
CTCCTCCTCGCCAACAAGCAGGACCTGAAAGGGGCGATGAGCTCGTCGGAGGTGTGCCAG
CGGCTGGGGGCGTACGAGGAGCTCAAGAACCGGAGGTGGCACTGTCAGGGAGCCTCAGCG
CTCACCGGCGACGGCCTCCACGGCGGCCTCGACTGGCTGGCCTCCACCCTCCGCGACGTC
CAGACGTGGGGCACCTCCGTCCGCTTCTAG

Protein

189 aa

>Os06t0114200-00 Similar to ATARFB1B; GTP binding.
MGQSLRKLFDSFCTKEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNV
AFTVWDVGGQDKLRPLWRQYFRNADALIYVVDSMDRERIGVAKEEFQAIIRDPLMLNSVI
LLLANKQDLKGAMSSSEVCQRLGAYEELKNRRWHCQGASALTGDGLHGGLDWLASTLRDV
QTWGTSVRF*

CDS

chr06:819373..819426 (+ strand) : 54 bp

chr06:819536..819626 (+ strand) : 91 bp

chr06:819752..819867 (+ strand) : 116 bp

chr06:819961..820086 (+ strand) : 126 bp

chr06:820174..820356 (+ strand) : 183 bp

FASTA

>Os06t0114200-00 class=Sequence position=chr06:819373..820356 (+ strand)
ATGGGGCAGT CCCTGAGGAA GCTGTTCGAC AGCTTCTGCA CAAAGGAGAT GAAGGTAACA TCATGTCAGC ATTCTGAAAT
CGTTCACCAT TCTCAGTTTT TCATCCTTTC TGATGCTTAA CCAGGTTCAG AATTTTTTTC TCTTCTGATG GATGCTTAAT
CAGGTTCTGA TGCTTGGGCT GGATGCTGCT GGGAAGACGA CGATTCTGTA CAGGCTGCAC ATTGGCGAAG TTCTGTCCTC
CATACCCACA ATCGGTAGTG ATACATCGTG TTCATTGTCA TTTATTTCAT CGCCGAAATG GGCATGACAT AATCCATTCC
TGGACCTGCA TTGACAGACA TACATTCTTT CATCCTGTGA AATGAACGAA TTCCATCAGG GTTCAACGTG GAGAAGGTGG
AGTACAAGAA CGTGGCCTTC ACGGTGTGGG ACGTGGGAGG CCAGGACAAG CTCCGACCTC TCTGGAGACA ATACTTCAGA
AACGCCGACG CCCTGGTTAA ATCTCATCTT CTGAATCTCT CTCTCGATCG ATCATTGCTT TGCTTCTGAA ATCTGAATGT
CTGAAACTGA ATGTGTGGGG AGTTGCAGAT CTACGTGGTT GATTCGATGG ACAGGGAAAG GATAGGAGTA GCCAAGGAGG
AGTTCCAGGC CATCATCCGC GACCCCCTCA TGCTCAACAG CGTCATCCTC CTCCTCGCCA ACAAGCAGGA CCTGGTAATT
GCTAAAAGCT TGACGAATCA ATGAACAATT TGCCAATGGC GATTAGTTAT ACAACAATTG ACATGTGGAT GCATGATGCA
GAAAGGGGCG ATGAGCTCGT CGGAGGTGTG CCAGCGGCTG GGGGCGTACG AGGAGCTCAA GAACCGGAGG TGGCACTGTC
AGGGAGCCTC AGCGCTCACC GGCGACGGCC TCCACGGCGG CCTCGACTGG CTGGCCTCCA CCCTCCGCGA CGTCCAGACG
TGGGGCACCT CCGTCCGCTT CTAG

Locus: Os06g0114200

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

Link to RiceXPro

Graph view ()

Locus: Os06g0114200

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

Link to RiceFREND

MR list ()

HyperTree ()