Locus
Os06g0273700
Description
Protein of unknown function DUF231, plant domain containing protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
CGSNL Gene Name
Oryzabase Gene Symbol Synonym(s)
Lip, OsTBL56, TBL56, OsTBL60, TBL60
Oryzabase Gene Name Synonym(s)
leaf senescence protein, trichome birefringence-like 56, trichome birefringence-like 60
Transcript Evidence
AK106489 (DDBJ, Best hit)
Protein Evidence
A2YBL8 (UniProt)
Literature
Note
Manual Curation
Functional domain (InterPro)
Domain of unknown function DUF231, plant (IPR004253)
Full-length cDNA
002-105-A03 (Online Clone Ordering)
Expression Databases
TENOR (Os06t0273700-01)
RiceXPro (AK106489)
Others
Oryzabase (16228)
Oryzabase (21520)
Oryzabase (21521)
KEGG (Os06t0273700-01)
Transcript |
1562 bp |
>Os06t0273700-01 Protein of unknown function DUF231, plant domain containing protein. GTGTCAGTGGAGCTCGATCGATCGGCGACCTCCCACTACTTACACGGCGACATGGCGACG CCACCGGCGAGGCCTCGTCGGTAACCGTCATGAAGCGCCTCTCCATCCGCGGCCTCCTCG CCGGGGCTCGCCGGACCCGCCACGCCGTTGCCGCCAAGGCCACCACGTCCGTCCCGGCTC TCGTCGCGCTCCTCTTCTTCTTCGCCGCCGCCACCTTCTCGGTCTTCTCCCTCGGCTCCT TCCGTTGGCCTGGCGCCGCCGATGATGGCGGTGCGGCTGCCTGCGACGCCGCGCTGGCGC GGGGGCGGGGCGAGTGGATGCGCGACGCCGGCGCGGCGCCGTACTACACCAACGCGACGT GCGGGTTCATCCAGAACTACCAGAACTGCATGAAGCACGGGAGGCCCAGCATGGAGTTCT TGCGGTGGCGGTGGCGTCCCGGTGACGGCGGCGAGGGGTGCGAGCCGCTCGGGCCGTTCG ACGCGGCGCGGTTCTTCCGGCTCGTGCGCGGGAGGTCGATGCTGTTCGTCGGCGACTCGC TGGCGAGCAGCCACGTGACGTCCCTCGTGTGCGCGCTGTCGCAGGTGGAGGCGCCGGCGA GGTCGCGCGACGCGGCGGCGGGGTTCGAGCACTGGCGCTTCCCGGCGCACGGCTTCGCCG TCGCCTACTTCTGGACGCCGTTCCAGGTCCGGTGGCGCCTGACGCGCGGCCCGCCGGAGG CGGTCGGTCCGGAACGGCAGGGCGAGGTGTTCGCCGGCCCGAGCGACCTCCACCTCGACG AGCCCGACGAGCGGTGGACGTCCGCCGCCAAGAGCCACGACTACGTCGTCCTCTCCGCGT CGCACTGGTTCGCGCGCCCCGCCGTGTACTACCAGCACGGCCGCGTCGTCGGCTGCCACG ACTGCGGCGACAGCAACGCCACCGCCACGGCCATTGTCAAGCAGCCAGAGCACGCGCAGC GGGCGGCGTTCCGCGCCGTGCTCGGGGCGCTGGCGCGGCTGGACGGGTTCAACGGCACGG CGATCCTGCGCACGGTGGCGCCGACGCACTACGAGAACGGCGGGTGGTTCGACGGCGGGG AGTGCACCGCGACGCGGCCGGCCAGCGAGAGCGAGGACGGGGCGGCGCCGGAGATGGCGG CGACGGAGGCGGAGTTCTACCGGGCGCAGGTCGAGGAGTTCGCCGCGGCGGCGGCGGCGG CGGCGGCGAGGAACGGCGGCAAGCGGGCGCGGCTGAGGCTGATGGACGTGACGCGGATGA TGCTGCTCCGGCCGGACGGGCACCCGGACCGGCACGGGCATGGCGGCGGCGAGCACGACG GATTCGAGATCGACTGCCTGCACTGGTGCTTGCCCGGAGCGATCGACGTGTGGAACGACC TGCTGCTTCAGATAATCGCATCCTCATGACAACGCTACCTGACGTGACACTCAGCAAAGC ACAGACAAATATGGAGCAATGTAGATGAAAATTTCCCTTGGATTTGCTTTTTTTTTTTTT TTTTTTTTTGTCTTTGCCTCGTTGAGTTGCGGAATCAGATGCTTAGATATATTGATCTGA GT
CDS |
1320 bp |
>Os06t0273700-01 Protein of unknown function DUF231, plant domain containing protein. ATGAAGCGCCTCTCCATCCGCGGCCTCCTCGCCGGGGCTCGCCGGACCCGCCACGCCGTT GCCGCCAAGGCCACCACGTCCGTCCCGGCTCTCGTCGCGCTCCTCTTCTTCTTCGCCGCC GCCACCTTCTCGGTCTTCTCCCTCGGCTCCTTCCGTTGGCCTGGCGCCGCCGATGATGGC GGTGCGGCTGCCTGCGACGCCGCGCTGGCGCGGGGGCGGGGCGAGTGGATGCGCGACGCC GGCGCGGCGCCGTACTACACCAACGCGACGTGCGGGTTCATCCAGAACTACCAGAACTGC ATGAAGCACGGGAGGCCCAGCATGGAGTTCTTGCGGTGGCGGTGGCGTCCCGGTGACGGC GGCGAGGGGTGCGAGCCGCTCGGGCCGTTCGACGCGGCGCGGTTCTTCCGGCTCGTGCGC GGGAGGTCGATGCTGTTCGTCGGCGACTCGCTGGCGAGCAGCCACGTGACGTCCCTCGTG TGCGCGCTGTCGCAGGTGGAGGCGCCGGCGAGGTCGCGCGACGCGGCGGCGGGGTTCGAG CACTGGCGCTTCCCGGCGCACGGCTTCGCCGTCGCCTACTTCTGGACGCCGTTCCAGGTC CGGTGGCGCCTGACGCGCGGCCCGCCGGAGGCGGTCGGTCCGGAACGGCAGGGCGAGGTG TTCGCCGGCCCGAGCGACCTCCACCTCGACGAGCCCGACGAGCGGTGGACGTCCGCCGCC AAGAGCCACGACTACGTCGTCCTCTCCGCGTCGCACTGGTTCGCGCGCCCCGCCGTGTAC TACCAGCACGGCCGCGTCGTCGGCTGCCACGACTGCGGCGACAGCAACGCCACCGCCACG GCCATTGTCAAGCAGCCAGAGCACGCGCAGCGGGCGGCGTTCCGCGCCGTGCTCGGGGCG CTGGCGCGGCTGGACGGGTTCAACGGCACGGCGATCCTGCGCACGGTGGCGCCGACGCAC TACGAGAACGGCGGGTGGTTCGACGGCGGGGAGTGCACCGCGACGCGGCCGGCCAGCGAG AGCGAGGACGGGGCGGCGCCGGAGATGGCGGCGACGGAGGCGGAGTTCTACCGGGCGCAG GTCGAGGAGTTCGCCGCGGCGGCGGCGGCGGCGGCGGCGAGGAACGGCGGCAAGCGGGCG CGGCTGAGGCTGATGGACGTGACGCGGATGATGCTGCTCCGGCCGGACGGGCACCCGGAC CGGCACGGGCATGGCGGCGGCGAGCACGACGGATTCGAGATCGACTGCCTGCACTGGTGC TTGCCCGGAGCGATCGACGTGTGGAACGACCTGCTGCTTCAGATAATCGCATCCTCATGA
Protein |
440 aa |
>Os06t0273700-01 Protein of unknown function DUF231, plant domain containing protein. MKRLSIRGLLAGARRTRHAVAAKATTSVPALVALLFFFAAATFSVFSLGSFRWPGAADDG GAAACDAALARGRGEWMRDAGAAPYYTNATCGFIQNYQNCMKHGRPSMEFLRWRWRPGDG GEGCEPLGPFDAARFFRLVRGRSMLFVGDSLASSHVTSLVCALSQVEAPARSRDAAAGFE HWRFPAHGFAVAYFWTPFQVRWRLTRGPPEAVGPERQGEVFAGPSDLHLDEPDERWTSAA KSHDYVVLSASHWFARPAVYYQHGRVVGCHDCGDSNATATAIVKQPEHAQRAAFRAVLGA LARLDGFNGTAILRTVAPTHYENGGWFDGGECTATRPASESEDGAAPEMAATEAEFYRAQ VEEFAAAAAAAAARNGGKRARLRLMDVTRMMLLRPDGHPDRHGHGGGEHDGFEIDCLHWC LPGAIDVWNDLLLQIIASS*
5'UTR
chr06:9253960..9254048 (+ strand) : 89 bp
CDS
chr06:9254049..9255368 (+ strand) : 1320 bp
3'UTR
chr06:9255369..9255521 (+ strand) : 153 bp
FASTA
>Os06t0273700-01 class=Sequence position=chr06:9253960..9255521 (+ strand) GTGTCAGTGG AGCTCGATCG ATCGGCGACC TCCCACTACT TACACGGCGA CATGGCGACG CCACCGGCGA GGCCTCGTCG GTAACCGTCA TGAAGCGCCT CTCCATCCGC GGCCTCCTCG CCGGGGCTCG CCGGACCCGC CACGCCGTTG CCGCCAAGGC CACCACGTCC GTCCCGGCTC TCGTCGCGCT CCTCTTCTTC TTCGCCGCCG CCACCTTCTC GGTCTTCTCC CTCGGCTCCT TCCGTTGGCC TGGCGCCGCC GATGATGGCG GTGCGGCTGC CTGCGACGCC GCGCTGGCGC GGGGGCGGGG CGAGTGGATG CGCGACGCCG GCGCGGCGCC GTACTACACC AACGCGACGT GCGGGTTCAT CCAGAACTAC CAGAACTGCA TGAAGCACGG GAGGCCCAGC ATGGAGTTCT TGCGGTGGCG GTGGCGTCCC GGTGACGGCG GCGAGGGGTG CGAGCCGCTC GGGCCGTTCG ACGCGGCGCG GTTCTTCCGG CTCGTGCGCG GGAGGTCGAT GCTGTTCGTC GGCGACTCGC TGGCGAGCAG CCACGTGACG TCCCTCGTGT GCGCGCTGTC GCAGGTGGAG GCGCCGGCGA GGTCGCGCGA CGCGGCGGCG GGGTTCGAGC ACTGGCGCTT CCCGGCGCAC GGCTTCGCCG TCGCCTACTT CTGGACGCCG TTCCAGGTCC GGTGGCGCCT GACGCGCGGC CCGCCGGAGG CGGTCGGTCC GGAACGGCAG GGCGAGGTGT TCGCCGGCCC GAGCGACCTC CACCTCGACG AGCCCGACGA GCGGTGGACG TCCGCCGCCA AGAGCCACGA CTACGTCGTC CTCTCCGCGT CGCACTGGTT CGCGCGCCCC GCCGTGTACT ACCAGCACGG CCGCGTCGTC GGCTGCCACG ACTGCGGCGA CAGCAACGCC ACCGCCACGG CCATTGTCAA GCAGCCAGAG CACGCGCAGC GGGCGGCGTT CCGCGCCGTG CTCGGGGCGC TGGCGCGGCT GGACGGGTTC AACGGCACGG CGATCCTGCG CACGGTGGCG CCGACGCACT ACGAGAACGG CGGGTGGTTC GACGGCGGGG AGTGCACCGC GACGCGGCCG GCCAGCGAGA GCGAGGACGG GGCGGCGCCG GAGATGGCGG CGACGGAGGC GGAGTTCTAC CGGGCGCAGG TCGAGGAGTT CGCCGCGGCG GCGGCGGCGG CGGCGGCGAG GAACGGCGGC AAGCGGGCGC GGCTGAGGCT GATGGACGTG ACGCGGATGA TGCTGCTCCG GCCGGACGGG CACCCGGACC GGCACGGGCA TGGCGGCGGC GAGCACGACG GATTCGAGAT CGACTGCCTG CACTGGTGCT TGCCCGGAGC GATCGACGTG TGGAACGACC TGCTGCTTCA GATAATCGCA TCCTCATGAC AACGCTACCT GACGTGACAC TCAGCAAAGC ACAGACAAAT ATGGAGCAAT GTAGATGAAA ATTTCCCTTG GATTTGCTTT TTTTTTTTTT TTTTTTTTTG TCTTTGCCTC GTTGAGTTGC GGAATCAGAT GCTTAGATAT ATTGATCTGA GT