Locus

Os06g0539500

Description

Similar to Non-specific lipid-transfer protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

OsLTP1.6, OsLtpI.6

Oryzabase Gene Name Synonym(s)

non-specific lipid transfer protein 1.6, lipid transfer protein 1.6, type 1 non-specific lipid transfer protein 6

Transcript Evidence

BT066221 (DDBJ)

Protein Evidence

B9FTM6 (UniProt)

Literature

Note

• Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.

Manual Curation

Gene Ontology (GO)

Biological Process: lipid transport (GO:0006869)

Molecular Function: lipid binding (GO:0008289)

Functional domain (InterPro)

Plant lipid transfer protein/Par allergen (IPR000528)

Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612)

Plant lipid transfer protein/hydrophobic protein, helical domain (IPR013770)

Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140)

Expression Databases

TENOR (Os06t0539500-00)

Others

Oryzabase (13515)

Transcript

377 bp

>Os06t0539500-00 Similar to Non-specific lipid-transfer protein.
ATGGGCAAGAACGCGAGCCGCCTCGCCGTCGCCGCCGTCGTCGTGTTCGCGCTGCTGCTG
TCGCTCCGGCAGCTGGAGGCGGCCGACGACGTCTCCGTGTCGTGCTCCGACGTGGTCGCC
GACGTGACGCCGTGCCTGGGGTTCCTGCAGGGAGACGACGACCACCCCTCCGGCGAGTGC
TGCGACGGCCTGTCCGGCCTGGTGGCCGCCGCGGCCACCACGGAGGACCGGCAGGCGGCG
TGCGAGTGCCTCAAGTCGGCCGTCTCCGGCCAGTTCACCGCCGTCGAGGCCGCGCCGGCG
AGGGACCTGCCGGCGGACTGCGGCCTCTCCCTGCCCTACACCTTCTCGCCGGACGTCGAC
TGCTCCCAGTAAGTACA

CDS

372 bp

>Os06t0539500-00 Similar to Non-specific lipid-transfer protein.
ATGGGCAAGAACGCGAGCCGCCTCGCCGTCGCCGCCGTCGTCGTGTTCGCGCTGCTGCTG
TCGCTCCGGCAGCTGGAGGCGGCCGACGACGTCTCCGTGTCGTGCTCCGACGTGGTCGCC
GACGTGACGCCGTGCCTGGGGTTCCTGCAGGGAGACGACGACCACCCCTCCGGCGAGTGC
TGCGACGGCCTGTCCGGCCTGGTGGCCGCCGCGGCCACCACGGAGGACCGGCAGGCGGCG
TGCGAGTGCCTCAAGTCGGCCGTCTCCGGCCAGTTCACCGCCGTCGAGGCCGCGCCGGCG
AGGGACCTGCCGGCGGACTGCGGCCTCTCCCTGCCCTACACCTTCTCGCCGGACGTCGAC
TGCTCCCAGTAA

Protein

124 aa

>Os06t0539500-00 Similar to Non-specific lipid-transfer protein.
MGKNASRLAVAAVVVFALLLSLRQLEAADDVSVSCSDVVADVTPCLGFLQGDDDHPSGEC
CDGLSGLVAAAATTEDRQAACECLKSAVSGQFTAVEAAPARDLPADCGLSLPYTFSPDVD
CSQ*

CDS

chr06:20257255..20257626 (- strand) : 372 bp

3'UTR

chr06:20257250..20257254 (- strand) : 5 bp

FASTA

>Os06t0539500-00 class=Sequence position=chr06:20257250..20257626 (- strand)
ATGGGCAAGA ACGCGAGCCG CCTCGCCGTC GCCGCCGTCG TCGTGTTCGC GCTGCTGCTG TCGCTCCGGC AGCTGGAGGC
GGCCGACGAC GTCTCCGTGT CGTGCTCCGA CGTGGTCGCC GACGTGACGC CGTGCCTGGG GTTCCTGCAG GGAGACGACG
ACCACCCCTC CGGCGAGTGC TGCGACGGCC TGTCCGGCCT GGTGGCCGCC GCGGCCACCA CGGAGGACCG GCAGGCGGCG
TGCGAGTGCC TCAAGTCGGC CGTCTCCGGC CAGTTCACCG CCGTCGAGGC CGCGCCGGCG AGGGACCTGC CGGCGGACTG
CGGCCTCTCC CTGCCCTACA CCTTCTCGCC GGACGTCGAC TGCTCCCAGT AAGTACA

Locus: Os06g0539500

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

Link to RiceXPro

Graph view ()

Locus: Os06g0539500

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

Link to RiceFREND

MR list ()

HyperTree ()