Os06t0552900-00

Locus

Os06g0552900

Description

Similar to SP3D.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

FTL12

CGSNL Gene Name

FLOWERING TIME LIKE GENE 12

Oryzabase Gene Symbol Synonym(s)

OsFTL12, FT-L11

Oryzabase Gene Name Synonym(s)

FT-like gene 12, FT-like gene 11

Transcript Evidence

CT836192 (DDBJ, Best hit)

Protein Evidence

A8WET3 (UniProt)

Literature

Note

Manual Curation

Functional domain (InterPro)

Phosphatidylethanolamine-binding, conserved site (IPR001858)

Phosphatidylethanolamine-binding protein PEBP (IPR008914)

Expression Databases

TENOR (Os06t0552900-00)

Others

Oryzabase (11233)

KEGG (Os06t0552900-00)

Transcript

879 bp

>Os06t0552900-00 Similar to SP3D.
AGCCATTGCAAGGCCTGTTAGCATTTGTAGAGCTAGCTAGCTTAGCTTCAGCTCACACCT
ACATATATCAGCTCTCACAGTCTCAAAACACATCATGGCAAATGACTCATTGACAAGGAG
CCATATAGTTGGAGATGTGTTAGACCAATTTTCAAACTCAGTGCCTCTAACTGTGATGTA
TGATGGGAGGCCTGTGTTTAATGGCAAGGAGTTCCGTTCCTCGGCAGTCTCGATGAAACC
TAGAGTTGAGATTGGTGGCGATGATTTTCGATTTGCCTATACCCTAGTTATGGTGGATCC
TGATGCTCCTAATCCCAGCAACCCAACCTTGAGGGAATACCTGCACTGGATGGTGACTGA
TATCCCATCATCGACGGACGATAGCTTTGGGCGGGAGATCGTAACATACGAAAGCCCAAG
CCCCACCATGGGCATCCACCGCATCGTGATGGTGTTGTATCAGCAGCTTGGGCGCGGCAC
GGTGTTCGCGCCGCAGGTGCGTCAGAACTTCAACCTGCGCAGCTTCGCGCGCCGTTTCAA
CCTCGGCAAGCCGGTGGCCGCCATGTACTTCAACTGCCAGCGCCCGACAGGCACAGGTGG
GAGGAGGCCAACCTGATCTGATCAATATCGATCGATCTTCGATCTTCTAGCTCTTGTACA
TGTTGAGTGTTGACCAATATAATGGCCACTCATGCATATATGCAGTGTGTCTAGCCAGCT
GCATGCAACTTTGTCTACGTGCTTATATAATTAAACAAATGCATATATAGCCGGCCGTAT
CATAAAGTTCCTAGCTATAAAAGCTATAGAATAAATGTCGCCCCACTTGGTCAGTTGGTG
TACATGACGGCTCCTAAGTGTGCTATCATGAATATGCTA

CDS

522 bp

>Os06t0552900-00 Similar to SP3D.
ATGGCAAATGACTCATTGACAAGGAGCCATATAGTTGGAGATGTGTTAGACCAATTTTCA
AACTCAGTGCCTCTAACTGTGATGTATGATGGGAGGCCTGTGTTTAATGGCAAGGAGTTC
CGTTCCTCGGCAGTCTCGATGAAACCTAGAGTTGAGATTGGTGGCGATGATTTTCGATTT
GCCTATACCCTAGTTATGGTGGATCCTGATGCTCCTAATCCCAGCAACCCAACCTTGAGG
GAATACCTGCACTGGATGGTGACTGATATCCCATCATCGACGGACGATAGCTTTGGGCGG
GAGATCGTAACATACGAAAGCCCAAGCCCCACCATGGGCATCCACCGCATCGTGATGGTG
TTGTATCAGCAGCTTGGGCGCGGCACGGTGTTCGCGCCGCAGGTGCGTCAGAACTTCAAC
CTGCGCAGCTTCGCGCGCCGTTTCAACCTCGGCAAGCCGGTGGCCGCCATGTACTTCAAC
TGCCAGCGCCCGACAGGCACAGGTGGGAGGAGGCCAACCTGA

Protein

174 aa

>Os06t0552900-00 Similar to SP3D.
MANDSLTRSHIVGDVLDQFSNSVPLTVMYDGRPVFNGKEFRSSAVSMKPRVEIGGDDFRF
AYTLVMVDPDAPNPSNPTLREYLHWMVTDIPSSTDDSFGREIVTYESPSPTMGIHRIVMV
LYQQLGRGTVFAPQVRQNFNLRSFARRFNLGKPVAAMYFNCQRPTGTGGRRPT*

5'UTR

chr06:20974159..20974252 (- strand) : 94 bp

CDS

chr06:20973967..20974158 (- strand) : 192 bp

chr06:20973529..20973590 (- strand) : 62 bp

chr06:20973401..20973441 (- strand) : 41 bp

chr06:20971969..20972195 (- strand) : 227 bp

3'UTR

chr06:20971884..20971968 (- strand) : 85 bp

chr06:20971660..20971837 (- strand) : 178 bp

FASTA

>Os06t0552900-00 class=Sequence position=chr06:20971660..20974252 (- strand)
AGCCATTGCA AGGCCTGTTA GCATTTGTAG AGCTAGCTAG CTTAGCTTCA GCTCACACCT ACATATATCA GCTCTCACAG
TCTCAAAACA CATCATGGCA AATGACTCAT TGACAAGGAG CCATATAGTT GGAGATGTGT TAGACCAATT TTCAAACTCA
GTGCCTCTAA CTGTGATGTA TGATGGGAGG CCTGTGTTTA ATGGCAAGGA GTTCCGTTCC TCGGCAGTCT CGATGAAACC
TAGAGTTGAG ATTGGTGGCG ATGATTTTCG ATTTGCCTAT ACCCTAGTAA GCCCATTAAA TTAATTACTT CATACCCGAT
CCAAAAGAGT CATATTGATA GATGCATGGG TAGGCCATGC ATATATATAC ATTGTCCATG GTGTTGGCAA TGCACTTTTT
CTCTTAATCT TAGGAGCTCT TGAGGTTGGA CAGACCAAGA AAACAACAGC TTCACTAGCC ATGATAAACC TTGGCCTAGC
TCTTGTTGCA ATGTGTTTGC CTCAACTAGA TGGTGCTCTC TGCCAGCTGG TTAAGCTAAT TGAGCAATAT TACTAACCTA
AATTAATTAG GCATTTTCAG CCCAGACCAA AAAAATACTC AGGTTTATTT TAATCCCTTT CATGTTGACC ATGTGTTTGT
GTGAATTGTT AATAAAAATT AGGTTATGGT GGATCCTGAT GCTCCTAATC CCAGCAACCC AACCTTGAGG GAATACCTGC
ACTGGTAAGC TATGCTCTTG CAATTGTTGT GATTTCTATC ATATGTCTCA CATTGATTAG TGATCTAACT ACCTACTTTT
CAATATGACA GGATGGTGAC TGATATCCCA TCATCGACGG ACGATAGCTT TGGTGAGTAT ATTCATATTG TATCCAGGGT
CTCAAGCATA CACAACTACT CTGCTGCATT AGCTTTTACT TGCTGTCTTC AAATGCTTGT CACTAGCTAG CAAATACTGA
TCATCGATCC TTCAACTTTG ATTACTTTTT TTAAAAAAAA GTATAAATAC TTAAAAATAT TTCATATTAA CAAAGTATAC
ATCCTAATTA AATGCATATA GTCATGAAAC TTTTGTGCAT CATGATCCAA CAATGAAAAA AAAATTGATG TCCAAAGTTA
AAATTCATTG GTTTCAAATA ATGAACAGTT ATATATTTGA AACCCGAGGG AGTCACAATA TTGGAGTGTT CCTTCATATG
GCCAGTACAA GTTTGGAAAA TGGTTAAGTT GATAGATAAT TAAGTAGGTA TGTTTAACCA AAATGTTGCA TGCTTGGTGT
GATTGATTTA AAATTCATAC ATCACAAATC CGGTTTCTTT TGTGCTGGTC CAAAATTCAG AAATATCAAG TAGGAGTATA
TGATTGTAAC TTTTGTTGTT ATATTTGGAA AAAAAATTGC AGTACAACTA CAAAGTAGAT CTAATTAAGC CAGTTACTCG
CAAGGTGCAT TTCTATTGAT ATTGAAATAG TGCAAAATTG TTCTACAAAA CTGCTGTCTG TAAAATTTCA ACTACAGGTT
CAATTCGTCT CAATGACTCC AAAATAAAAT TCTTGCAAAC AGTAGGATCG AAGAAAAATA AAATAAAAAC TTGCTAGACA
CAACAAATCT TATTCTCTCC CTTCTTTTCA CACTTGATGT CAAATAAGTT GGACGTAAAA TCTTACAGAA TTATTTTTCT
CCTCAAACTA GCTTGGTTCA TATTTTTAAA AAAGAACATG ATTTATAGCA CCGTTCAACA TAAATATGGT ATTTAGTTGT
ATTCCCCCCT TATACCATAC TAAGTTCGAA TTAATAATCT GAACATGAAT AAAAACAGTA GAAATATATA CTATGTTGCA
TCTCTGCATA TGGTATAGCA CATACACCGG CGGATCCACC GCCCAGCGAC CCGATCGAGC AGTCACCCGG GCTTATCGGT
GGAAGATCCT TTTGAAATTC TATGCAATTT AACAAATTGA AATTGAACAT TATAAGCAAA TGTTAGCTAT AATTAAGTAT
GTCCAAGGCT TTAAAATTTT ACTGAGCACA TATCATATAT AAATTAAATT AATGCAGGGC GGGAGATCGT AACATACGAA
AGCCCAAGCC CCACCATGGG CATCCACCGC ATCGTGATGG TGTTGTATCA GCAGCTTGGG CGCGGCACGG TGTTCGCGCC
GCAGGTGCGT CAGAACTTCA ACCTGCGCAG CTTCGCGCGC CGTTTCAACC TCGGCAAGCC GGTGGCCGCC ATGTACTTCA
ACTGCCAGCG CCCGACAGGC ACAGGTGGGA GGAGGCCAAC CTGATCTGAT CAATATCGAT CGATCTTCGA TCTTCTAGCT
CTTGTACATG TTGAGTGTTG ACCAATATAA TGGCCACTCA TGCATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATGCAGT GTGTCTAGCC AGCTGCATGC AACTTTGTCT ACGTGCTTAT ATAATTAAAC AAATGCATAT
ATAGCCGGCC GTATCATAAA GTTCCTAGCT ATAAAAGCTA TAGAATAAAT GTCGCCCCAC TTGGTCAGTT GGTGTACATG
ACGGCTCCTA AGTGTGCTAT CATGAATATG CTA

Locus: Os06g0552900

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Locus: Os06g0552900

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