Locus
Os06g0554800
Description
Similar to Isoform 2 of Pleiotropic drug resistance protein 12.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
PDR12
CGSNL Gene Name
PLEIOTROPIC DRUG RESISTANCE 12
Oryzabase Gene Symbol Synonym(s)
OsABCG42, OsPDR12, OsABCG42_1, OsABCG42_2
Oryzabase Gene Name Synonym(s)
ABC transporter superfamily ABCG subgroup member 42, pleiotropic drug resistance 12
Transcript Evidence
AK058448 (DDBJ, Best hit)
Protein Evidence
B9FTR2 (UniProt)
Literature
Note
Manual Curation
Gene Ontology (GO)
Cellular Component: membrane (GO:0016020)
Functional domain (InterPro)
ABC-2 type transporter (IPR013525)
Full-length cDNA
001-015-G08 (Online Clone Ordering)
Expression Databases
TENOR (Os06t0554800-02)
RiceXPro (AK058448)
Others
Oryzabase (12016)
KEGG (Os06t0554800-02)
Transcript |
1368 bp |
>Os06t0554800-02 Similar to Isoform 2 of Pleiotropic drug resistance protein 12. AAAGAGGAGGGCAGGTGATATACTCTGGGCAATTGGGTCGTAATTCCCAGAAAATGATTG AATATTTCGAGGCAATTCCTGGTGTGCCTAAAATCAAAGATAAGTACAATCCAGCTACAT GGATGCTTGAGGTCAGTTCAGTTGCTGCGGAAGTACGCTTAAATATGGACTTTGCTGAGT ACTATAAGACATCAGACCTGTACAAGCAAAACAAGGTATTGGTGAATCAGCTAAGTCAAC CAGAGCCAGGAACATCAGATCTGCATTTTCCTACAAAATACTCTCAATCCACCATAGGGC AATTTAGGGCCTGCCTCTGGAAGCAATGGCTGACCTATTGGCGCAGCCCAGATTACAATC TTGTTAGATTTTCCTTCACTCTGTTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGA TCGGCACCAAGATGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAG CAGTGATGTTTATCGGTATCAACAATTGTGCGACTGTGCAGCCAATCGTGTCGATTGAGA GAACAGTTTTCTACCGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCCTATGCCATTG CTCAGGTTGTCATGGAGATACCCTATGTGTTCGTCCAAACTGCATATTATACCCTCATTG TTTATGCCATGATGAGCTTCCAGTGGACAGCAGCCAAGTTCTTCTGGTTCTTCTTCGTCT CCTACTTCTCATTTCTCTACTTCACCTACTATGGTATGATGACGGTGGCAATCTCACCAA ACCATGAGGTTGCAGCCATCTTTGCCGCGGCGTTCTATTCCTTGTTCAACCTATTCTCAG GATTCTTCATTCCGAGACCAAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCC CATTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCA TCTCAGTCCCTGGCCAATCCAACCAGACAATCAGCTACTATGTTACTCATCATTTTGGAT ATCACAGGAAATTTATGCCAGTTGTTGCGCCGGTGCTCGTGCTCTTCGCTGTGTTTTTCG CGTTCATGTATGCCATTTGCATCAAGAAGTTGAACTTCCAACATCGATAGGGGCATTGAA ACAACAGGCAAAATCTGGTTGGAAACTTTTTTTTGGTTTTGAACCAAATCTTCTTTTGTC CTTTCCCCACAGATAATATCTTCTTTTATCCTCACATTTTTGTGGTCTATATATGCCATG TAAATATGCTGGTAGGTTTTCTGTATTCCATACATCGCCAAATGTGGCGAGGTTTCATAT GACCTTTTAGCTTTGGAAATGTAAACTTTATAAGAGCATTGTTGTCAG
CDS |
1128 bp |
>Os06t0554800-02 Similar to Isoform 2 of Pleiotropic drug resistance protein 12. AGAGGAGGGCAGGTGATATACTCTGGGCAATTGGGTCGTAATTCCCAGAAAATGATTGAA TATTTCGAGGCAATTCCTGGTGTGCCTAAAATCAAAGATAAGTACAATCCAGCTACATGG ATGCTTGAGGTCAGTTCAGTTGCTGCGGAAGTACGCTTAAATATGGACTTTGCTGAGTAC TATAAGACATCAGACCTGTACAAGCAAAACAAGGTATTGGTGAATCAGCTAAGTCAACCA GAGCCAGGAACATCAGATCTGCATTTTCCTACAAAATACTCTCAATCCACCATAGGGCAA TTTAGGGCCTGCCTCTGGAAGCAATGGCTGACCTATTGGCGCAGCCCAGATTACAATCTT GTTAGATTTTCCTTCACTCTGTTCACAGCCTTGCTACTCGGCACCATCTTTTGGAAGATC GGCACCAAGATGGGAAATGCCAATTCTCTTAGAATGGTCATTGGAGCAATGTATACAGCA GTGATGTTTATCGGTATCAACAATTGTGCGACTGTGCAGCCAATCGTGTCGATTGAGAGA ACAGTTTTCTACCGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCCTATGCCATTGCT CAGGTTGTCATGGAGATACCCTATGTGTTCGTCCAAACTGCATATTATACCCTCATTGTT TATGCCATGATGAGCTTCCAGTGGACAGCAGCCAAGTTCTTCTGGTTCTTCTTCGTCTCC TACTTCTCATTTCTCTACTTCACCTACTATGGTATGATGACGGTGGCAATCTCACCAAAC CATGAGGTTGCAGCCATCTTTGCCGCGGCGTTCTATTCCTTGTTCAACCTATTCTCAGGA TTCTTCATTCCGAGACCAAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCA TTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCATC TCAGTCCCTGGCCAATCCAACCAGACAATCAGCTACTATGTTACTCATCATTTTGGATAT CACAGGAAATTTATGCCAGTTGTTGCGCCGGTGCTCGTGCTCTTCGCTGTGTTTTTCGCG TTCATGTATGCCATTTGCATCAAGAAGTTGAACTTCCAACATCGATAG
Protein |
375 aa |
>Os06t0554800-02 Similar to Isoform 2 of Pleiotropic drug resistance protein 12. RGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEY YKTSDLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNL VRFSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMFIGINNCATVQPIVSIER TVFYRERAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVS YFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCP LAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFA FMYAICIKKLNFQHR*
5'UTR
chr06:21115094..21115095 (- strand) : 2 bp
CDS
chr06:21115025..21115093 (- strand) : 69 bp
chr06:21114784..21114917 (- strand) : 134 bp
chr06:21114448..21114675 (- strand) : 228 bp
chr06:21114194..21114365 (- strand) : 172 bp
chr06:21113860..21114114 (- strand) : 255 bp
chr06:21113502..21113771 (- strand) : 270 bp
3'UTR
chr06:21113264..21113501 (- strand) : 238 bp
FASTA
>Os06t0554800-02 class=Sequence position=chr06:21113264..21115095 (- strand) AAAGAGGAGG GCAGGTGATA TACTCTGGGC AATTGGGTCG TAATTCCCAG AAAATGATTG AATATTTCGA GGTACAGATA GTTTCAGATG GTGGTTAACT TTTGCTAAGT GGAAGGTGTG TTATGAATAA CTAGAATAAA TTTACTTTTC TAACCAATCT GCTATTTAAT ATTACCAGGC AATTCCTGGT GTGCCTAAAA TCAAAGATAA GTACAATCCA GCTACATGGA TGCTTGAGGT CAGTTCAGTT GCTGCGGAAG TACGCTTAAA TATGGACTTT GCTGAGTACT ATAAGACATC AGACCTGTAC AAGTAAGCGA AACATTTTTT TTTCTTCTAC TTTTAAACTC TTATCTTTCT TCTTAAAGTT TTTAGTTGTT GTGTGTCAAT TCTCATGGAA TAGATGGGCC GTGTTTTCAG GCAAAACAAG GTATTGGTGA ATCAGCTAAG TCAACCAGAG CCAGGAACAT CAGATCTGCA TTTTCCTACA AAATACTCTC AATCCACCAT AGGGCAATTT AGGGCCTGCC TCTGGAAGCA ATGGCTGACC TATTGGCGCA GCCCAGATTA CAATCTTGTT AGATTTTCCT TCACTCTGTT CACAGCCTTG CTACTCGGCA CCATCTTTTG GAAGATCGGC ACCAAGATGT AAATACTTCC TCTCTTTTTC ATCTTTGACT CCTTAATCTT AATGTTCCAG TATCTGACGT TTTTGGTGTC TTATGATCAG GGGAAATGCC AATTCTCTTA GAATGGTCAT TGGAGCAATG TATACAGCAG TGATGTTTAT CGGTATCAAC AATTGTGCGA CTGTGCAGCC AATCGTGTCG ATTGAGAGAA CAGTTTTCTA CCGAGAGAGG GCTGCTGGGA TGTACTCTGC TATGCCCTAT GCCATTGCTC AGGTAACTTA TGGTGGTAGC TAAGGCAGTT AAGGTATAAT TTGTTTCCAG GAGTTGCTCA ACTCTTGATA ATTTGTTGTA GGTTGTCATG GAGATACCCT ATGTGTTCGT CCAAACTGCA TATTATACCC TCATTGTTTA TGCCATGATG AGCTTCCAGT GGACAGCAGC CAAGTTCTTC TGGTTCTTCT TCGTCTCCTA CTTCTCATTT CTCTACTTCA CCTACTATGG TATGATGACG GTGGCAATCT CACCAAACCA TGAGGTTGCA GCCATCTTTG CCGCGGCGTT CTATTCCTTG TTCAACCTAT TCTCAGGATT CTTCATTCCG AGACCAGTGA GTTTTCTTGG ATCAAACCGT TTCTTTGAAC TTTTTATTCT TCTTGGAAGA TCAAAGTAAT GGTGTTATTC ATGTTTTATT TCAGAGGATT CCCAAATGGT GGATCTGGTA CTACTGGCTT TGCCCATTGG CATGGACAGT GTATGGGCTC ATAGTGACAC AGTATGGAGA CCTAGAACAA ATCATCTCAG TCCCTGGCCA ATCCAACCAG ACAATCAGCT ACTATGTTAC TCATCATTTT GGATATCACA GGAAATTTAT GCCAGTTGTT GCGCCGGTGC TCGTGCTCTT CGCTGTGTTT TTCGCGTTCA TGTATGCCAT TTGCATCAAG AAGTTGAACT TCCAACATCG ATAGGGGCAT TGAAACAACA GGCAAAATCT GGTTGGAAAC TTTTTTTTGG TTTTGAACCA AATCTTCTTT TGTCCTTTCC CCACAGATAA TATCTTCTTT TATCCTCACA TTTTTGTGGT CTATATATGC CATGTAAATA TGCTGGTAGG TTTTCTGTAT TCCATACATC GCCAAATGTG GCGAGGTTTC ATATGACCTT TTAGCTTTGG AAATGTAAAC TTTATAAGAG CATTGTTGTC AG
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