Os06t0571800-01

Locus

Os06g0571800

Description

Similar to GATA transcription factor 20.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

GATA16

CGSNL Gene Name

GATA TRANSCRIPTION FACTOR 16

Oryzabase Gene Symbol Synonym(s)

OsGATA16, OsGNC, GNC

Oryzabase Gene Name Synonym(s)

GATA transcription factor 16, GATA factor 16, "GATA, NITRATE-INDUCIBLE, CARBON-METABOLISM INVOLVED"

Transcript Evidence

AK068715 (DDBJ, Best hit)

Protein Evidence

B6SS40 (UniProt)

Literature

Note

Manual Curation

Full-length cDNA

J013168M08 (Online Clone Ordering)

Expression Databases

TENOR (Os06t0571800-01)

RiceXPro (AK068715)

Others

Oryzabase (20499)

KEGG (Os06t0571800-01)

Transcript

983 bp

>Os06t0571800-01 Similar to GATA transcription factor 20.
AATCGTGCTGGACCTCGCAAAATTGCCCCTCCAACCGCATCAACACTCGTCGCGCGAAGC
GTACCATCGTCTCTCTCATCTTCCTCGCGGTCTCATCCTGATCGATCTCTGCGAGTTTAT
CCAATATCTGTACTCGCAAACTAGCTAGAGAGATCTAGTTAGTAGCTAGGCAGTTGCTGC
CTCTCATGTCTACCATCTACATGAGTCAGCTCTCAGCTGCTCTCCCTCTCATGGAGGGGG
AGCACCACCATCACCACCAGGATCATCACCAAGGCCACTTCCAAGCCTTCTCCCTGCAGC
CTAAGGATCCCCCAGTCTTATTCCCCTTTGTGATCAGTAGAAGAAGCAGCAGCAGCAGCC
CTAGCGACAGCACCACTCTAAGCTATGGTTCAGACCATCACTTGACACAGCAGCAGCAGC
TGGAGCAAGACCCATGCCGCCGCCACCGCCTCCTGCAGCTTCCGGCCGTCACCGGTGGCT
CCCGGCTTCGCGGCGGCGGTGCAGGACGAGATCACTGACGCCGCCATGCTGCTCATGACG
CTGTCCTGCGGGCTTGTCCGGAGCTGAGAAAGAAAAGCTATACTTCATCTCTGCATGCAT
CCATCGATCGATCGATTGGCACCAAGCTAGAGAGACCAATCGATGGAGATGGAGAGAGGT
GCAGGCTTTTTGCAGCTAGTGCGTTAGCCTGTTCTTGCTCGCTCGATCGATCGTACACTG
CCCCCCAGTTGGAATGTCTCTTGGCGTCTTGTTTCCTGTTCGAGTCTTGTGATCTCTGTT
ACTTTGTGCACTGTACTAGAGAGTGAGAGAGAGAGTGAGGTAGAAACATCAAGAGGAGAT
TAGAGGAGAAAGAATAATTAAGAGAAAAGTGTGAGCTAGCTAGGTAAGATTTACTGTACT
GTGAGTTCAATTTGGAGTAAGCTTTTTTGGGCTGCTTCACGGCTAATTATGCCACTGGCT
GCTATATATGTATGTTTGTTCTT

CDS

333 bp

>Os06t0571800-01 Similar to GATA transcription factor 20.
ATGTCTACCATCTACATGAGTCAGCTCTCAGCTGCTCTCCCTCTCATGGAGGGGGAGCAC
CACCATCACCACCAGGATCATCACCAAGGCCACTTCCAAGCCTTCTCCCTGCAGCCTAAG
GATCCCCCAGTCTTATTCCCCTTTGTGATCAGTAGAAGAAGCAGCAGCAGCAGCCCTAGC
GACAGCACCACTCTAAGCTATGGTTCAGACCATCACTTGACACAGCAGCAGCAGCTGGAG
CAAGACCCATGCCGCCGCCACCGCCTCCTGCAGCTTCCGGCCGTCACCGGTGGCTCCCGG
CTTCGCGGCGGCGGTGCAGGACGAGATCACTGA

Protein

110 aa

>Os06t0571800-01 Similar to GATA transcription factor 20.
MSTIYMSQLSAALPLMEGEHHHHHQDHHQGHFQAFSLQPKDPPVLFPFVISRRSSSSSPS
DSTTLSYGSDHHLTQQQQLEQDPCRRHRLLQLPAVTGGSRLRGGGAGRDH*

5'UTR

chr06:22155054..22155238 (+ strand) : 185 bp

CDS

chr06:22155239..22155469 (+ strand) : 231 bp

chr06:22156488..22156589 (+ strand) : 102 bp

3'UTR

chr06:22156590..22157054 (+ strand) : 465 bp

FASTA

>Os06t0571800-01 class=Sequence position=chr06:22155054..22157054 (+ strand)
AATCGTGCTG GACCTCGCAA AATTGCCCCT CCAACCGCAT CAACACTCGT CGCGCGAAGC GTACCATCGT CTCTCTCATC
TTCCTCGCGG TCTCATCCTG ATCGATCTCT GCGAGTTTAT CCAATATCTG TACTCGCAAA CTAGCTAGAG AGATCTAGTT
AGTAGCTAGG CAGTTGCTGC CTCTCATGTC TACCATCTAC ATGAGTCAGC TCTCAGCTGC TCTCCCTCTC ATGGAGGGGG
AGCACCACCA TCACCACCAG GATCATCACC AAGGCCACTT CCAAGCCTTC TCCCTGCAGC CTAAGGATCC CCCAGTCTTA
TTCCCCTTTG TGATCAGTAG AAGAAGCAGC AGCAGCAGCC CTAGCGACAG CACCACTCTA AGCTATGGTT CAGACCATCA
CTTGACACAG CAGCAGCAGC ATCAGCATCA AGCCATGCTT GAGCCCCAAA ATGTAAGCTC TACCGTCTAA TCTGTACCTA
TATGTAGCTA TAGCTAGGGG TTCAAGTCTT AATCATGTGT TGATTTGTCA AATTGTTTGT TTGACATGTT AATTCTTCTG
CTGTTAAATC ATCAGATGAT TGGAGGATCA TCCGCTGGCA TCTTTGCGAC GCCGTTCCCG ACCGTCAAGA GCATCCGCGA
CGACATGATC GAGCGGTCGC AGTTCGATCC ATACGATACC GAGAAGCTGC AGGCGAGCTG CGGGTTAGCC AAGGTCGTCG
CCGGCGGCAA GTGGAGCGCG GTGCCAGCGG CCAAGATGAA GATCACGAGG AAGATGGGTG AGCCGTCGTC CGGTGTCACT
GGcggggctg cgacgacggt ggcgccgaag aagccgagga ggaggccggc gcaggcgtac gaggatcacg gccatggcgg
cgcCATGGGC CAAGCTTTTG GCGTGATTAG GGTGTGCTCC GACTGCAACA CCACCAAGAC TCCCTTGTGG AGGAGTGGCC
CGTGCGGCCC CAAGGTACTT ATATACCTCT TCGTCTCACT CATGGCCATG GCGCCATGGA TGCTTTTGCT TGCGTATACT
GCAGCTGTGT CTCATTTCAT GGCTGTTCCA TGGTGCAGTC GCTTTGCAAC GCGTGCGGCA TCAGGCAGAG GAAGGCGCGG
CGGGCGATGA TGGCCTCCGG ACTACCAGCG TCCCCCAACG CCGCCGGCCC CAAGGCGGCC GCACATAGCG GCGCCGCTGC
GGTGGCGGCT GCGCAGCCGA AGGTGAAGAA GGAGAAGAGA GCCGACGTCG ACCGGTCGTC GCTGCCGTTC AAGAAACGGT
GCAAGGTCGT CCAGGTCGAG GATCATCAAA CGCTGCCCGC CGCCACAAAC GCAGCCGCCG CAGCTGCCAT GGAGGAGACG
GCCGAGTCCG CCACCGTCGC CCCGCCCCCG GCGCCGACGA CGAGGGGTGG TACTCTCGTC GACAGCATCG GGCTCAGCTG
GAGCAAGACC CATGCCGCCG CCACCGCCTC CTGCAGCTTC CGGCCGTCAC CGGTGGCTCC CGGCTTCGCG GCGGCGGTGC
AGGACGAGAT CACTGACGCC GCCATGCTGC TCATGACGCT GTCCTGCGGG CTTGTCCGGA GCTGAGAAAG AAAAGCTATA
CTTCATCTCT GCATGCATCC ATCGATCGAT CGATTGGCAC CAAGCTAGAG AGACCAATCG ATGGAGATGG AGAGAGGTGC
AGGCTTTTTG CAGCTAGTGC GTTAGCCTGT TCTTGCTCGC TCGATCGATC GTACACTGCC CCCCAGTTGG AATGTCTCTT
GGCGTCTTGT TTCCTGTTCG AGTCTTGTGA TCTCTGTTAC TTTGTGCACT GTACTAGAGA GTGAGAGAGA GAGTGAGGTA
GAAACATCAA GAGGAGATTA GAGGAGAAAG AATAATTAAG AGAAAAGTGT GAGCTAGCTA GGTAAGATTT ACTGTACTGT
GAGTTCAATT TGGAGTAAGC TTTTTTGGGC TGCTTCACGG CTAATTATGC CACTGGCTGC TATATATGTA TGTTTGTTCT
T

Locus: Os06g0571800

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Locus: Os06g0571800

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