Os07t0694400-01

Locus

Os07g0694400

Description

Glycosyl transferase, family 43 protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C

Oryzabase Gene Name Synonym(s)

IRREGULAR XYLEM 9, glycosyltransferase family GT43 member C

Transcript Evidence

AK060667 (DDBJ, Best hit)

Protein Evidence

Q6Z3Y6 (UniProt)

Literature

Note

Manual Curation

Gene Ontology (GO)

Cellular Component: membrane (GO:0016020)

Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018)

Functional domain (InterPro)

Glycosyl transferase, family 43 (IPR005027)

Full-length cDNA

001-028-E01 (Online Clone Ordering)

Expression Databases

TENOR (Os07t0694400-01)

RiceXPro (AK060667)

Others

Oryzabase (11758)

KEGG (Os07t0694400-01)

Transcript

1191 bp

>Os07t0694400-01 Glycosyl transferase, family 43 protein.
CAGATCAGATCGATCCGGGCAGGCGGGCAGCATGGCGTCGGCAGGTGGCTGCAAGAAGAA
GACGGGAAATAGTCGTAGTAGGAGCCCTCGTAGCCCGGTGGTGCTGCGGAGGGCGATGCT
GCATTCGTCCCTCTGCTTCCTGGTCGGCCTCCTTGCCGGCCTCGCCGCCCCCTCCGACTG
GCCCGCTGCCGCCGGCGCCGCCGTCTTCCTCCGCACGCTCCGTGCCAGCAATGTCATCTT
CAGTCGCAGTAGCAATAGGCCGCAGCAGCCGCAGCTGGTGGTAGTGGTCACCACCACCGA
GCAGTCCGACGACTCCGAGCGGCGCGCCGCCGGGCTGACGCGCACGGCGCACGCGCTGCG
GCTGGTGTCGCCGCCGCTTCTCTGGCTGGTGGTGGAGGAGGCCCCCGCGGAGAAGCACGC
GGCGCCGCCCACGGCGCGGCTGCTGCGGCGCACGGGGGTGGTGCACCGCCACCTCCTCAT
GAAACAAGGAGATGATGATTTTAGCATGCAGATATCGATGAGGAGGGAGCAGCAGAGGAA
CGTGGCTCTGCGCCACATCGAGGACCACCGCATCGCCGGCGTCGTGCTCTTCGGGGGCCT
CGCCGACATCTACGACCTCCGCCTCCTCCACCACCTCAGGGACATCAGGACATTTGGTGC
GTGGCCCGTGGCGACAGTGTCGGCGTACGAGCGAAAGGTGATGGTGCAAGGCCCACTCTG
CATCAACACATCCTCCTCGTCGGTGATCACCCGCGGCTGGTTCGATATGGACATGGACAT
GGCGGCCGGCGGCGAGCGGCGAGCGGCCGCTGACCGGCCGCCTCCGGAGACGTTAATGGA
AGTGGGCGGGTTCGCGTTCAGCAGCTGGATGCTGTGGGACCCGCACAGGTGGGACCGCTT
CCCCCTCTCCGACCCCGACGCCTCGCAGGAATCAGTGAAGTTCGTGCAGCGGGTGGCGGT
GGAGGAATACAACCAGTCGACGACGAGGGGGATGCCGGACTCCGATTGCTCCCAAATCAT
GCTCTGGCGCATCCAAACTACGCTCTAGGCTCTAGCTAGCTTAATTTCATTCTTCTTCCT
TAATCATCGATCGTCAATCTCCAAAACCCACACTCCTACTCCTATCTAAGACAAATACCT
GCATATAAATATATACACACGTATACGTGGTGTGTTCACGTACGGTTAATT

CDS

1017 bp

>Os07t0694400-01 Glycosyl transferase, family 43 protein.
ATGGCGTCGGCAGGTGGCTGCAAGAAGAAGACGGGAAATAGTCGTAGTAGGAGCCCTCGT
AGCCCGGTGGTGCTGCGGAGGGCGATGCTGCATTCGTCCCTCTGCTTCCTGGTCGGCCTC
CTTGCCGGCCTCGCCGCCCCCTCCGACTGGCCCGCTGCCGCCGGCGCCGCCGTCTTCCTC
CGCACGCTCCGTGCCAGCAATGTCATCTTCAGTCGCAGTAGCAATAGGCCGCAGCAGCCG
CAGCTGGTGGTAGTGGTCACCACCACCGAGCAGTCCGACGACTCCGAGCGGCGCGCCGCC
GGGCTGACGCGCACGGCGCACGCGCTGCGGCTGGTGTCGCCGCCGCTTCTCTGGCTGGTG
GTGGAGGAGGCCCCCGCGGAGAAGCACGCGGCGCCGCCCACGGCGCGGCTGCTGCGGCGC
ACGGGGGTGGTGCACCGCCACCTCCTCATGAAACAAGGAGATGATGATTTTAGCATGCAG
ATATCGATGAGGAGGGAGCAGCAGAGGAACGTGGCTCTGCGCCACATCGAGGACCACCGC
ATCGCCGGCGTCGTGCTCTTCGGGGGCCTCGCCGACATCTACGACCTCCGCCTCCTCCAC
CACCTCAGGGACATCAGGACATTTGGTGCGTGGCCCGTGGCGACAGTGTCGGCGTACGAG
CGAAAGGTGATGGTGCAAGGCCCACTCTGCATCAACACATCCTCCTCGTCGGTGATCACC
CGCGGCTGGTTCGATATGGACATGGACATGGCGGCCGGCGGCGAGCGGCGAGCGGCCGCT
GACCGGCCGCCTCCGGAGACGTTAATGGAAGTGGGCGGGTTCGCGTTCAGCAGCTGGATG
CTGTGGGACCCGCACAGGTGGGACCGCTTCCCCCTCTCCGACCCCGACGCCTCGCAGGAA
TCAGTGAAGTTCGTGCAGCGGGTGGCGGTGGAGGAATACAACCAGTCGACGACGAGGGGG
ATGCCGGACTCCGATTGCTCCCAAATCATGCTCTGGCGCATCCAAACTACGCTCTAG

Protein

339 aa

>Os07t0694400-01 Glycosyl transferase, family 43 protein.
MASAGGCKKKTGNSRSRSPRSPVVLRRAMLHSSLCFLVGLLAGLAAPSDWPAAAGAAVFL
RTLRASNVIFSRSSNRPQQPQLVVVVTTTEQSDDSERRAAGLTRTAHALRLVSPPLLWLV
VEEAPAEKHAAPPTARLLRRTGVVHRHLLMKQGDDDFSMQISMRREQQRNVALRHIEDHR
IAGVVLFGGLADIYDLRLLHHLRDIRTFGAWPVATVSAYERKVMVQGPLCINTSSSSVIT
RGWFDMDMDMAAGGERRAAADRPPPETLMEVGGFAFSSWMLWDPHRWDRFPLSDPDASQE
SVKFVQRVAVEEYNQSTTRGMPDSDCSQIMLWRIQTTL*

5'UTR

chr07:29571497..29571527 (- strand) : 31 bp

CDS

chr07:29570880..29571496 (- strand) : 617 bp

chr07:29568787..29569066 (- strand) : 280 bp

chr07:29566236..29566355 (- strand) : 120 bp

3'UTR

chr07:29566093..29566235 (- strand) : 143 bp

FASTA

>Os07t0694400-01 class=Sequence position=chr07:29566093..29571527 (- strand)
CAGATCAGAT CGATCCGGGC AGGCGGGCAG CATGGCGTCG GCAGGTGGCT GCAAGAAGAA GACGGGAAAT AGTCGTAGTA
GGAGCCCTCG TAGCCCGGTG GTGCTGCGGA GGGCGATGCT GCATTCGTCC CTCTGCTTCC TGGTCGGCCT CCTTGCCGGC
CTCGCCGCCC CCTCCGACTG GCCCGCTGCC GCCGGCGCCG CCGTCTTCCT CCGCACGCTC CGTGCCAGCA ATGTCATCTT
CAGTCGCAGT AGCAATAGGC CGCAGCAGCC GCAGCTGGTG GTAGTGGTCA CCACCACCGA GCAGTCCGAC GACTCCGAGC
GGCGCGCCGC CGGGCTGACG CGCACGGCGC ACGCGCTGCG GCTGGTGTCG CCGCCGCTTC TCTGGCTGGT GGTGGAGGAG
GCCCCCGCGG AGAAGCACGC GGCGCCGCCC ACGGCGCGGC TGCTGCGGCG CACGGGGGTG GTGCACCGCC ACCTCCTCAT
GAAACAAGGA GATGATGATT TTAGCATGCA GATATCGATG AGGAGGGAGC AGCAGAGGAA CGTGGCTCTG CGCCACATCG
AGGACCACCG CATCGCCGGC GTCGTGCTCT TCGGGGGCCT CGCCGACATC TACGACCTCC GCCTCCTCCA CCACCTCAGG
GACATCAGGT ACAGCATCAC AATACATACC TACGTATATG CGTACACTAC ATCCTTATTA GAGTCTTAGA AAAAAATACT
CGTACGTTGT AACATGTtat ggtttagtta agatgaaatt cactatgtga attcacttga atctatatat ttctagaaaa
tcatgagcta cagttaaaag tccgacgagt ccgctcatca caatttagta tgcgagtttt ttttaaagag attcttttat
acgattcttc ctgtattact aaaaagcgaa caaacttaaa aaaaaaacca gatatgtatt tccaaaaacg aacgaacttg
gaaactgact ctacacgaat gacgtgccaa agtaccggta aaaatatttt caatttttat aatatagGCT GTgttccctt
caaaacttcc aaaaattccg tcaaatcaac tatttgtaca catgcatgga gcattaaatg tggataaaaa aaaccaattg
cacattttgc atgtaaatta cgagacgaat cttttgagcc taattacgcc atgatttgac aatgtgatgc tatagtaaac
atttgctaat gacggattaa ttaggtttaa taaattcgtc tcgcggttta taggcggaat ctgtaattta ttttgttatt
agtctatatt taatacttca aatgtgtatc tgtctactta aaaaaaaatt ggtacaccaa ctaaacacCT CTATAGTAGA
GGTAAAGATA TTTTAGTCAA CACTCAACTA CATTCCGCTA TATAtaggcc tgggttagtt actaattttc tttttaaact
tttaattttA ATGTAGAACT AAACAAAGCC ATACTACTCC AGTATGTTTT TAATTACTAG TAGTGAGCTA GCTAGCTAGA
GACAAACAAT GTACACATAA CATGGAGGCC TCCCGGAGTG ATAGTTTTTG TACGTAAGCA GGtactccct ccgtcccaaa
ataagcatag ccatgaattt tcgtgtctaa ttttaattgt ccattttatt taattttttt aaaaaactaa aaaaaatata
agtcacacat aaagtactat tcgtgcttta taatctaata acaaacaaaa tactaatcat aaaaaaataa ataaaataga
tgatcaaaat tgaacacaga aactcgtaac tatgtttgtt tttgaacgga gggagtaCTA CGAAGCTAGG GTGTCGGTGG
ATGGAAGGGC CCTCCCTACT ACTACAATAG CTACTCCTTA GGATTCAAAA TTATATATGT GTCATCCTAT TCACATTTTT
CTCTCCAATC ACTCTTTGAA ATTTCTCCCC ATTTTACTCT ATAGTGCACC CTCCATCCCT AAAAAAATAA AATTAGAGAT
AAACCTGGAT AAATTCATTC TCAAAAGGta ctacctccgt cccatattac ttgtcgcttt gactttttcc ttataacgtt
tgaccattcg ttttatttga aaaatttata caaatataaa aagggataag tcatacttaa aatacttttg ataataaagc
aaatcacaaa taaaataaac aataatttca aattttttta ataaaacgaa tgatcaaaca ttacaaataa aaaaaggtag
tatcttttta agacggggag agtaCTCTAT AATTTATTAT TATGTAGGAG TACTTACTAC TAATTTAAAG TTGAGCGTGA
AAAATGATTG CTGAAATTAA AATGAGAGGG ATGTCGTAGC AGTAGCGCGT TAATTATTGT ATATGGCCGT ACAGTGCAGT
ATAGTACAGG ATGTGTCGGC AAGAATGAAT GATTTGATGG GGCTGGCATA TGTAAATGCA GGACATTTGG TGCGTGGCCC
GTGGCGACAG TGTCGGCGTA CGAGCGAAAG GTGATGGTGC AAGGCCCACT CTGCATCAAC ACATCCTCCT CGTCGGTGAT
CACCCGCGGC TGGTTCGATA TGGACATGGA CATGGCGGCC GGCGGCGAGC GGCGAGCGGC CGCTGACCGG CCGCCTCCGG
AGACGTTAAT GGAAGTGGGC GGGTTCGCGT TCAGCAGCTG GATGCTGTGG GACCCGCACA GGTGGGACCG CTTCCCCCTC
TCCGACCCCG ACGCCTCGCA GGTCAGCCAC TGCCCAGTGC CCGGAAAGAG ATCCCTGACT TTGTGCAGTT TGCAGTTATG
CCACTGGTGA CACCAGTGGC ATAACACCAG TGGCATAACT GCAAACCAGT GGCATAACTG CAAACTGCAC AAAGTCAGGG
GATCCTCATT CCCAGTGCCC ACCCATCATC GCTACCTCTC ACTCGATCTA CTCCTGCCAC GTAGTAGTAA TTAATTAGCC
TAACCACGTC GTCCACCCCA CCTTCAGGCG GACCGGAGTA TTATATCACG ATTCTCAATT TCTTACTTAT TAGTCAttcc
atattttaac gtataacgtc gttgactttt aagtaaagtt tgatcattcg tcttattTAa aaggaaaaag tacgttttac
cctctgaact attgtgacag tacgaattac cctcccgaac cataaaatca gatatattac acctcaaact attgataccg
gatgaattac ccccccgact caatactgag cggttttgct cctacgtggc atagacatgg cgtcgatgtg gaaatccaat
cagcaaaaaa aacacacaca cacacacaca cacaagggcc cacatgtcat tatctctctt cagtcttccc cctccccctt
ctctctctca ggcgtgcgtc aacgggcaat gcgcgacggc agcggcacgc ggacgggcgg cgagcgcggc aaggagtggt
ggggccgaga caggcggcgg gcgggtcggg ggcgcagcgg acgtggtgga gaggtggccg gcaggcgtga cggcgcctgt
gccctcctgt cgcggcggca gcggcgcgcg gacaggcggc gagcgggggc cgcgggcgcg gcgggtggcg cggcagggag
tggtggggcc ggggcaggca gcgggcgtgg tggagaggcg gccggcggGC CTGACGGCGC CCGTGCCCCC TATCGCAGCG
GAGGGCGGCG AAGTGGCGAG GGCGGCGAAG TGCCCTCCTC TCATACCTCT CTCTCGGGCC GTCGGGAGGT CGGTGCGCAC
GCCTGAGCTT GCCGTCGTCA TCTTCAATGT CCTCGGGACC TTGGCGCCCG TGCCCGTCTC GCCCTCCCCA CCGCGCCCAC
CGGAGCTCGA GGCGGCAGGA GGAGGGGACA GCGAAGGGGA GCCTGGGCTC ATCGTACTCC AGCAGGAGCG GCTCGAACGA
CGACGGCGGC GGCTGGGGGA TGACTCCGAC GACTCTTCCG GCCTCCACGC TCCCTCGCCG GTCTCCTCAC CTCCTTCCTC
TCTGCCCGCC CCGCTAATGC CGGCATGCTT CGGCCGCCGC CGCTCCGCCC GCGTTGCCAC CGCTGCTTCG CCCCGCCGCT
CTGCCGCCGG CGCGCGAGTC GCAGCCGCTA GCATCTAACG GGAGAGAGAG AGGGGGTGAG AGGGAAAGAG AGAGAGAATA
TTATGTCAtg acaggtgggc cctatccttt atttaatgaa aaacttgctg actggactgc cacgtagacc aaaaccgctt
acaaaactgt tgggggggtt tcatccggta tcgatagttg agggtgaaaa atgactggtt ttcaggttta gggggtaatt
catactcacc caatacttca gggggtaatt cgtacttttc ctatttaaaa ttattgtgta aatataaaaa tatttatgtc
attctgataa aacatttgat gataactcaa gtcataataa aaaaaataat aattatccaa attttttaaa taaaacgaat
gatcaaatgt tggttaaaaa gtcaacaaca ttatatatta aaatacgggg aagGGAGTAC TTTCTTGTCA TGTCCTGGGG
CTGGTCCTAG CTATAGATAG ATCAGTAGta ctacctcgtt tcagattata agactttcta gcatttgtcc atatgtatat
agatgttgat taatctagtc acacacacac acacacacat atatatatat atatatatat atatatatat AGTGTGTGTG
TGAGTAAAGT CGAAACGAAG GAAGTAGCTA GCTAACTGAA AAGAGATTAA AAGTCGGAAG AATATAATGC GCAATTCACG
TACGCACACG ACACTAGACA CGCACAAGCT CCGCGTCTGT CTGCTTTCTT TTTGGTTTGT TTGTTTGCTT GCTTGCTTAA
TTTCATCAAT CATTTCCATA TATTATTCCA GCCTCACTAG CTAGAAGCCT TTCAGCGTGT AGTAGTAGTA CATGTACTAT
AATTACCGTA CAGTTTGGAT CCCAATCTGC AGATTCATCA TTACATAAGT ACACAGTAAC TATTGACAAT TACGAAGTAG
GAGTACGTAC TAGTAATTGA GATTATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATGC GCTTAATAAT ATGTGTATAC ATATATATGC AGGAATCAGT GAAGTTCGTG CAGCGGGTGG
CGGTGGAGGA ATACAACCAG TCGACGACGA GGGGGATGCC GGACTCCGAT TGCTCCCAAA TCATGCTCTG GCGCATCCAA
ACTACGCTCT AGGCTCTAGC TAGCTTAATT TCATTCTTCT TCCTTAATCA TCGATCGTCA ATCTCCAAAA CCCACACTCC
TACTCCTATC TAAGACAAAT ACCTGCATAT AAATATATAC ACACGTATAC GTGGTGTGTT CACGTACGGT TAATT

Locus: Os07g0694400

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Locus: Os07g0694400

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