Os08t0196900-01

Locus

Os08g0196900

Description

Hypothetical conserved gene.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CGSNL Gene Name

Oryzabase Gene Symbol Synonym(s)

OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118

Oryzabase Gene Name Synonym(s)

KIX domain protein 5, F-box protein 270, F-box protein 419, endosperm-specific gene 118

Transcript Evidence

AK241459 (DDBJ, Best hit)

Protein Evidence

B8BBI1 (UniProt)

Literature

Note

Manual Curation

Functional domain (InterPro)

F-box domain, Skp2-like (IPR022364)

Full-length cDNA

J065164E04 (Online Clone Ordering)

Expression Databases

TENOR (Os08t0196900-01)

Others

Oryzabase (13459)

KEGG (Os08t0196900-01)

Transcript

1713 bp

>Os08t0196900-01 Hypothetical conserved gene.
ATCTCTAAGCACTTCTACCTAACGAAACCAAAGAGGAGAAGACTTGTGTTAGTCGGTGCC
ATGGACGAGTTAGGGATCATCGAGCAAGGCGTCGACTGGAGGACTCGCCTTGGCCAAGAC
ATTCGCGATTGCATGATAAATGATATATTGTTCAGCCTGCAAACGAAATTGCAAAGTACT
ACTACAGCATTGATTGATCTCCAGAAGGTTGCTGTCAGAATAGAGGAGAGGATCCATACG
ATAGCTAGTGACTATGGTGATTATCTACGGAGGATTTGTCTGACAAGAGGTGATTTGGAC
TCATATGATGTATTTTTGAATGATTGTCAACGTCAGCAAGCTTCAATCCGTTCATCCATC
TTGCTCCATCAGGAGAATAAGCAAGGTGATCAAATTGTCCAGGCAAAAAGAAATATTAAG
GGGACATCATCTAGCAGTGTGCTATCTAATCAAGTAGCCCTAAATGACCACAAGGAGCAC
TCACACCCCTACGAGAAGGATATGATCAGCAAACTCCCTAACGATTTGGTCCAACATATT
ATGTCATTCTTGTCAATGCGAGAGGCTGTGCGCACCAGTGTTTTGTCCCATTGGTGGGTC
AACCAGTGGACCTTCTTGAAGTCCATTCAGCTTAATATATATTGGTTTCATATGGACAGA
GAAAAATTCAGTAGTTTCCTTGACAAACTATTGCTAAGCCGTGTCCAAGCTGATGCTCCC
ATGGACACATTCGAGCTAAAATCTTTTGCAATTGACCGCGCCAATTATTGGATTAATCAT
GCAATCAAGCACAATGCTAAAGTGCTTAAATTTGCTGAATATGGAAAATGGGAACCTTTC
TACTTGGATCCAAATCTTGTGGAGTTAAGTTCTCGGTATCTAGAAACTTTGGAGCTGACT
AATGTTGCTCTAGATGCGACGATATTCAATCAGTTGGCCAATGCATGCCCAGCATTGCAA
AATATGCTGCTGACAGACTGCTTACTGGAGGTAGAAGAAATTTCATCAAGCTCATTGAAG
AATCTGGATATAATTGACTGCTATATTCTCAAGGACCTGAGCATTTGTACTCCTAGTTTG
GTTTCATTGTGCATCAAGAATGAAAGAACAGACAATTCTTCGTTCAGAAACTCTTACCTA
ATATTCGCAACGGCCATTATCATTGATGCTTCAAATGTCAGTAGCATGGAGTTGTTAGCT
ATGGATAGACAGTTCACATTCGTGGAGAAAGACGGGGGCGAGCCAATGTTCAAGAATCTC
AGAAACTTGAGCCTAGGTCTATGGTGCATTAACAACATGTTTTCGCCTCTACGTCGATTC
GTCCGGCATTCGCCTATGCTGAGGATGGTGACTCTGAGGATCAGTCCGCTGGATTGGAAG
TCCCATCTCACGAAGGAACATCAGGAGATGCTGATCAGCATTCGTGATCGTCGTGGCCTG
ATTCTTTATATCGATTGGTATTGAAGGCCAAGGGCTTCTGCGGTGCTCCAATGGTGAATA
AAATTGCTGCCAAATTAAGCTGGTTGCTGAAACATTGAGACCAATTTAAGTTTCTTTTCG
TTTTAATCGCAGTGGATCAAACTTGTTGCAGTAATAATTACCTGTTACTTGACTGCATGT
GTCAGCCTGGAGTCTGGATGTTGTCTTTGATGTGGTGTCATTGTTACTTATACTGTTTCA
TTATATGGATGAACCAATGAGTCTTTAAGAACC

CDS

1404 bp

>Os08t0196900-01 Hypothetical conserved gene.
ATGGACGAGTTAGGGATCATCGAGCAAGGCGTCGACTGGAGGACTCGCCTTGGCCAAGAC
ATTCGCGATTGCATGATAAATGATATATTGTTCAGCCTGCAAACGAAATTGCAAAGTACT
ACTACAGCATTGATTGATCTCCAGAAGGTTGCTGTCAGAATAGAGGAGAGGATCCATACG
ATAGCTAGTGACTATGGTGATTATCTACGGAGGATTTGTCTGACAAGAGGTGATTTGGAC
TCATATGATGTATTTTTGAATGATTGTCAACGTCAGCAAGCTTCAATCCGTTCATCCATC
TTGCTCCATCAGGAGAATAAGCAAGGTGATCAAATTGTCCAGGCAAAAAGAAATATTAAG
GGGACATCATCTAGCAGTGTGCTATCTAATCAAGTAGCCCTAAATGACCACAAGGAGCAC
TCACACCCCTACGAGAAGGATATGATCAGCAAACTCCCTAACGATTTGGTCCAACATATT
ATGTCATTCTTGTCAATGCGAGAGGCTGTGCGCACCAGTGTTTTGTCCCATTGGTGGGTC
AACCAGTGGACCTTCTTGAAGTCCATTCAGCTTAATATATATTGGTTTCATATGGACAGA
GAAAAATTCAGTAGTTTCCTTGACAAACTATTGCTAAGCCGTGTCCAAGCTGATGCTCCC
ATGGACACATTCGAGCTAAAATCTTTTGCAATTGACCGCGCCAATTATTGGATTAATCAT
GCAATCAAGCACAATGCTAAAGTGCTTAAATTTGCTGAATATGGAAAATGGGAACCTTTC
TACTTGGATCCAAATCTTGTGGAGTTAAGTTCTCGGTATCTAGAAACTTTGGAGCTGACT
AATGTTGCTCTAGATGCGACGATATTCAATCAGTTGGCCAATGCATGCCCAGCATTGCAA
AATATGCTGCTGACAGACTGCTTACTGGAGGTAGAAGAAATTTCATCAAGCTCATTGAAG
AATCTGGATATAATTGACTGCTATATTCTCAAGGACCTGAGCATTTGTACTCCTAGTTTG
GTTTCATTGTGCATCAAGAATGAAAGAACAGACAATTCTTCGTTCAGAAACTCTTACCTA
ATATTCGCAACGGCCATTATCATTGATGCTTCAAATGTCAGTAGCATGGAGTTGTTAGCT
ATGGATAGACAGTTCACATTCGTGGAGAAAGACGGGGGCGAGCCAATGTTCAAGAATCTC
AGAAACTTGAGCCTAGGTCTATGGTGCATTAACAACATGTTTTCGCCTCTACGTCGATTC
GTCCGGCATTCGCCTATGCTGAGGATGGTGACTCTGAGGATCAGTCCGCTGGATTGGAAG
TCCCATCTCACGAAGGAACATCAGGAGATGCTGATCAGCATTCGTGATCGTCGTGGCCTG
ATTCTTTATATCGATTGGTATTGA

Protein

468 aa

>Os08t0196900-01 Hypothetical conserved gene.
MDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTTTALIDLQKVAVRIEERIHT
IASDYGDYLRRICLTRGDLDSYDVFLNDCQRQQASIRSSILLHQENKQGDQIVQAKRNIK
GTSSSSVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWV
NQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANYWINH
AIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFNQLANACPALQ
NMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYL
IFATAIIIDASNVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCINNMFSPLRRF
VRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRDRRGLILYIDWY*

5'UTR

chr08:5602622..5602681 (+ strand) : 60 bp

CDS

chr08:5602682..5602767 (+ strand) : 86 bp

chr08:5603786..5603894 (+ strand) : 109 bp

chr08:5604794..5604974 (+ strand) : 181 bp

chr08:5605585..5606360 (+ strand) : 776 bp

chr08:5606686..5606841 (+ strand) : 156 bp

chr08:5606971..5607066 (+ strand) : 96 bp

3'UTR

chr08:5607067..5607315 (+ strand) : 249 bp

FASTA

>Os08t0196900-01 class=Sequence position=chr08:5602622..5607315 (+ strand)
ATCTCTAAGC ACTTCTACCT AACGAAACCA AAGAGGAGAA GACTTGTGTT AGTCGGTGCC ATGGACGAGT TAGGGATCAT
CGAGCAAGGC GTCGACTGGA GGACTCGCCT TGGCCAAGAC ATTCGCGATT GCATGATAAA TGATATGTGA GTGCACTCTC
TCTCTCTCTC TCTCTCTCAC CCAATTCTTA CTTTTTTTTG CCATGAGAAA TTGATTGCAG TGTTTTGAAT CGATGATAAT
TTATGAATAT TGGATACCCT GCTCGATGCT ATAGTACTTG TTTAGTGATC TAATTGAATC ATGATATGTA TCAGTAGTCA
GATCTAATTT GACGTTTTCT AGATCCAAGA GTTGTGATAA TTCTGTGGCT TGCTATCTAA CCGTCACGAT AACCTAAAAA
TTGGCATCAG TTTTGGTATA AAAAGTTGTT GGTGAGGTTC AAACCTTTGT GTATTGATCA TACCCATGTT TAGAAAATGA
TCCCAATTAA TGAACTAAGG TTGCATGTCG ATAGTTCTTT ACCAAGTTAC TTGGCCAGTT CTTTGCATGA CTCTAAGCTT
TATGGACTAG TATTTTAGTA CTGAAACTTC AGCTGTCTGT CGATTTTTTG TTATATTATT TAACTAGTAT TTTACTTCAG
CGCCTATTCT TTCCCTGTTC CCACCATGAG GAGGAGGAAG AGGGAGAGAC CTGGAGAAAG GATAGGTGAT TGTTTATATG
TATGGGTATA TGTAATTGCT TTTAATGCAG GTGATAAAAC TCACAAGAAA GATGATCCCA TATGCATGCT CCCACATCAT
TTTCTCTTTT TCTTTTTGCA TTATATATAG TTTCTCCTTA TTATTGGTTA TGAATGCTCT CTTGTAGACT CTTAGCATGT
ATAACGAATT GCTAAAATCT TGCTCACTTC TGGTTGGACA AATTATATTT CATTATTTAT GAGAATGTAT TTACAATTTT
GAACATGTTA CTTTGCCACA TGCATTGCCC AAATAGTGAA CAGTTTGCAT ATGTATTTCT TGTACGAAAC AACCCCTAAA
TCCTCAGTTG CCTGTTTCTT TTATTGCTTG TTATATTAGA ACCACATTTT TGAACTATTT AGGTTGGAAG TACCATATTG
AAACAATAAA TCTCTCATGT TACCATTCAA CATTCTGTCT GCAGATTGTT CAGCCTGCAA ACGAAATTGC AAAGTACTAC
TACAGCATTG ATTGATCTCC AGAAGGTTGC TGTCAGAATA GAGGAGAGGA TCCATACGAT AGCTAGTGAC TATGTATGAT
AGTTTCTTCT TACTAGATTT TTTTTGTAAT ATAATTTCCT TATATATTAA TTATACAATA CTTTATTTAT CTTTGATGTG
CGCATGATAG AGTATTAATC TTAATATAGC AACACTTCTG CTGATCTGCT AGTTATTGCA ATGTCTCATA GCTTTTTGAG
TAAGTACAAC TTCTTGCTAG AAATCCTGAA CTAGTTAACT AGAGCTATAA CAATTGTGTG AAACCATGGG TACGATTGTC
TTGCTTCATA TTATGTAACA TAATACAATA TAATGTATTG GTTGCAAGAT GCTCTACACC AATTTTATCG ATCTAATTAA
AAATGTTTAT TACTCCTTCA TTTGGTATCG TGCACAAGAC ACTAGGACTG AGGCTGTATT CAATTAAAGT TTTTCATTTT
ACATAGTTCC AAATATTTAT GTCCCCTTTT CAATTTATTG GCTTCAAGAT GTAAATCTCT AGATTAATTC TAGAATATAT
TGATTTTATC GTGTGCACTG ATTTTATTGT CATGCAATTA CTTGTTTTGG TGGTGTTCAT Atactccctc cgtttcacaa
tgtaagccat tctagtattt cccacattca tattaatgtt aatgaatcta gatatatata tatatatata tatatatata
tatatatata tatttgtcta gattcattaa cattaatatg aatgtgggaa atgttataat gacttacatt gtgaaacgga
ggaagtaCCA TTTAATAATA TATGCACTTA TTCTTGACTT GCTAGATTGT TGACATGTTC CTTTTGCTAT ATATCTTTGT
ATAATCTTTT TGAAACTCAT ATGGTTATGG TTCATCAATA GGATGTTCAG TTTTAAACGG AAGTTCTCAT AATTTTTTTG
TCTTACACTT AGGGTGATTA TCTACGGAGG ATTTGTCTGA CAAGAGGTGA TTTGGACTCA TATGATGTAT TTTTGAATGA
TTGTCAACGT CAGCAAGCTT CAATCCGTTC ATCCATCTTG CTCCATCAGG AGAATAAGCA AGGTGATCAA ATTGTCCAGG
CAAAAAGAAA TATTAAGGGG ACATCATCTA GCAGTATGTT CTTGAGAATT TGAACACCAG TGTACTCAGC AGATATATTG
TTTTGATCTG TTTTTATGGT GCCTGTATGA CAAAAGAATT GTTTGCTTAG TAAATATTCG AGAAAAGTGG TTTTTTTTTT
ACCCGAGTCT ACACATGAAT CTAATGTTCT GCACTAGTTT ATACATGACA ATACATCATA CATGCAAAGA CAATTTTCAA
CGTCTACAAC CTGATCCCGT TTGATTAAAC AAGCATTGTA ATGTTTTTCT TCTTTAGACA TTGGAAATTT GGGTGCAAAA
CGATGAATAT TAGTTATTCT TATGCAACGG ATGATTCAAG TGTGTACATT GCCTCCTAAT TATGTGCCCC CTTTTTTTTT
CAAAAGATAA ATTGGAGCTA GCCCACCGTA CTGACTTATA TCATCTATGT AAAATGAATT ACAGATGGCA ATCTCTCTGT
GAAACTAGAG TTAAGCAAAG CATAAAAACT ACAAATTTGT TGTAAGTTGT TTAGGTGGTT CTCCAAGATC AAGTATCAAC
ACTAAGGAGC ATGTGTTAGA GTCAATGCCA GTAATTGTTC TCCACTAAAA TAATGTAACA CAATATCCAC TTTTATATTG
CAGGTGTGCT ATCTAATCAA GTAGCCCTAA ATGACCACAA GGAGCACTCA CACCCCTACG AGAAGGATAT GATCAGCAAA
CTCCCTAACG ATTTGGTCCA ACATATTATG TCATTCTTGT CAATGCGAGA GGCTGTGCGC ACCAGTGTTT TGTCCCATTG
GTGGGTCAAC CAGTGGACCT TCTTGAAGTC CATTCAGCTT AATATATATT GGTTTCATAT GGACAGAGAA AAATTCAGTA
GTTTCCTTGA CAAACTATTG CTAAGCCGTG TCCAAGCTGA TGCTCCCATG GACACATTCG AGCTAAAATC TTTTGCAATT
GACCGCGCCA ATTATTGGAT TAATCATGCA ATCAAGCACA ATGCTAAAGT GCTTAAATTT GCTGAATATG GAAAATGGGA
ACCTTTCTAC TTGGATCCAA ATCTTGTGGA GTTAAGTTCT CGGTATCTAG AAACTTTGGA GCTGACTAAT GTTGCTCTAG
ATGCGACGAT ATTCAATCAG TTGGCCAATG CATGCCCAGC ATTGCAAAAT ATGCTGCTGA CAGACTGCTT ACTGGAGGTA
GAAGAAATTT CATCAAGCTC ATTGAAGAAT CTGGATATAA TTGACTGCTA TATTCTCAAG GACCTGAGCA TTTGTACTCC
TAGTTTGGTT TCATTGTGCA TCAAGAATGA AAGAACAGAC AATTCTTCGT TCAGAAACTC TTACCTAATA TTCGCAACGG
CCATTATCAT TGATGCTTCA AATGTCAGTA GCATGGAGTT GTTAGCTATG GATAGACAGG TACTGTACTG CTTGCCCTGT
AGCACTGATC CTTTCTCCCA AACACTCTGT ACATTACTAT TTGTTTCATA GTTTTACTAT TTGTTTAGTA TATGCATTTG
TACATTACTA TCATACATTT TCATGTGAAT ATATTTATGC AAATGAATTT TCTTTCATAA CAAGGACACA ACATAAAACA
TTCATTTTGC ACGGTATGTA TATACCCGAT TTCAAATCGA CACATACTTC TCTGACCACC TTTTTTACCA CAATTGTTTT
GGATTTCATA GCATTAACAG TATTTAAGAC TTAAGACATG TTTTTTTCCT GTGTACATAT GAAGTTCACA TTCGTGGAGA
AAGACGGGGG CGAGCCAATG TTCAAGAATC TCAGAAACTT GAGCCTAGGT CTATGGTGCA TTAACAACAT GTTTTCGCCT
CTACGTCGAT TCGTCCGGCA TTCGCCTATG CTGAGGATGG TGACTCTGAG GATCAGTCCG GTCAGTGCCA TCCATTGCAT
TGCATCATCC CCATGCTTCC TGTGTCCAGC TTCTTTTTCT TTTTTTTTTG GTTACTATCA TTGTTGAAAG CCTAGAGCTC
TAATGATGCT GCAAACCTTT CAACTTCAGC TGGATTGGAA GTCCCATCTC ACGAAGGAAC ATCAGGAGAT GCTGATCAGC
ATTCGTGATC GTCGTGGCCT GATTCTTTAT ATCGATTGGT ATTGAAGGCC AAGGGCTTCT GCGGTGCTCC AATGGTGAAT
AAAATTGCTG CCAAATTAAG CTGGTTGCTG AAACATTGAG ACCAATTTAA GTTTCTTTTC GTTTTAATCG CAGTGGATCA
AACTTGTTGC AGTAATAATT ACCTGTTACT TGACTGCATG TGTCAGCCTG GAGTCTGGAT GTTGTCTTTG ATGTGGTGTC
ATTGTTACTT ATACTGTTTC ATTATATGGA TGAACCAATG AGTCTTTAAG AACC

Locus: Os08g0196900

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Locus: Os08g0196900

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