Os08t0537800-01
Locus
Os08g0537800
Description
Otubain-like protease with deubiquitination activity, Determination of grain size and shape
RAP-DB Gene Symbol Synonym(s)
WTG1, OsOTUB1
RAP-DB Gene Name Synonym(s)
WIDE AND THICK GRAIN 1
CGSNL Gene Symbol
WTG1
CGSNL Gene Name
WIDE AND THICK GRAIN 1
Oryzabase Gene Symbol Synonym(s)
OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1
Oryzabase Gene Name Synonym(s)
new plant type 1, OTU domain-containing ubiquitin aldehyde-binding protein 1, wide and thick grain 1, otubain 1
Transcript Evidence
AK059388 (truncated)
Inferred from literature
Protein Evidence
Inferred from literature
Literature
PMID: 28621888
Note
- Exon-intron structures, exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
October 10, 2017
Gene Ontology (GO)
Biological Process: protein deubiquitination (GO:0016579)
Molecular Function: hydrolase activity (GO:0016787)
Functional domain (InterPro)
Peptidase C65, otubain (IPR019400)
Ubiquitin thioesterase Otubain (IPR016615)
OTU domain (IPR003323)
Experimentally confirmed subcellular location
nucleus, cytoplasm
Full-length cDNA
001-026-H03(truncated) (Online Clone Ordering)
Expression Databases
TENOR (Os08t0537800-01)
RiceXPro (AK059388)
Others
Oryzabase (21850)
Transcript |
1242 bp |
>Os08t0537800-01 Otubain-like protease with deubiquitination activity, Determination of grain size and shape CGGCGGTGGGGGAGGAGGTGGTGGAGGGTGCTCGGACTCCGTGTCGGTCGAGCTCTCGAT GGGCGGGGACTACTACCACTCGTGCTGCGGCGACCCCGACCCCGACCTCCGCGCGCCCGA GGGGCCCAAGCTGCCGTACGTCGGGGACAAGGAACCTCTCTCCACTTTAGCCGCCGAGTT TCAGTCTGGCAGCCCCATTTTACAGGAGAAAATAAAGTTGCTTGGTGAACAGTATGATGC TTTAAGAAGGACACGAGGAGATGGAAACTGCTTTTATCGAAGCTTTATGTTTTCCTACTT GGAACATATCCTAGAGACACAAGACAAAGCTGAGGTTGAGCGCATTCTAAAAAAAATTGA GCAGTGCAAGAAGACTCTTGCAGATCTTGGATACATTGAGTTCACCTTTGAAGATTTCTT CTCTATATTCATTGATCAGCTGGAAAGTGTTCTGCAGGGACATGAATCCTCCATAGGGGC CGAAGAGCTTCTAGAAAGAACCAGGGATCAGATGGTTTCTGATTATGTTGTCATGTTCTT TAGGTTTGTCACCTCTGGTGAAATCCAAAGGAGGGCCGAGTTCTTCGAACCATTCATCTC TGGCTTGACAAATTCGACTGTGGTTCAGTTCTGCAAGGCTTCCGTGGAGCCGATGGGCGA GGAAAGTGACCATGTCCACATAATTGCCCTATCAGATGCGTTGGGTGTGCCAATCCGTGT GATGTACCTAGACAGAAGCTCATGTGATGCTGGAAATATAAGTGTGAACCACCATGATTT CAGCCCTGAGGCCAATTCATCGGACGGTGCTGCTGCTGCTGAGAAACCTTACATTACTTT GCTCTACCGTCCTGGTCACTACGACATTCTCTACCCGAAGTGATTCTTGCCCGGTGAAGC ATTGTTGGTTTTTTCCTCATGGCCAGTTTGAGAAATCGCTGTCTAGAACTCTGTAGTTAT GGTGCTCGTGCATGCCACCAAAGGCCGGCCTTACAAAGAAAAGGACTTGTGCTCTTGGTC TTGGGTGGTGAACTGGTGATCAAGGCATGCTTTGCTTGCCACTACCCAAATATCTCAGAT CGGTAGTTTTTCCCTGCGTCAAGTCTACTCTGGTACAAACGATCTTGACATTGTGGTGTT GACTGTTGAGAAGATTCTGTTGATACTGTTACTAATCCTCTCTTACTCACCTGCATCATA AATTGATAGTGCATGCTTTGTCATGGCAACTAATTCCATTTT
CDS |
825 bp |
>Os08t0537800-01 Otubain-like protease with deubiquitination activity, Determination of grain size and shape ATGGGCGGGGACTACTACCACTCGTGCTGCGGCGACCCCGACCCCGACCTCCGCGCGCCC GAGGGGCCCAAGCTGCCGTACGTCGGGGACAAGGAACCTCTCTCCACTTTAGCCGCCGAG TTTCAGTCTGGCAGCCCCATTTTACAGGAGAAAATAAAGTTGCTTGGTGAACAGTATGAT GCTTTAAGAAGGACACGAGGAGATGGAAACTGCTTTTATCGAAGCTTTATGTTTTCCTAC TTGGAACATATCCTAGAGACACAAGACAAAGCTGAGGTTGAGCGCATTCTAAAAAAAATT GAGCAGTGCAAGAAGACTCTTGCAGATCTTGGATACATTGAGTTCACCTTTGAAGATTTC TTCTCTATATTCATTGATCAGCTGGAAAGTGTTCTGCAGGGACATGAATCCTCCATAGGG GCCGAAGAGCTTCTAGAAAGAACCAGGGATCAGATGGTTTCTGATTATGTTGTCATGTTC TTTAGGTTTGTCACCTCTGGTGAAATCCAAAGGAGGGCCGAGTTCTTCGAACCATTCATC TCTGGCTTGACAAATTCGACTGTGGTTCAGTTCTGCAAGGCTTCCGTGGAGCCGATGGGC GAGGAAAGTGACCATGTCCACATAATTGCCCTATCAGATGCGTTGGGTGTGCCAATCCGT GTGATGTACCTAGACAGAAGCTCATGTGATGCTGGAAATATAAGTGTGAACCACCATGAT TTCAGCCCTGAGGCCAATTCATCGGACGGTGCTGCTGCTGCTGAGAAACCTTACATTACT TTGCTCTACCGTCCTGGTCACTACGACATTCTCTACCCGAAGTGA
Protein |
275 aa |
>Os08t0537800-01 Otubain-like protease with deubiquitination activity, Determination of grain size and shape MGGDYYHSCCGDPDPDLRAPEGPKLPYVGDKEPLSTLAAEFQSGSPILQEKIKLLGEQYD ALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFEDF FSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEPFI SGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNHHD FSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK*
5'UTR
chr08:26887305..26887362 (- strand) : 58 bp
CDS
chr08:26887212..26887304 (- strand) : 93 bp
chr08:26885950..26886015 (- strand) : 66 bp
chr08:26885756..26885839 (- strand) : 84 bp
chr08:26885560..26885682 (- strand) : 123 bp
chr08:26884862..26884914 (- strand) : 53 bp
chr08:26884655..26884704 (- strand) : 50 bp
chr08:26884482..26884582 (- strand) : 101 bp
chr08:26883485..26883739 (- strand) : 255 bp
3'UTR
chr08:26883126..26883484 (- strand) : 359 bp
FASTA
>Os08t0537800-01 class=Sequence position=chr08:26883126..26887362 (- strand) CGGCGGTGGG GGAGGAGGTG GTGGAGGGTG CTCGGACTCC GTGTCGGTCG AGCTCTCGAT GGGCGGGGAC TACTACCACT CGTGCTGCGG CGACCCCGAC CCCGACCTCC GCGCGCCCGA GGGGCCCAAG CTGCCGTACG TCGGGGACAA GGTGAGATGT TGACGCCTCT CTCTCTCTGT CTCTCTCGCT CGCTTTGACT CATCTGCGCT TTGACTCATC TGCGGTCGAT AGATTTGTTC ATGTGGTAGA AATGGGTCTG AATCGTGGTA AGACGCCCAG TGTTGCCATG CCAGTATCCG CTAGTTGTGC CAGCAGGTGA GGCGATAGAT CAGTCCTGTT AGTCTAGTTG GATGCTGATT GTTGGTCATC ATTACTGTTG TATTGGTGCT CCATTTCTAT GTGAATTGAC ATTTTAAGGC GTCTATACAA GCAGTGGGGA CTAGAATTTG GATAACAAGT AACAATTTCC CCTTATTGCG TCATCTTAAA GGATAAGAGG AGTTATCAGA TGCTGGATTT TCTCCTTTAT TTTTAGTCGT GGTGCCTGGA ATAATGGAGA TTGGCTGAAC AAGTTCATAT CAGTTGTGTC CATTTTCATC CTCTGGATGG TCAGTCCTTA AGTATTGTCA GGCGCTATTG TTGGGAGCTG TAACTGTTGT ACTTGATTTT TTAGCTTCGT TGGTGAACTG ATGTTTGGAG GTTCATGCAG AAGTCAGAAC CATGGGGAAT TAGAATTTGG ATGAACAGAC AGCAATTACC TTTCGTGTTC TCTTCTAGGA AAAGAAGGGT TTATCTGTTA TCATTTGCTG GATGTGCTCC TTACTTAATA TTTATGCATG GAATAATAGA GATGGCCAAA CAAGTTTGCT CCATAGCGTA TTATGATTCT AGGATAAAAG TGGTGTCATC CTTTAATCGT CACACCTAGG ACAATAAATG TGAAGGACGA ACTTGTTGAT GCAGAATAAT AGCCTATGCT AGTCAATTCA GCACAGAAAC TGAGGTTAAA TGTGTCCCAA AAGTTTCAGT TAAGGTTCAC ACTAGGATTT ACACGAACAG AACAAATCTG CAAATATAGG CCATATGAGA AGGTGGAGAG CTACATACAC ACAATTTCAT ATGAAATGGA AAATGATGTT GGCACTAAAC TTGGATTTAG GTCAAGTAGT TAGATATTTG ATGCCTCAAA TTCATTTTGT TCTGTTAATT GCAAGCACCT TTTCACAATG GAGGACACTA ATGCATTGCT ATGATTATCT CTGTGTTTGT ACAGTTATTT TAGGCTATCG TATGACTTTC TTCTGCTTTC ATTTGTGTTC ATTATTGATA TCTTTTGAAC CTTGCAGGAA CCTCTCTCCA CTTTAGCCGC CGAGTTTCAG TCTGGCAGCC CCATTTTACA GGAGAAAATA AAGGTCCATA TGGATTTGGC AGTTATAATA TGTAATAGAC ATATTTTGGT TGATCTATCG TATCAATGGA TGGTGCTTCA ATTTGTTCTT ATAATTTCTT GCTTGGTCTG CAGTTGCTTG GTGAACAGTA TGATGCTTTA AGAAGGACAC GAGGAGATGG AAACTGCTTT TATCGAAGCT TTATGTTTTC CTACTTGGTA TTATTTTTGG TCTGTTTCCA TACAAACTTT GACTATTTTA TAAGCTGATG ATCTTATCAT TTGCTTCTAG GAACATATCC TAGAGACACA AGACAAAGCT GAGGTTGAGC GCATTCTAAA AAAAATTGAG CAGTGCAAGA AGACTCTTGC AGATCTTGGA TACATTGAGT TCACCTTTGA AGATTTCTTC TCTGTAAGTC TTTATTGTTA CTTTGTGTGG CCCTCCTTAC TTATCCTGTT CAATTGCTGT TTTGCAACTT ATGCCAGATG TATTCCCTCT GAATAGTATG AAGATCTGTC CGATTATTTT CATGTATGCT TGTTTGCATT TCCTTTTTAG ATGTTCCTGG AATAATTTTT GTATGAGCTA GTTATAATGA GAGCTTGTGC ATTTTCCTGT CATGCAACAA ATTAAATACT AGTGTCTAAT CCTTGTGCAT TGTTAATAAC TTTGAAAATG ATTAGCCTTG AAGATTGGTC CATTATATAT ATGTTCACTT GTTTCTTAGT TAGGATCACT CACCAGTCAC CCTTCTGAAG TTCATAATGT ATCACTTATA AGTAAGCTAG CAAAACAAAA TTTGGACTGT TTGTAGCCAC CCAGAACCCA AATAGATGGA TTTCACATTA TTTTCTACTG GCTTTGGGAG TTATTTGATC GATGCTAGTA CAACGTTGAA ATTTGGGTAG TTGAGATGCA TTTTTCACAA AGGACTCCTT TATTGGTGCT TGATCTACAA CTGGTGTTTT ACTTTTTTAC AAAAAAATGT AATCTCCTTG CAGTGCACTC AAATTATTGC AACCTCCTTC CTTATGTTCC CACCCTCATT ATTTTCAGAT ATTCATTGAT CAGCTGGAAA GTGTTCTGCA GGGACATGAA TCCTCCATAG GGTAAATATC CTAGAGTTAT ATTTGTATCC TTAATGCATA TGACCAATAA TCATGTATTA ACAACAAGCA ATTTTTGTAA TTGTTTATAA AGTATGGCAT GTCCATCATA AATGTTTTCC TTCTGTAGTG AATCTATTTT GTTTTCCTGT ATCCTTAGGG CCGAAGAGCT TCTAGAAAGA ACCAGGGATC AGATGGTTTC TGATTATGGT TTGTACATCC AGATATGTGT AGTATGCCTT TCTCTGCTTT GCTCTCATTA TTTAACTATG TCTTCTTTAG TTGTCATGTT CTTTAGGTTT GTCACCTCTG GTGAAATCCA AAGGAGGGCC GAGTTCTTCG AACCATTCAT CTCTGGCTTG ACAAATTCGA CTGTGGTTCA GGTTAGCTCC ATACTTCCAT TTTATGAGGG TTTGTACAGT CGTTGGGGAG GTATTATGAG GTACAATACC TCCAGGTACC GGGAGTTACC ACACATAAGC ATAAAATGTG TGGTGCCTCT CCAAGGACCA CAAGAAATCT CTTCATTATA TTTGTAATGC ACAGAGCAGA GAGTACAGAC AAATAGACCT GCACTCTGCA TTTTCATTAA GTATTTAGAT GTGAGATTAT TCTATGTTTT ATCTCTCTTG TTAGTATTTT TTGCTCTGTT TTATAATGGA AGTTCATTTT CTTGGGAACT GTCATTCACA AAAAAATGAG TTATCGTACC CTGCCATTTA GTAGGGAATT TGGTGGTAAA AAACCATTAA CTTTTTCTTC AATTTTGTGC CTTCTGCACA AGGTGGGATA GGGCATATAT TGTGGAACAA AAGAGTGCAC AATGACTAAT TATTTAGTAT GCATCACACT GGAGTATGAT ATACTAGTGG AAAGGTTATG GCAAAATACC ATGATAGTAG CTTGATAGAT TAGCAGGTCC GTAAGTATTT ATCCAATGAT AATGTTTTAT TCATTAAACT GTAGCAGGAT AAAATCTACT TATGCACCTT TTTTTCATGA GTAGCAAACA ATGCATTCTC TGGTTTGAAA AACTTGTTCA AGTTGCAGTG TGTTATTCCA ATCCGTGTTT GTGTGACAAG CAATTGCTGG AGTTACTGAT CCTGAGTTCA ATTCAATTTG CAGTTCTGCA AGGCTTCCGT GGAGCCGATG GGCGAGGAAA GTGACCATGT CCACATAATT GCCCTATCAG ATGCGTTGGG TGTGCCAATC CGTGTGATGT ACCTAGACAG AAGCTCATGT GATGCTGGAA ATATAAGTGT GAACCACCAT GATTTCAGCC CTGAGGCCAA TTCATCGGAC GGTGCTGCTG CTGCTGAGAA ACCTTACATT ACTTTGCTCT ACCGTCCTGG TCACTACGAC ATTCTCTACC CGAAGTGATT CTTGCCCGGT GAAGCATTGT TGGTTTTTTC CTCATGGCCA GTTTGAGAAA TCGCTGTCTA GAACTCTGTA GTTATGGTGC TCGTGCATGC CACCAAAGGC CGGCCTTACA AAGAAAAGGA CTTGTGCTCT TGGTCTTGGG TGGTGAACTG GTGATCAAGG CATGCTTTGC TTGCCACTAC CCAAATATCT CAGATCGGTA GTTTTTCCCT GCGTCAAGTC TACTCTGGTA CAAACGATCT TGACATTGTG GTGTTGACTG TTGAGAAGAT TCTGTTGATA CTGTTACTAA TCCTCTCTTA CTCACCTGCA TCATAAATTG ATAGTGCATG CTTTGTCATG GCAACTAATT CCATTTT
