Os08t0557500-01

Locus

Os08g0557500

Description

Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

CYP71

CGSNL Gene Name

CYCLOPHILIN 71

Oryzabase Gene Symbol Synonym(s)

OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b

Oryzabase Gene Name Synonym(s)

cyclophilin 71, cyclophilin 22

Transcript Evidence

AK111654 (DDBJ, Best hit)

Protein Evidence

XP_002877347.1 (RefSeq)

Literature

Note

  • CDS sequences are different between Build 5 and IRGSP-1.0.

Manual Curation

Gene Ontology (GO)

Molecular Function: protein binding (GO:0005515)

Functional domain (InterPro)

WD40 repeat (IPR001680)

WD40 repeat-like-containing domain (IPR011046)

WD40/YVTN repeat-like-containing domain (IPR015943)

WD40-repeat-containing domain (IPR017986)

WD40 repeat, subgroup (IPR019781)

WD40 repeat 2 (IPR019782)

Full-length cDNA

J013147N22 (Online Clone Ordering)

Expression Databases

TENOR (Os08t0557500-01)

Others

Oryzabase (10077)

Transcript

2412 bp

>Os08t0557500-01 Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein.
GGAGCAGAAGGTCTCGAGGAGTCGAGACTTCTCTCCCCCAAATCCCCAGAACCCTAGCGG
AGCTCCACCTCGAGATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCG
CCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCG
CACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCCGGCTC
CCGTGCCGCCGCGGCCGAGGAAGAAGCGCCCGCTCCAGTTCGAGCAGGCCTTCCTCGACG
CCCTGCCCTCCGCGGCCATGTACGAGAAGAGCTATATGCATCGGGATGTCGTCACCCACG
TCGCCGTCTCTCCTGCTGACTACTTCATCACCGGGAGCGCAGATGGACATTTGAAATTTT
GGAAGAAGAAACCAGCTGGGATCGAATTTGCTAAACATTTTCGATCTCATCTCAGTCCCA
TTGAAGGCCTAGCTGTGAGTGTTGATGGCCTACTTTGCTGCACGATCTCCAGCGATTGGT
CTGTCAAGATATATGACGTTGTGAATTATGACATGATGTTCATGATGCGTCTCCCATTCG
TTCCGGGTGCAATTGAGTGGGTTTATCGACAAGGAGATGTTAAACCAAAACTCGCTGTTA
GTGATCGTAATACACCTTTTGTTCACATATATGATACTCATTCTGGTTCAAACGATCCCA
TCATCTCCAAAGAGATTCATGCTGGCCCAGTAAAGGTTATGAAATATAACCATGTTCACG
ATGTTGTGATATCTGCTGATGCCAAAGGACTCTTGGAATACTGGTCTCCGTCTACCCTCA
AATTTCCAGAAGACGCGGTGAACTTTCGTTTAAAAACAGACACAAATCTATTTGAAATCG
CAAAATGCAAGACTAGCGTGTCTGCTATTGAGATGAGCAATGACGGCACTCAATTTGTTG
TTACATCCCCTGATCGTAGGATACGGGTATTTTGGTTCAAAACTGGGAAACTAAGACGTG
TATATGATGAGTCCCTTGAGGTGGCACAAGATCTGCAGAAAAGTGATATCCCGATGTATC
GTCTTGATGCTATTGATTTTGGGCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAGACCG
AAAATGTTCCACAGCCTAATGCTGTATTTGATGAGAGCAGCAATTTTCTTATTTATGCTA
CCCTTTTGGGCATAAAGATTATAAATTTGCACACAAATAAGGTTTCAAGAATCCTGGGGA
AGGTAGAAAACAATGAACGTTTTCTGAGGATTGCTCTATACCAAGGTGATAAAGGGAATA
AGAAGGTTAGAAAAATTCCTTCAGTAGCTGCCAATGTCAATGACAGCAAGGAGCCTTTAT
CTGACCCAACGCTGCTATGCTGTGCCTTCAAGAAGCATCGAATATATCTCTTTAGTCGTA
GAGAACCTGAGGAGCCTGAAGACGCAACCAAGGGTAGGGATGTTTTCAATGAAAAACCCC
CACCGGAAGAGCTTTTGGCTGTATCAGATTTAGGGAAGACTGCTACAACATCACTCCCTG
ATGGTGATGCATACTTCTATGGGTGATATTCACTTGAGATTATATCCAGAAGAGTGTCCA
AAAACTGTGGAGAATTTCACTACCCATTGCCGGAATGGTTATTATGATAATCTCATATTT
CATCGTGTGATTAAAGGCTTTATGATTCAGACTGGAGACCCTTTGGGGGATGGCACTGGT
GGGCAATCAATCTGGGGAAGGGAGTTCGAAGATGAATTTCACAAAAGCTTGAGACATGAT
AGGCCTTTTACTCTTTCAATGGCCAATGCTGGACCAAATACCAATGGGTCCCAATTCTTT
ATCACAACTGTGGCAACTCCATGGCTAGACAACAAACACACAGTGTTTGGTAGAGTTGTG
AAAGGGATGGATGTTGTTCAGCAAATCGAGAAGGTCAAGACCGACAAGAATGACAAACCA
TATCAGGATGTGAAGATCTTGAACGTTACAGTTCCAAAGACATAAGCTCAAACAATTGGT
TTGACATTGTACGCATGAGGTTCTTCCACCCTTTGCAAGCCTGTGAAAGACAAATGTTCT
GAACTTTATGTGCTGCTGTGGTGCATCGAGTTGGTCCTTCAAACCTCAACCCAGAGGCAG
CACCATATTATTAGAAAGCACTGCCTTTGATGAGGTATGTGTTCCGAGTTTTAACTAGCT
TTCCCATCCATAACCCAAGGGCAATGGGACTGTAACATTTTTGCTGTACACGGGATTGGT
ATTGCAATTTAACAATGGAAAAAATGTAACGAGCCAGTTAGATGAGGATACATGGACGAT
TTTTCCATGCATGGGTGTAAGGGCGTAAGTTTTATTTTGACTAGCCACTGAATGCTGATA
CCAATTAGACTG

CDS

1512 bp

>Os08t0557500-01 Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein.
ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCC
GAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTG
GGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCCGGCTCCCGTGCCGCCGCGG
CCGAGGAAGAAGCGCCCGCTCCAGTTCGAGCAGGCCTTCCTCGACGCCCTGCCCTCCGCG
GCCATGTACGAGAAGAGCTATATGCATCGGGATGTCGTCACCCACGTCGCCGTCTCTCCT
GCTGACTACTTCATCACCGGGAGCGCAGATGGACATTTGAAATTTTGGAAGAAGAAACCA
GCTGGGATCGAATTTGCTAAACATTTTCGATCTCATCTCAGTCCCATTGAAGGCCTAGCT
GTGAGTGTTGATGGCCTACTTTGCTGCACGATCTCCAGCGATTGGTCTGTCAAGATATAT
GACGTTGTGAATTATGACATGATGTTCATGATGCGTCTCCCATTCGTTCCGGGTGCAATT
GAGTGGGTTTATCGACAAGGAGATGTTAAACCAAAACTCGCTGTTAGTGATCGTAATACA
CCTTTTGTTCACATATATGATACTCATTCTGGTTCAAACGATCCCATCATCTCCAAAGAG
ATTCATGCTGGCCCAGTAAAGGTTATGAAATATAACCATGTTCACGATGTTGTGATATCT
GCTGATGCCAAAGGACTCTTGGAATACTGGTCTCCGTCTACCCTCAAATTTCCAGAAGAC
GCGGTGAACTTTCGTTTAAAAACAGACACAAATCTATTTGAAATCGCAAAATGCAAGACT
AGCGTGTCTGCTATTGAGATGAGCAATGACGGCACTCAATTTGTTGTTACATCCCCTGAT
CGTAGGATACGGGTATTTTGGTTCAAAACTGGGAAACTAAGACGTGTATATGATGAGTCC
CTTGAGGTGGCACAAGATCTGCAGAAAAGTGATATCCCGATGTATCGTCTTGATGCTATT
GATTTTGGGCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAGACCGAAAATGTTCCACAG
CCTAATGCTGTATTTGATGAGAGCAGCAATTTTCTTATTTATGCTACCCTTTTGGGCATA
AAGATTATAAATTTGCACACAAATAAGGTTTCAAGAATCCTGGGGAAGGTAGAAAACAAT
GAACGTTTTCTGAGGATTGCTCTATACCAAGGTGATAAAGGGAATAAGAAGGTTAGAAAA
ATTCCTTCAGTAGCTGCCAATGTCAATGACAGCAAGGAGCCTTTATCTGACCCAACGCTG
CTATGCTGTGCCTTCAAGAAGCATCGAATATATCTCTTTAGTCGTAGAGAACCTGAGGAG
CCTGAAGACGCAACCAAGGGTAGGGATGTTTTCAATGAAAAACCCCCACCGGAAGAGCTT
TTGGCTGTATCAGATTTAGGGAAGACTGCTACAACATCACTCCCTGATGGTGATGCATAC
TTCTATGGGTGA

Protein

504 aa

>Os08t0557500-01 Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein.
MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPAPVPPR
PRKKRPLQFEQAFLDALPSAAMYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKP
AGIEFAKHFRSHLSPIEGLAVSVDGLLCCTISSDWSVKIYDVVNYDMMFMMRLPFVPGAI
EWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVIS
ADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEMSNDGTQFVVTSPD
RRIRVFWFKTGKLRRVYDESLEVAQDLQKSDIPMYRLDAIDFGRRMAVEKEIEKTENVPQ
PNAVFDESSNFLIYATLLGIKIINLHTNKVSRILGKVENNERFLRIALYQGDKGNKKVRK
IPSVAANVNDSKEPLSDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPEEL
LAVSDLGKTATTSLPDGDAYFYG*

5'UTR

chr08:27893370..27893443 (+ strand) : 74 bp

CDS

chr08:27893444..27893688 (+ strand) : 245 bp

chr08:27893775..27893860 (+ strand) : 86 bp

chr08:27894184..27894272 (+ strand) : 89 bp

chr08:27894435..27894674 (+ strand) : 240 bp

chr08:27894769..27894890 (+ strand) : 122 bp

chr08:27895345..27895420 (+ strand) : 76 bp

chr08:27895518..27895625 (+ strand) : 108 bp

chr08:27895707..27895883 (+ strand) : 177 bp

chr08:27896201..27896418 (+ strand) : 218 bp

chr08:27896555..27896681 (+ strand) : 127 bp

chr08:27896825..27896848 (+ strand) : 24 bp

3'UTR

chr08:27896849..27897049 (+ strand) : 201 bp

chr08:27897294..27897447 (+ strand) : 154 bp

chr08:27897539..27897635 (+ strand) : 97 bp

chr08:27898458..27898831 (+ strand) : 374 bp

FASTA

>Os08t0557500-01 class=Sequence position=chr08:27893370..27898831 (+ strand)
GGAGCAGAAG GTCTCGAGGA GTCGAGACTT CTCTCCCCCA AATCCCCAGA ACCCTAGCGG AGCTCCACCT CGAGATGGCG
ACGGCGAGCG ATGCGCCGGC GAGCTCCACG ATAACGACCG CCACGGACGA CGCCGAGGTG GAGCGCGACC AGGGCAACGG
CAATGGCGCC GTGTCAGCCG CACCCGCCGC CGTGGGGAAG GAGGCGGCGG CTGAGGAGGA GGAGATGATC GGCCCGGCTC
CCGTGCCGCC GCGGCCGAGG AAGAAGCGCC CGCTCCAGTT CGAGCAGGCC TTCCTCGACG CCCTGCCCTC CGCGGCCATG
TGAGTGTTCT CCTCGCCGTT TCAGGTTCGG ATTTGGTAGG GGGTGCGTCG GCTGGGAGGC TGACGGCCGT GGCTTGGTTT
TGCAGGTACG AGAAGAGCTA TATGCATCGG GATGTCGTCA CCCACGTCGC CGTCTCTCCT GCTGACTACT TCATCACCGG
GAGCGCAGAT GGTAATCTCT CGCGCTCACG TCTCTGCATC GTACCGTATT CAGTGTGCGA TACTAGTGGT TTGTGCCTTT
GTGGTAGTTT GTTAGCTTGT GGCAGCATGT GTTAGATTTC GGATGGTATC TTGTGGAAAT GTCAAGCCCT TCTACATAAG
GGATAGTCCT TCACTGAACC ATAATCACGG GCTTGATAGA CTTGCGTAAT AGTATTGGTT GAAAAACTTT TAGATCTATG
GATTGATCAA ATCCTGTGGT ATGATTCAAT AATAAGCTGA TTCATTTTCA TGTAATGGGA GCTTAATTAC CATCCTTTTC
TCCTCTCTAC CCAGGACATT TGAAATTTTG GAAGAAGAAA CCAGCTGGGA TCGAATTTGC TAAACATTTT CGATCTCATC
TCAGTCCCAT TGAAGGCCTA GCTGTGAGTG TTCAGATTCT TATATTGACT TCCCTAATCC AGGGAAAACA TTTGCATTCG
CAATATATAT TAGTCTATTT ATCTTGCTAG TTGCTACTCT TAGTCACAGC TCCTGCCTAT GGAACTATGA ACAACCTCAA
ATTATAGCGT GATTCAGTAA TGCAGGTGAG TGTTGATGGC CTACTTTGCT GCACGATCTC CAGCGATTGG TCTGTCAAGA
TATATGACGT TGTGAATTAT GACATGATGT TCATGATGCG TCTCCCATTC GTTCCGGGTG CAATTGAGTG GGTTTATCGA
CAAGGAGATG TTAAACCAAA ACTCGCTGTT AGTGATCGTA ATACACCTTT TGTTCACATA TATGATACTC ATTCTGGTTC
AAACGATCCC ATCATCTCCA AAGAGGTAAT CTGTTGTTGC TTTCTGTGTG TCGATGTGTA TTTCTTGTGA ATTAAAGTAA
CTAAATGATT CTTACTGCAT GAGCTGCCTC TTTATGCAGA TTCATGCTGG CCCAGTAAAG GTTATGAAAT ATAACCATGT
TCACGATGTT GTGATATCTG CTGATGCCAA AGGACTCTTG GAATACTGGT CTCCGTCTAC CCTCAAATTT CCAGAAGACG
CGTATGTTGT TTCTCTCTTG GAGTTATTTT CAACGTTTGT GTAGCTTGTG GTTTTGTCTT CCCAAAACAT TGCACTGAAC
CACCAAGTAC TTGAGCCATG ATTACACCTA CCATTTCCTT TTCTGTTAAG TCTGCAGCTG GAACAATCCT AGGTGCTAAT
TAATCAACGA ACCAGCTTTT TTTAAAAAAA GTTAGGTACT ATTATGTTTG GTGAAGATGC ACTTAACTTA AAATCTTTTC
TGATTCACTT TTGTTTCTTA TAATAACATA TTATCCTACT TTAGTATTTA TGGATTGTTT TTTCATTTCA CCTGTCACTC
TGGCAGTGTA TAAGCTCTGG GTTGGTTCCT TTTGTAATGG CTATATTTAT ATGTGCTAAC AGCTGTTCTG TCCCTCTTGG
TGAATGCATC AATCCATCAT CTTATCAATG CATATTGCTT TTGTTTTTTG TGCAGGGTGA ACTTTCGTTT AAAAACAGAC
ACAAATCTAT TTGAAATCGC AAAATGCAAG ACTAGCGTGT CTGCTATTGA GGTACTTCTT CTATTTGATT CTCAAGTTAT
TTGCATTTGT TGCTTCATTA TTGATAGAGC TACAGGATTA CTCTGATAAA CGAGCTTGTG TTGTCCAGAT GAGCAATGAC
GGCACTCAAT TTGTTGTTAC ATCCCCTGAT CGTAGGATAC GGGTATTTTG GTTCAAAACT GGGAAACTAA GACGTGTATA
TGATGAGTCC CTTGAGGTAA GAAATTCCAT CTGTACAATG CATGGTACAG ATAAATATGT TCTGTTATAA TCCCCAACTG
AATGCTGTCA ATTATAGGTG GCACAAGATC TGCAGAAAAG TGATATCCCG ATGTATCGTC TTGATGCTAT TGATTTTGGG
CGAAGAATGG CTGTTGAGAA GGAAATAGAA AAGACCGAAA ATGTTCCACA GCCTAATGCT GTATTTGATG AGAGCAGCAA
TTTTCTTATT TATGCTACCC TTTTGGGCAT AAAGGTATGC TATTTTTTTA CTGCACATCT TTTCTTTTAT GTAGTATGTG
TTTGATATCA TTATATGTAC TTCAGTTATT TATATAATTA TTTTTTATGT TCGGAATGAT AAATGTTGCT CAAGAAAATA
TTTGTCCTTG TGGAATTCCA TCTTATGGAT CAGCTGCTAG TTAAACAGCA TGTTTTGTAT TAGCTTTCTA GCAGCTTGTT
TTGTATTCAT TATGCTCCTA TCTAGCTGTT GAGTTCATGT AAATATCTGG CATGTTGCTA TTGTTGAACA TATTTCTGTA
TGATTAATTC TGATTTCCCA TAAATATGCA GATTATAAAT TTGCACACAA ATAAGGTTTC AAGAATCCTG GGGAAGGTAG
AAAACAATGA ACGTTTTCTG AGGATTGCTC TATACCAAGG TGATAAAGGG AATAAGAAGG TTAGAAAAAT TCCTTCAGTA
GCTGCCAATG TCAATGACAG CAAGGAGCCT TTATCTGACC CAACGCTGCT ATGCTGTGCC TTCAAGAAGC ATCGAATATA
TCTCTTTAGG TACATCAATT CAATGATCTT TGGATAGGTC GTATTGGCTG ATTCCGCATG CTGCTTCTGT AGACTCCTTT
CTCTCCAGAT GGTTTTTCTT AAATTTTAAT ATCCCGCTTC TCAATCCTCT TTTTTCATTA TACAGTCGTA GAGAACCTGA
GGAGCCTGAA GACGCAACCA AGGGTAGGGA TGTTTTCAAT GAAAAACCCC CACCGGAAGA GCTTTTGGCT GTATCAGATT
TAGGGAAGAC TGCTACAACA TCACTCCCTG ATAATTTGGT ATGTTTTCTC AATCATTTCT AAAAATGGTA ATTTGCTACT
ATTGATTTTA TGGAAATTTG ATATCTTGGT GGGATAGTCT TTGAACATTT TTCCTTTTTA GGTCGCATTT ATTTACATGA
GTATTTCCTA TTTCAGGTGA TGCATACTTC TATGGGTGAT ATTCACTTGA GATTATATCC AGAAGAGTGT CCAAAAACTG
TGGAGAATTT CACTACCCAT TGCCGGAATG GTTATTATGA TAATCTCATA TTTCATCGTG TGATTAAAGG CTTTATGATT
CAGACTGGAG ACCCTTTGGG GGATGGCACT GGTGGGCAAT CAATCTGGGG AAGGGAGTTC GAAGATGAAT TTCACAAAAG
GTATATAAGT TGTATGCCTT TTCCTGTTTT TCTTTTCTCA TTTGCAGAAA ACAATGCAGT TTTTCATCTT ATGTACCGTT
TAGATGACAG ATGTCTATGC AAGGTCCAGG AAAGATATCT GTATAGTCAT GTAAATTTTG CATGCACTGT GCTTATTGTT
GTTGAAGAGA ACACAATCCA TATGAATAAT CCTATTTGAA TATGCTTATA GTGACAACTG ACAGCTATGG CGGCTATCTT
GCAGCTTGAG ACATGATAGG CCTTTTACTC TTTCAATGGC CAATGCTGGA CCAAATACCA ATGGGTCCCA ATTCTTTATC
ACAACTGTGG CAACTCCATG GCTAGACAAC AAACACACAG TGTTTGGTAG AGTTGTGAAA GGGATGGATG TTGTTCAGGT
ACCAGCCTTT TTGACCAACT TAGTGACTGT GTGTGAATTT TCATATCCTT TATTGTGCTT CCTAATATGT TTTGTTTTAA
ACTTAAAAGC AAATCGAGAA GGTCAAGACC GACAAGAATG ACAAACCATA TCAGGATGTG AAGATCTTGA ACGTTACAGT
TCCAAAGACA TAAGCTCAAA CAATTGGTCA GTTTTTCTGC TCTTGATACC ATAATCTAAC CTCATAATTC ATTTTGTTTT
GGGGATTGTC TTGAACAAGT GACTTTGCTT GGTGTTTTCC TACAAAATAC ATACAATGCA AACTAATCCT TAACTGGCAC
AGATGTCTTG TGAACATTAA TTTTTTTAAA TTGTTCCCtt ttctaaagtt acctactacc tccatccaca aatataagca
tttctagcat ttgaaatttg tacatttctg gagtactact TTCCCAATCC AACCACCGCT GCATTTATTG CTCACTTAGT
TGTATTTCTA GGCATGGTAT TTTCCCTATC AAGTAGAGTC CCAGGGGCAT CAAATTAATT TCACCTAAAC CTTATTTTCT
GTTAAAATCC TAGAAGTGAT TATATTTGTG GATGGAAAGA ATATAGTACA TACATTAAGA TAATACTGCC AGTTGCAACA
ACATTAAGAA TATAGCCTGC TTTACTTATG TGGTTATCAA AGCTAATTTC ATAATGGTTT GTTGGGTTAG ACCTAAATAC
TTCTAAATTT ACTTTAGGAG GTCATCTTTG CTAGACAACC TGTAGGAAAA CCAAGCATCC AGTGACCAGT GGTGCTCTTT
ATTATTACCT TGTGTTATCC CCTGTTTGCC ATGGGATTGT TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT
TTTCATGTGG ACTGTATGAA GAACGGTTCC ATTTCTTTAT CACCAGTTTC ATGTTGACTG TATGGAGAAC GGTTCCATTT
CTTGTATCAC CAGTGCTCTC ATGTGGTCAT TTCGTGTGCC TTCTGCAGGT TTGACATTGT ACGCATGAGG TTCTTCCACC
CTTTGCAAGC CTGTGAAAGA CAAATGTTCT GAACTTTATG TGCTGCTGTG GTGCATCGAG TTGGTCCTTC AAACCTCAAC
CCAGAGGCAG CACCATATTA TTAGAAAGCA CTGCCTTTGA TGAGGTATGT GTTCCGAGTT TTAACTAGCT TTCCCATCCA
TAACCCAAGG GCAATGGGAC TGTAACATTT TTGCTGTACA CGGGATTGGT ATTGCAATTT AACAATGGAA AAAATGTAAC
GAGCCAGTTA GATGAGGATA CATGGACGAT TTTTCCATGC ATGGGTGTAA GGGCGTAAGT TTTATTTTGA CTAGCCACTG
AATGCTGATA CCAATTAGAC TG

Locus: Os08g0557500

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Locus: Os08g0557500

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