Locus
Os09g0456100
Description
Hypothetical conserved gene.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
REM5.3
CGSNL Gene Name
REMORIN 5.3
Oryzabase Gene Symbol Synonym(s)
OsREM5.3
Oryzabase Gene Name Synonym(s)
Remorin 5.3, remorin group 5 member 3
Transcript Evidence
AK073880 (DDBJ, Best hit)
Protein Evidence
B8BCK7 (UniProt)
Literature
Note
Manual Curation
Functional domain (InterPro)
Remorin, C-terminal (IPR005516)
Full-length cDNA
J033071G17 (Online Clone Ordering)
Expression Databases
TENOR (Os09t0456100-02)
RiceXPro (AK073880)
Others
Oryzabase (20277)
KEGG (Os09t0456100-02)
Transcript |
2316 bp |
>Os09t0456100-02 Hypothetical conserved gene. AGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGA AGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGA ATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAA GCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCT TTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATC ATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTC ATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGG TAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCC CTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGA GAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCC TGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACA TTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGA GAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCAT TGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCG TCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGT ACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTT GCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGT CAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTT CTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAA GAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAA GACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGT TGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGC AGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGAT TTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGC AAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGG CCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAGTGTCATGTAGTTTA AGAAGGAACAGGACTTAAAGTAATTCTTCGTGTTATCAACACGCTCGTGTTGACTTAGTG AAGTTCAGAGATTTACAGAATAAAGATGATCCAGCAGATGGAAATTATCCCCCCTTGAAT TTTGACAAGATGCTGCTGCAACAATGGGGGACCATGCATTATCATGATATAGATTTCTAC AGTTCTGCTTTGTGTTAGTTTCGATTCTGCCATGGGGGGACAAGAGAAAATGGTGCCACG AAGGAAAGGTGAAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAAT GATAATTGATAAGGTCCTCCTCTATCATTCATTACCCATTACCAACATTCTAGATGCTAT GAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAATTCCAACGGA TAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTG GAAAACTCTACTGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTA TGCTACATTTGCATACACAGTTACAATAGCATGTGTTGGAGAAAAATATAGGAATACAGG AAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAGAACAACTCT CCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAA TGTTGATAAATGATATTGCCATCGCAATTTTTTTTT
CDS |
1545 bp |
>Os09t0456100-02 Hypothetical conserved gene. GCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAA GGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAA TGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAG CAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTT TCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCA TTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCA TCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGT AACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCC TCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAG AAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCT GGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACAT TTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAG AAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATT GGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGT CGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTA CAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTG CGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTC AGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTC TCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAG AAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAG ACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTT GAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCA GCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATT TGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCA AACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGC CAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAG
Protein |
514 aa |
>Os09t0456100-02 Hypothetical conserved gene. AFAEPHDEEEGDEVLCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLK QRPASLDFGSGSPGFNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRS SVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLE KTSFAPARRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGE KDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASV QDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCF SDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKV EREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAA NQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHAF*
5'UTR
chr09:17184097..17184097 (+ strand) : 1 bp
CDS
chr09:17184098..17184215 (+ strand) : 118 bp
chr09:17184297..17185082 (+ strand) : 786 bp
chr09:17185394..17185745 (+ strand) : 352 bp
chr09:17186118..17186199 (+ strand) : 82 bp
chr09:17186407..17186613 (+ strand) : 207 bp
3'UTR
chr09:17186614..17186631 (+ strand) : 18 bp
chr09:17187564..17188315 (+ strand) : 752 bp
FASTA
>Os09t0456100-02 class=Sequence position=chr09:17184097..17188315 (+ strand) AGCATTCGCC GAGCCACACG ACGAGGAGGA GGGGGACGAG GTGTTGTGTG GGGTGGTGGA AGGGGACTGG GCACAGCTGC AAGAACCAAC CAAGAGTCCG GCAGACCGTA CCACCGGAGG TACGAATTCT GAAACTTTGC ATGGAAAAAT TTAGATGGTA CTCGGTTGTT CATTTTGTAT GCTTGTGTGG TGCTCGACAG AATGCCTGTA CCAGCGGCGC CGGTCAGAAG CTGTTCTTTT GCAGGGTAGG AAGGGGTTGA AGCAACGGCC AGCCTCTCTG GACTTTGGCA GCGGCAGCCC CGGGTTCAAT GGAGCCCCTC TTTCTCCGGG CTTTGTGGTT GGGGGTGTGG GTTTGATGAA CAAGGGTCTT GTGTCATCAT CATTCATCAG ATCAGACGTT TTTCCTAGTC CCAGGACACC GAACTATCGG CGGCATCGTT CATCAGTATT TGGTTACCAA AAGGGGTGGA GCTCTGAGAG AGTACCGCTT GCTTCCAAAG GTAACAGGAG GTACCCAGGC AGCAGCATGG CATTTCCCTT CAGCAATGGG AGGACATTGC CCTCCAAATG GGAGGATGCA GAGAGATGGA TCTTCAGTCC GAATTCGAGT GACGTGCTCG AGAAGACTTC ATTTGCTCCT GCTCGGCGAC CAAAGTCCAA AAGTGGTCCA TTAGGGCCTC CTGGAAAATT TGGTGGACAA TACTCATCTG TGTCATTGCT TGACAATGGG AGAGTTGGAC ATTTGACAGC AAACTCGCCT TTCTTGGCTG GAGTACTGAT ACCAGAACAT TATTGTGGAG AGAAAGATAA CATTGGGAGG TATATGAGCA GAACAGCTGG TGAGGAGGCC AGCATTGGCA TTGGAGGCAA GTCTTGTCTG GCAAATGGTG GGTCTCATGC TACTCAATAT AACAGAGTTC GTCGACGACT GGATACTGCG ATTGAGTCAT CACCTTCATT GCCTAGCACC CAAGCGTCTG TACAAGGTAT TATAAATTAT TCTCGTTTGC AATTCATTCC TTTTCTGCCT GCCTTTCAGT TTTGAGTTGA TCCATAATTG TTCTGAAGGC AGCCTGGTGT TTTGAGGTAT CCTCTCTATT TGCCAAAGCA TCTCAATACT GTGGAGTTTC TCATGGCCTT GCCACTGTAA ATGATGTTTT TTTTGTCAAT TAGTGTTTTG ATAGCTGGTT TTATCCTTGG ATCGTCAACA TAACATCATA GAAAGTTAGT CTTATTCTGT ACACAACAGA TCAAGTCAGT CTTATGTTTG TACCTTCTTG TTTGGTTTCT GATTCAGATG AACAGGTTGG AATCACAGAA GAGTCAGCCT CCATTATCAC CCCTATAATT TTGCGGAAGG ATGCGGCAAC TCAAACAAGC CCAAATCTAA GTCGGTCATC TTCGCCCAGT GTCAGTACTC CATTTATCCA TTTGCTTACG ACACACCAAG TCAGAGAAAA GGAGAATTGT TTCTCTGATG TTATCAGGGA TGTGCACATG GACGATCGAG TGACTCTTAC CAGGTGGTCC AAGAAACATG TTACACGAGC ATCTAGCAAG AACTCAACAA ATGTTATAGA TGTGAAGAAA AAGACAGTGG AGTCTAAGTC TTCTTCCTGG GAATTAACAG AAGCAAAATC CATATCAAAG TAAGAGACCA CCAATTGTTT TGGTCCTACA GATGAGTTTG AGTAGCATTT TCTTCGGACA TAACTTTATT ATGTTGAACC ACTAAATTAC TAACAGAAGC AAAATCCATA TCAAAGTAAG AGACCACCAA TTGTTTTGGT CCTTCAGATG AGTTTGAGTA GTATTTTCTT CAGACATAAC TTTGTTACGT TGAACCACTA AATTACTACT ATAAGACTTG AAAGATTAAT TTAGGGAAAG AATGCTGCAT GTCTTTCTTA TCTGTTATAG TACGCAAGTT ATCCAATGCT TTTAATATTT TCCAAAAACT TGCAACTTAA ATTTACACCA TCAAGCCGTG AAATGCTAAT CACTCCATGC AATGTTAAAA GGGTTGAGCG AGAGCAAGAA AAAATTACTG CTTGGGAACA CCTCCAAAAA GCCAAGGCTG AGGCAGCAAT CCAAAAGTTA GTGGTATGTG TGCTCTTTTC TTTACTTCTT TACTTCTAAC AGATTTATAG GTCTGTTTTA TCGGACTTAT TTATGTTGTT GTAAAGAGCC TATATACTGT ATACACGACC AAAATTCTCA AAGTTAAATC AACGCTCATG TAAATCACTG GATTCTTTTC CACTGATGTA CATTTGACCT TACACTATAC GCATGCTTTT GTTATGTCAG ATGAAAATCG AGAAAAAGAG ATCATCTTCA CTGGACAAGA TTTGGAACAC CCTCAGGTCT GCACAAAGAA GAGCACAGGT AATGCGTGAA ACTGCAGCAG CAAACCAGGA TGAGCAATCT TCCGGGAAGG CTAAAAGGAC ATCACACCTT AATAAGAACG GCCAGATCAG CTCTCTGAGT GGCTGCTTCA CTTGCCATGC CTTCTAGTGT CATGTAGTTT AAGAAGTGAG TAAGTTACAT TCTGACTCCT GTGATACTTT AAATGTTTTT TGATGAATTC TGCAGTGTTT CCTGTTTTAA TAACATTATA CCTGTTAGGA TTTTTTTCAC AGTACACCAA AATTGTTTAG ATAGTTCATT TAACACTGGT CCAACGCTTG ATAATACTAT TACCTCCTAC AGGATCTAAC TGTTAACATT ACAGCAGTAT CATTATTGAG ATCTAACAGT TGCAACTGGG AGAATTATGT AAAGAATAAA TTCCCCAGTA CCCTCTTCTG AGTATCATCG AGGGGAACAA TTACATTTAT TTTAGAGCAC CGATGATGCG TGCATATTAT TTTAGTTTAT TTCACCTACC TTGATGTAGA TATTTTTTTT TTTGTAACTG CATACCATTC ACTCAAATAA CTTTTCAGAA TTATGTTATG CTCTATGACA TATTCCATGT TTCAAACCAA TTATTCAGAT TACGTAGATC CTAAAGGTAT ACCTGTATTC ATAAACTTCT TCGATGCAAC TAGCGGATTG ACCTTTAGTG GAGGGGTACC AGCTTAGGTT GTACAGTCAG CATTATCCTA CTAAATTGCC TCAAATTTAT TTAGGTCCTT CTTAAATAAG TAATCATACA CATCTGTCTT CTAATTAACA TTGATAGAAT TCTTGTTAGT ATGCTGAAGA CGTGAACAGT TTGCTACTGT TTACCTTGTA ATGTTTTGAG GAAAATCGAC AATATTATGA TAACAAAAAG GGGTCAATTA TTAGCATGCG TACTAATATA TTTCCTGTAA TCTGTGGCTG TCTGATACCA CATGTTTACC CTTTTACTGT TGATGCCCCA CAACTTCCAT ATCGGCTCAA TAATTAGGCA ACATTTCAGT GAACCAAATA TTCCATGCAT GCTTATGTTT GTACATCAAA ACTTTTGTCA TGTTCAGGGA ACAGGACTTA AAGTAATTCT TCGTGTTATC AACACGCTCG TGTTGACTTA GTGAAGTTCA GAGATTTACA GAATAAAGAT GATCCAGCAG ATGGAAATTA TCCCCCCTTG AATTTTGACA AGATGCTGCT GCAACAATGG GGGACCATGC ATTATCATGA TATAGATTTC TACAGTTCTG CTTTGTGTTA GTTTCGATTC TGCCATGGGG GGACAAGAGA AAATGGTGCC ACGAAGGAAA GGTGAAATTC TTCTGCATAC ATCCCATGTG CCTGATTGAT ATCTTAGCAC AATGATAATT GATAAGGTCC TCCTCTATCA TTCATTACCC ATTACCAACA TTCTAGATGC TATGAGTTTG TGTGCGATGA AAACAAAGCA GATATGTATC ATTTGCACCA CAATTCCAAC GGATAGATAA GAAGGGAATG TTTCAGTCAG AGGGAATACA GTGCCTTACT GTGATTCATG CTGGAAAACT CTACTGGATT GTGAAAGGGA ACCAGGTGGA ATGCAATAGA TTTAGCTAGC GTATGCTACA TTTGCATACA CAGTTACAAT AGCATGTGTT GGAGAAAAAT ATAGGAATAC AGGAAAATAG AGATTCTGTT TGAATTTCAT GGCAATTTGA CAAGCTCTTC GCAGAACAAC TCTCCCATTT CTGTAATGAG CTGTTTCTTG TAATTCCTAT TGCAACACAT AGGCGTTACT GAATGTTGAT AAATGATATT GCCATCGCAA TTTTTTTTT
Locus: Os09g0456100
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Locus: Os09g0456100
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