Locus

Os10g0112100

Description

Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height

RAP-DB Gene Symbol Synonym(s)

OsFWL5, OsPcr1, PCR1, OsPCR1

RAP-DB Gene Name Synonym(s)

FW2.2-like 5, Plant cadmium resistance 1

CGSNL Gene Symbol

PCR1

CGSNL Gene Name

PLANT CADMIUM RESISTANCE 1

Oryzabase Gene Symbol Synonym(s)

OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1

Oryzabase Gene Name Synonym(s)

FW2.2-like 5, fruit-weight 2.2-like 5, Plant cadmium resistance 1

Transcript Evidence

AK108480

Protein Evidence

Q33BF6

Literature

PMID: 25854544

PMID: 23793979

Note

Manual Curation

December 2, 2016

Functional domain (InterPro)

PLAC8 motif-containing protein (IPR006461)

Full-length cDNA

002-143-F03 (Online Clone Ordering)

Expression Databases

TENOR (Os10t0112100-01)

RiceXPro (AK108480)

Others

Oryzabase (13474)

KEGG (Os10t0112100-01)

Transcript

781 bp

>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height
ACTTAAATCACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAAC
TTCTACACGGCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCG
CCGGAGCCGGTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGT
GTGGTGTCGTGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGAC
TGCGCCGACGACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGC
CAGATCGCAGAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTAC
TGCCTGGTGTTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGC
GCTCGCCTCCGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACC
TTCTGCTGCCAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCAC
GACCCTAACCTTGGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACAC
CAAGCGATGGAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCG
ACCAAACAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTAT
AAAGTGGCAATACATATATAGATGTGTGACGCTTATTTTATTTTATAAACATATTTTTTT
T

CDS

561 bp

>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height
ATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCGGTG
ACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCGTGC
CGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGACGAC
TGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCAGAA
ATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTGTTC
CACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTCCGG
GCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGCCAG
ACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAACCTT
GGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATGGAA
GGAATGACAACTCCCTCATAA

Protein

187 aa

>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height
MYPPDPSKSGESSAAAPEPVTGIPVGMFYPAPPMERVVSCRMAPAAGGAWTTALCDCADD
CNTCCMACWCPCIPVGQIAEIVDRGSSSCALNAVLYCLVFHVSAGMCQWVYSCAYRARLR
AAYDLPETPCSDCLVTFCCQTCSIAQMHRELKNRGHDPNLGWEVNSRRTMMTPPQHQAME
GMTTPS*

5'UTR

chr10:826238..826309 (- strand) : 72 bp

CDS

chr10:826048..826237 (- strand) : 190 bp

chr10:825809..825880 (- strand) : 72 bp

chr10:825463..825681 (- strand) : 219 bp

chr10:824983..825062 (- strand) : 80 bp

3'UTR

chr10:824835..824982 (- strand) : 148 bp

FASTA

>Os10t0112100-01 class=Sequence position=chr10:824835..826309 (- strand)
ACTTAAATCA CATCTCAGGG ACAGCAGGTA GCCATCCATT AGCTAGCTAG TCAAATTAAC TTCTACACGG CCATGTATCC
CCCTGATCCG TCCAAGTCCG GCGAGTCGTC GGCGGCGGCG CCGGAGCCGG TGACCGGGAT CCCCGTCGGC ATGTTCTACC
CTGCTCCGCC GATGGAGCGT GTGGTGTCGT GCCGCATGGC GCCGGCGGCT GGAGGGGCGT GGACCACCGC CCTCTGCGAC
TGCGCCGACG ACTGCAACAC CTGTAAGCTT TCTTTTTCTT CTTTAAGCAA ATTAGTTAAT ATCATTATTA ATTAGCAGTT
AGCCCATACA TATCAGCTTA ATTATCATGC TCCAAGTCTG TATACAACGA TTAATTATAT ATAATCTTTA TGAAATGAAT
TAATTAACGG ATGCATATAT ATGCTGCAGG TTGTATGGCG TGCTGGTGCC CGTGCATCCC TGTCGGCCAG ATCGCAGAAA
TCGTCGACAG GGGCTCATCA TGTAATTGAT TAACCTCATC GACTCAAATT CTCTTATCAT TAATATGATT TTACTGTGCA
GATCGATGCT GTTTGAAATT CCCCCAATTT TCATAATTTC TCAAATAGAT CCTGTACGTT TTGCACAGCG TGCGCGTTGA
ACGCGGTGCT GTACTGCCTG GTGTTCCACG TGTCGGCGGG GATGTGCCAG TGGGTGTACT CGTGCGCCTA CCGCGCTCGC
CTCCGGGCGG CGTACGACCT GCCGGAGACG CCCTGCTCCG ACTGCCTCGT CACCTTCTGC TGCCAGACCT GCTCCATCGC
ACAGATGCAC CGTGAGCTCA AGAACCGCGG CCACGACCCT AACCTTGGTA CGAGTATATT ATATTCTCTC TCTATCACCT
CTCAAACTCA ACTTTACATT GTATTTCCTA CTTCCAGTAG CTCAATCGTA CATCCATCTT ATTACAtaag tttaatgata
taatcataca tccatttcat ataagtcaaa aaaaagtttc ttcaacatat agtttttagc ttaaaagtgt aagggtgact
tatgacttta aaaaaatcaa acagaaaaaa atatctttgt ttaggtttag atttttgtga tcacagactg atttataagt
ctaaacaaga gggTCTAATA AGATATATAT TCCGATCTTC CAATCTTAAA AAAATTAGTA ACTTGTAACT CATTAATTCA
CTCAATGTGT TTAATTAATT TGTACTAATT AATGTGGGGT GATGAAGGAT GGGAGGTGAA CTCGCGGAGG ACGATGATGA
CTCCTCCCCA ACACCAAGCG ATGGAAGGAA TGACAACTCC CTCATAACAA CTACTCATCA TCACCTCTCG ATCGACCAAA
CAATACATAC ACACGATATA TAGCTATTAC AAGCATGTAC ACCCTTTGAT TTATAAAGTG GCAATACATA TATAGATGTG
TGACGCTTAT TTTATTTTAT AAACATATTT TTTTT

Locus: Os10g0112100

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

Link to RiceXPro

Graph view ()

Locus: Os10g0112100

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

Link to RiceFREND

MR list ()

HyperTree ()