Locus
Os10g0112100
Description
Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height
RAP-DB Gene Symbol Synonym(s)
OsFWL5, OsPcr1, PCR1, OsPCR1
RAP-DB Gene Name Synonym(s)
FW2.2-like 5, Plant cadmium resistance 1
CGSNL Gene Symbol
PCR1
CGSNL Gene Name
PLANT CADMIUM RESISTANCE 1
Oryzabase Gene Symbol Synonym(s)
OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1
Oryzabase Gene Name Synonym(s)
FW2.2-like 5, fruit-weight 2.2-like 5, Plant cadmium resistance 1
Transcript Evidence
Protein Evidence
Literature
PMID: 25854544
PMID: 23793979
Note
Manual Curation
December 2, 2016
Functional domain (InterPro)
PLAC8 motif-containing protein (IPR006461)
Full-length cDNA
002-143-F03 (Online Clone Ordering)
Expression Databases
TENOR (Os10t0112100-01)
RiceXPro (AK108480)
Others
Oryzabase (13474)
KEGG (Os10t0112100-01)
Transcript |
781 bp |
>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height ACTTAAATCACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAAC TTCTACACGGCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCG CCGGAGCCGGTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGT GTGGTGTCGTGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGAC TGCGCCGACGACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGC CAGATCGCAGAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTAC TGCCTGGTGTTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGC GCTCGCCTCCGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACC TTCTGCTGCCAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCAC GACCCTAACCTTGGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACAC CAAGCGATGGAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCG ACCAAACAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTAT AAAGTGGCAATACATATATAGATGTGTGACGCTTATTTTATTTTATAAACATATTTTTTT T
CDS |
561 bp |
>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height ATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCGGTG ACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCGTGC CGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGACGAC TGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCAGAA ATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTGTTC CACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTCCGG GCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGCCAG ACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAACCTT GGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATGGAA GGAATGACAACTCCCTCATAA
Protein |
186 aa |
>Os10t0112100-01 Member of the PLAC8 domain-containing protein family, Maintenance of metal ion homeostasis and grain weight, Negative regulation of plant height MYPPDPSKSGESSAAAPEPVTGIPVGMFYPAPPMERVVSCRMAPAAGGAWTTALCDCADD CNTCCMACWCPCIPVGQIAEIVDRGSSSCALNAVLYCLVFHVSAGMCQWVYSCAYRARLR AAYDLPETPCSDCLVTFCCQTCSIAQMHRELKNRGHDPNLGWEVNSRRTMMTPPQHQAME GMTTPS*
5'UTR
chr10:826238..826309 (- strand) : 72 bp
CDS
chr10:826048..826237 (- strand) : 190 bp
chr10:825809..825880 (- strand) : 72 bp
chr10:825463..825681 (- strand) : 219 bp
chr10:824983..825062 (- strand) : 80 bp
3'UTR
chr10:824835..824982 (- strand) : 148 bp
FASTA
>Os10t0112100-01 class=Sequence position=chr10:824835..826309 (- strand) ACTTAAATCA CATCTCAGGG ACAGCAGGTA GCCATCCATT AGCTAGCTAG TCAAATTAAC TTCTACACGG CCATGTATCC CCCTGATCCG TCCAAGTCCG GCGAGTCGTC GGCGGCGGCG CCGGAGCCGG TGACCGGGAT CCCCGTCGGC ATGTTCTACC CTGCTCCGCC GATGGAGCGT GTGGTGTCGT GCCGCATGGC GCCGGCGGCT GGAGGGGCGT GGACCACCGC CCTCTGCGAC TGCGCCGACG ACTGCAACAC CTGTAAGCTT TCTTTTTCTT CTTTAAGCAA ATTAGTTAAT ATCATTATTA ATTAGCAGTT AGCCCATACA TATCAGCTTA ATTATCATGC TCCAAGTCTG TATACAACGA TTAATTATAT ATAATCTTTA TGAAATGAAT TAATTAACGG ATGCATATAT ATGCTGCAGG TTGTATGGCG TGCTGGTGCC CGTGCATCCC TGTCGGCCAG ATCGCAGAAA TCGTCGACAG GGGCTCATCA TGTAATTGAT TAACCTCATC GACTCAAATT CTCTTATCAT TAATATGATT TTACTGTGCA GATCGATGCT GTTTGAAATT CCCCCAATTT TCATAATTTC TCAAATAGAT CCTGTACGTT TTGCACAGCG TGCGCGTTGA ACGCGGTGCT GTACTGCCTG GTGTTCCACG TGTCGGCGGG GATGTGCCAG TGGGTGTACT CGTGCGCCTA CCGCGCTCGC CTCCGGGCGG CGTACGACCT GCCGGAGACG CCCTGCTCCG ACTGCCTCGT CACCTTCTGC TGCCAGACCT GCTCCATCGC ACAGATGCAC CGTGAGCTCA AGAACCGCGG CCACGACCCT AACCTTGGTA CGAGTATATT ATATTCTCTC TCTATCACCT CTCAAACTCA ACTTTACATT GTATTTCCTA CTTCCAGTAG CTCAATCGTA CATCCATCTT ATTACAtaag tttaatgata taatcataca tccatttcat ataagtcaaa aaaaagtttc ttcaacatat agtttttagc ttaaaagtgt aagggtgact tatgacttta aaaaaatcaa acagaaaaaa atatctttgt ttaggtttag atttttgtga tcacagactg atttataagt ctaaacaaga gggTCTAATA AGATATATAT TCCGATCTTC CAATCTTAAA AAAATTAGTA ACTTGTAACT CATTAATTCA CTCAATGTGT TTAATTAATT TGTACTAATT AATGTGGGGT GATGAAGGAT GGGAGGTGAA CTCGCGGAGG ACGATGATGA CTCCTCCCCA ACACCAAGCG ATGGAAGGAA TGACAACTCC CTCATAACAA CTACTCATCA TCACCTCTCG ATCGACCAAA CAATACATAC ACACGATATA TAGCTATTAC AAGCATGTAC ACCCTTTGAT TTATAAAGTG GCAATACATA TATAGATGTG TGACGCTTAT TTTATTTTAT AAACATATTT TTTTT
Loading...
Loading...