Locus
Os10g0147400
Description
AUX1/LAX family member, Auxin influx transporter, Regulation of primary root and root hair development, Phosphate starvation response
RAP-DB Gene Symbol Synonym(s)
OsAUX4
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
CGSNL Gene Name
Oryzabase Gene Symbol Synonym(s)
OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4
Oryzabase Gene Name Synonym(s)
like aux1-4, related to AUX1-4, auxin transporter 4
Transcript Evidence
Protein Evidence
Literature
PMID: 34110093
Note
Manual Curation
June 11, 2021
Functional domain (InterPro)
Amino acid transporter, transmembrane domain (IPR013057)
Experimentally confirmed subcellular location
plasma membrane (GO:0005886)
Full-length cDNA
J033089L08 (Online Clone Ordering)
J033105O21 (Online Clone Ordering)
Expression Databases
TENOR (Os10t0147400-01)
RiceXPro (AK102295)
Others
Oryzabase (11919)
KEGG (Os10t0147400-01)
Transcript |
2105 bp |
>Os10t0147400-01 AUX1/LAX family member, Auxin influx transporter, Regulation of primary root and root hair development, Phosphate starvation response AACACACCACACACACCCACACTGGCAGCAGCTCATACACATAGCTAGCTCAGCTGAGAC ACACACACACACAGTGAGTAGTTCAGCTCAAAGCTAGCATCAGCAGCAGAGCTAATTAAC AAACATGGCGTCCGGGAGCAGCGGCGGCGGCTACGCGGACGAGAAGGGGCCGGGGGCGGC GACGATGCAGGCGCTGGGGCTGCAGCAGCAGCACGGCGGCGGCGGAGAGGTGGAAGAGGA GTCGTCGGAGATGGGGGAGAAGACGGCGGCGAGGACGCGGCTGTCGGGGCTGCTGTGGCA CGGGGGGTCGGCGTACGACGCGTGGTTCAGCTGCGCGTCGAACCAGGTGGCGCAGGTGCT GCTGACGCTGCCCTACTCGTTCGCGCAGCTGGGCATGGCCAGCGGCCTCCTCTTCCAGCT CTTCTACGGCCTCCTCGGCAGCTGGACCGCCTACCTCATCAGCATCCTCTACCTCGAGTA CCGCACCCGCAAGGAGCGCGACAAGGTCGACTTCCGCAACCACGTCATCCAGTGGTTTGA GGTGCTGGATGGGCTACTGGGGAGGCACTGGAGGAATGTGGGACTGGCCTTCAACTGCAC GTTTTTGCTGTTCGGGTCGGTGATCCAACTGATCGGGTGTGCCAGCAACATCTACTACAT CAACGACCATCTGGACAAGCGGACATGGACGTACATCTTCGGCGCCTGCTGCGCCACCAC CGTCTTCATCCCGTCATTCCACAACTACCGCATTTGGTCCTTCCTCGGCCTCCTCATGAC CACCTACACCGCCTGGTACATCGCCGTCGCCTCCCTCATCCACGGACAGGTGGAGGGTGT GGCGCACTCTGGGCCCACAAGCATCGTGCTCTACTTCACGGGGGCCACCAACATCCTCTA CACCTTCGGGGGCCACGCTGTCACCGTGGAGATAATGCACGCGATGTGGCGGCCGCAGAA GTTCAAGGCGATCTACCTGCTGGCGACGGTGTACGTGCTGACGCTGACGCTGCCGTCGGC GTCGGCGGCGTACTGGGCGTTCGGGGACGCGCTGCTGACGCACTCGAACGCGCTGGCGCT GCTGCCGCGGACGCCGTGGCGCGACGCCGCGGTGGTGCTCATGCTCATCCACCAGTTCAT CACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTCTGGGAGAAGCTCGTCGGCCTCCA CGGCTGCCCCTCCCTCTGCAAGCGCGCCGCCGCCCGCCTCCCCGTCGTCCTCCCCATCTG GTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCTCCCTCCT CGTCAGCTTCACCGTCTACATCATCCCCTCCCTCGCCTACATGGTCACCTTCCGCTCCCC GCAATCCCGCCAGAACGCGGTGGAGCGGCCGCCGAGGTTCGCCGGAGGATGGACGGGGGC GTACGTGATAAACTCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCTTCGGCGG GTGGGCGAGCATCACCAACTTCGTCCACCAGGTCGACACCTTCGGCCTCTTCGCCAAGTG CTACCAGTGCCCGCCTCACCCCGCCGCCGCCGCCCTCTCGCCGCCGGGTGCCATCGCTCC GGCGCCGGCCTCGATGCTGCCGCCGTTCAACTCCACCGCCGCCGGCATCTTTGCCGCTCC GGTGCCGTCTCCTGCTCCGGCTCCGGCACCGATGCATTTCGTCCTTGGTCACCACCACCA TCACCGGCACCACCGCCACGGCCTCTAGCTAATTAATCGAGATCAATCAAGATCATGATT ATCAGAGGTTGGGTTTGCATTATTGCACTAGTTTTTAGCGAGCTACTAGCTAGTTGATCA TCACTGCAAGATTGTTAATTAGCGCTAGTAATTAGTAAAAGTAAGCCTCTTTTCCTAATC CTATTGTATGCTTTGCTTCTTTCTTCTTCTTCTGGTTACTGAGAGAGAGTGAGAGTGAGA ATGTTTGGTGGTGGGGTATGCATGTCAGAGACACGTTTCAAGTCTCTCGTCTTGTAATGT GTCCTTTTTGTGTGGAGCTGCTTTTGAGAAAGAAAGAAGAGAGATCAAATTTAAAAAAAA AATGG
CDS |
1644 bp |
>Os10t0147400-01 AUX1/LAX family member, Auxin influx transporter, Regulation of primary root and root hair development, Phosphate starvation response ATGGCGTCCGGGAGCAGCGGCGGCGGCTACGCGGACGAGAAGGGGCCGGGGGCGGCGACG ATGCAGGCGCTGGGGCTGCAGCAGCAGCACGGCGGCGGCGGAGAGGTGGAAGAGGAGTCG TCGGAGATGGGGGAGAAGACGGCGGCGAGGACGCGGCTGTCGGGGCTGCTGTGGCACGGG GGGTCGGCGTACGACGCGTGGTTCAGCTGCGCGTCGAACCAGGTGGCGCAGGTGCTGCTG ACGCTGCCCTACTCGTTCGCGCAGCTGGGCATGGCCAGCGGCCTCCTCTTCCAGCTCTTC TACGGCCTCCTCGGCAGCTGGACCGCCTACCTCATCAGCATCCTCTACCTCGAGTACCGC ACCCGCAAGGAGCGCGACAAGGTCGACTTCCGCAACCACGTCATCCAGTGGTTTGAGGTG CTGGATGGGCTACTGGGGAGGCACTGGAGGAATGTGGGACTGGCCTTCAACTGCACGTTT TTGCTGTTCGGGTCGGTGATCCAACTGATCGGGTGTGCCAGCAACATCTACTACATCAAC GACCATCTGGACAAGCGGACATGGACGTACATCTTCGGCGCCTGCTGCGCCACCACCGTC TTCATCCCGTCATTCCACAACTACCGCATTTGGTCCTTCCTCGGCCTCCTCATGACCACC TACACCGCCTGGTACATCGCCGTCGCCTCCCTCATCCACGGACAGGTGGAGGGTGTGGCG CACTCTGGGCCCACAAGCATCGTGCTCTACTTCACGGGGGCCACCAACATCCTCTACACC TTCGGGGGCCACGCTGTCACCGTGGAGATAATGCACGCGATGTGGCGGCCGCAGAAGTTC AAGGCGATCTACCTGCTGGCGACGGTGTACGTGCTGACGCTGACGCTGCCGTCGGCGTCG GCGGCGTACTGGGCGTTCGGGGACGCGCTGCTGACGCACTCGAACGCGCTGGCGCTGCTG CCGCGGACGCCGTGGCGCGACGCCGCGGTGGTGCTCATGCTCATCCACCAGTTCATCACC TTCGGCTTCGCCTGCACCCCGCTCTACTTCGTCTGGGAGAAGCTCGTCGGCCTCCACGGC TGCCCCTCCCTCTGCAAGCGCGCCGCCGCCCGCCTCCCCGTCGTCCTCCCCATCTGGTTC CTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCTCCCTCCTCGTC AGCTTCACCGTCTACATCATCCCCTCCCTCGCCTACATGGTCACCTTCCGCTCCCCGCAA TCCCGCCAGAACGCGGTGGAGCGGCCGCCGAGGTTCGCCGGAGGATGGACGGGGGCGTAC GTGATAAACTCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCTTCGGCGGGTGG GCGAGCATCACCAACTTCGTCCACCAGGTCGACACCTTCGGCCTCTTCGCCAAGTGCTAC CAGTGCCCGCCTCACCCCGCCGCCGCCGCCCTCTCGCCGCCGGGTGCCATCGCTCCGGCG CCGGCCTCGATGCTGCCGCCGTTCAACTCCACCGCCGCCGGCATCTTTGCCGCTCCGGTG CCGTCTCCTGCTCCGGCTCCGGCACCGATGCATTTCGTCCTTGGTCACCACCACCATCAC CGGCACCACCGCCACGGCCTCTAG
Protein |
547 aa |
>Os10t0147400-01 AUX1/LAX family member, Auxin influx transporter, Regulation of primary root and root hair development, Phosphate starvation response MASGSSGGGYADEKGPGAATMQALGLQQQHGGGGEVEEESSEMGEKTAARTRLSGLLWHG GSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYGLLGSWTAYLISILYLEYR TRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIGCASNIYYIN DHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYIAVASLIHGQVEGVA HSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPSAS AAYWAFGDALLTHSNALALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKLVGLHG CPSLCKRAAARLPVVLPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPSLAYMVTFRSPQ SRQNAVERPPRFAGGWTGAYVINSFVVAWVLVVGFGFGGWASITNFVHQVDTFGLFAKCY QCPPHPAAAALSPPGAIAPAPASMLPPFNSTAAGIFAAPVPSPAPAPAPMHFVLGHHHHH RHHRHGL*
5'UTR
chr10:2855686..2855809 (- strand) : 124 bp
CDS
chr10:2855278..2855685 (- strand) : 408 bp
chr10:2854773..2855069 (- strand) : 297 bp
chr10:2854381..2854478 (- strand) : 98 bp
chr10:2852155..2852620 (- strand) : 466 bp
chr10:2849957..2850331 (- strand) : 375 bp
3'UTR
chr10:2849620..2849956 (- strand) : 337 bp
FASTA
>Os10t0147400-01 class=Sequence position=chr10:2849620..2855809 (- strand) AACACACCAC ACACACCCAC ACTGGCAGCA GCTCATACAC ATAGCTAGCT CAGCTGAGAC ACACACACAC ACAGTGAGTA GTTCAGCTCA AAGCTAGCAT CAGCAGCAGA GCTAATTAAC AAACATGGCG TCCGGGAGCA GCGGCGGCGG CTACGCGGAC GAGAAGGGGC CGGGGGCGGC GACGATGCAG GCGCTGGGGC TGCAGCAGCA GCACGGCGGC GGCGGAGAGG TGGAAGAGGA GTCGTCGGAG ATGGGGGAGA AGACGGCGGC GAGGACGCGG CTGTCGGGGC TGCTGTGGCA CGGGGGGTCG GCGTACGACG CGTGGTTCAG CTGCGCGTCG AACCAGGTGG CGCAGGTGCT GCTGACGCTG CCCTACTCGT TCGCGCAGCT GGGCATGGCC AGCGGCCTCC TCTTCCAGCT CTTCTACGGC CTCCTCGGCA GCTGGACCGC CTACCTCATC AGCATCCTCT ACCTCGAGTA CCGCACCCGC AAGGAGCGCG ACAAGGTCGA CTTCCGCAAC CACGTCATCC AGGTACCTAC TTACCTTCTC AAGGACTATA AAATCGATCT CTCACATATA TAAATCAATA TGTGATATGA TGATACATGt ctctcttttt ttttatcttc ttaaagtatg tttatggctg gctttatata gcctactatt atacctgctc taatATCGTT AACGATATAT AAATCAGTAC GTGATATGGT GATACATGTT TTTGTACCAG TGGTTTGAGG TGCTGGATGG GCTACTGGGG AGGCACTGGA GGAATGTGGG ACTGGCCTTC AACTGCACGT TTTTGCTGTT CGGGTCGGTG ATCCAACTGA TCGGGTGTGC CAGCAACATC TACTACATCA ACGACCATCT GGACAAGCGG ACATGGACGT ACATCTTCGG CGCCTGCTGC GCCACCACCG TCTTCATCCC GTCATTCCAC AACTACCGCA TTTGGTCCTT CCTCGGCCTC CTCATGACCA CCTACACCGC CTGGTACATC GCCGTCGCCT CCCTCATCCA CGGACAGGTA CATATATATC TTACATAATA TTCATagcag ttttatagtt cttgaggagg tatcatgatg taccaaaaat ttaatataaa atttggtacc tcatagtatt taggtaccaa aatgtatcaa atttataata taaaaaatag tacctcacga tacatcttca agaactgtaa aattactcat CTTTTTTTAA TATAAGATCA AAGTCCCAAA CGTCACTTAT TTATGATAAC AAAATGATAG TAATAGTGAT AGATAGTAAT TGTAATAGTG CATATATTGG GAATAATGCA GGTGGAGGGT GTGGCGCACT CTGGGCCCAC AAGCATCGTG CTCTACTTCA CGGGGGCCAC CAACATCCTC TACACCTTCG GGGGCCACGC TGTCACCGTG TAAGCCGACC ATCCTCTCTC TTGATTAGCT ATGGCTCGAT TAACCATTTG ATTGGTCATT AGTGCCTACT TAATTTTACT AAGTTTAGTT TAGTTTAATT ACTCTAAAGT ACGAACGATT AGTACTGTAT CCACTTATAG CTGGCTTGCT GCCTGCCTAT TGTTAGTTAG TTTACTTCTT TCCACTAATT AAGCTAGCTT AGCAGTAGTG TAACGGCTCA CTGCTAATGG AGCGTGAGTG CGCACCATGC GAGGCATAAT GGCATGCATG GTCACGTGCC ATGCACGCAT GGCTTGAAGT ACTTACTGAC ATGTGGTCCC ATTAAACTTA GGGACCACCA CTTGCACATA TAGGAACACA CGGGGTACCA CGTGATGAGA CGTGGATGTG GTTCCTCCTA ACATCCAAGT ACACGTGTCC CGTTCATCTG TCCATGGAGG AGAAAATTGT AATATTGGGA CTGTAAACAT GAGGGCTTCG CTGTTTTAAC ACTTCGAGTG GATGATAAAT GGGTCCATCT GTGTCTATAA AATATGGGTC CAGTGTCATT ATAACAAAAG TTAATGTTTG CAGTGTTATA ATTGCAAATC CCCTCTGTTG AGCCAGTGCT ACCGTCGAGT CTAAGCAACC GTCGAAAAAA CTCGTAATAT TAGCCATGGA ATGTATTTCT GTAGTTGTTT TACGAAATAT AGCTCATATC AATTTGGCAG TTGGCTATAA TATGCTGTTG GTTTCGTCTA AGTTGATTAA GAGGGTGATA TATATGCTAG CAAATGAAGA ATGAACATCG ATCACATCTC GTTGGTGACT CATGTATTTG TGGTCTAACC AGTCATTTTT GCCATGTTTA ATGGATCAAG CTAGTCTTAT AGCAATGTAA TGCCAAATGC CAACACAAGC TAACTGGGCC CTTTGGTGTA AGCTCAGTCT ATAGCAGCTA GCATGCATcc atcatctcta gctactttgt actccctccg tcccacaata taagagattt taagtttttg cttttaacgt ttgaccactc gtcttattta aatttttttt gcaaatataa aaaacgaaaa gttatgctta aagtattgta gataataaag aaagtcaaaa ataaaataat taataatttt aaaaaaattt aaataagacg agtggtcaaa cgttacaaac aaaaactcaa aattccttaa tattatggga cggagggagt aTAGTTTGTG TCTTTATGTA CCAAACCAAG ACAAGACAAG ACCACACTGT ATACATGCTA CTACAGGAAA ATCACTTTGG TACAGGTTAG AAAACCAATA TTTAACTTCG ATCGGTCACC TATAACTAAA AAAGATGTTA TGAACCTAGA ACAAACACCT ATAAACTCTT ATAGGTGCCA TATTTTAAAC CGTCCGGTCA CACGTGGCAT GACATGCGCA ATGCCCACCA ACATCTGGGC CCTGCATCGT CGTTTCTCTT GCACGAATCT GAAAGCACAC ACATGtactc cctccgtttt agattataag ttattttgat tttggtcgaa atcaaactgc tttaagtttg actaaatttg taagaaaaaa ataatatttt taaccaaaat aaacatttaa ttatagattt gattgaactg atttggtgtt gtaaatatta ctacatttat atctataaaa cttgggagta gattgatttt aaccaaagtc aaaataactt atagtaGTAG TAATTAAGAA AGTAATTAAG GGATGAAATG CAAATGCAGG GAGATAATGC ACGCGATGTG GCGGCCGCAG AAGTTCAAGG CGATCTACCT GCTGGCGACG GTGTACGTGC TGACGCTGAC GCTGCCGTCG GCGTCGGCGG CGTACTGGGC GTTCGGGGAC GCGCTGCTGA CGCACTCGAA CGCGCTGGCG CTGCTGCCGC GGACGCCGTG GCGCGACGCC GCGGTGGTGC TCATGCTCAT CCACCAGTTC ATCACCTTCG GCTTCGCCTG CACCCCGCTC TACTTCGTCT GGGAGAAGCT CGTCGGCCTC CACGGCTGCC CCTCCCTCTG CAAGCGCGCC GCCGCCCGCC TCCCCGTCGT CCTCCCCATC TGGTTCCTCG CCATCATCTT CCCCTTCTTC GGCCCCATCA ACTCCGCCGT CGGCTCCCTC CTCGTCAGCT TCACCGTCTA CATCATCCCC TCCCTCGCCT ACATGGTCAC CTTCCGCTCC CCGCAATCCC GCCAGGTACC TTCTTACTTT TCTTCTTACT CCATCCGTTT CAGGTTATAA GACGTTTTAA Ctttgttcaa acttaaattg ttttaagttt gactaagttt gtagaaaaaa gtagtaatat ttttaacctc aagacaaatt tattatgaaa atatattcaa ttattgattt gatgaaacta tatttagtat tataaatatt actatatttg tctataaacg tagtcaaatt tgaaacagtt tgactttgaG CAAAACCAAA ACATTTTATA ACCTAACACG GAAGGAGTAC TAATTTTCTT TATCTTTCTA ATTCTCATCA TCAAAATGCA TTTTACATAT ATACATGCTT GAATTTATTT GTCTTTGAGT GCCTACATTG GGGGTCCATT GCAACCATAT TTGCTGAGGC TTTAGGTAGA GATGATATAG TTTCAGTGCT GTTCCTATGT ATACATAGTT GCCAAATGCT AGCTATCTAG ATACAGAAGC AAATGTTTGG TGATTGATGG AACAGCTGGT TGTTGCAATG CAGCCTAGAC AGCATGAGCC CACCATGCTT CCCCATCACA CCTTGCTTGC TTCTTCTAGT GCTTACTGAT AATTAGAACA GATCAATTAA TTAATTAATT GTTTGTCTTA ATTAATCAAA GCTAGCGCTA GCCATTAACA AGACTAGCTA GTTGGCGTCT ATTTGATTGA TCTGCTGCTG GGACGTGGCA AATTCCAATG AACTCAACGT AACACTGGTA ATTAAACACT ATTATTATTG TTTCTGCTGC TGCTGAGTGT TGCAAGTGTG TCATTCTCGG TGAAGAAGAG ACTGAATGCA AGACAAATCT GAGCAGCGAC AGCATGCAAT TCCTTTGAGC TGAGCTAGAA ACCAGAGCAA GTGGCGATAT GATATGATAT GATAAAAGAA AAGCTATATG TACCATAAAG CTACTGAAAG TGGTGTAGAG ATTAATCAGG ACGCTTGCTG CTGCTGCTGT GCTGCATGCT TGCCTGCTGC AATGTTTTTG TACCATCTGC TGTCCGGGAG CCATTGGCAC CGAGCAGACA GACTGCATTG CAATATTGCA TTGTATTTGC ATTAGAGAGA GAGCTAGGTC GACACCCATG ATACCATGTC TAGAAAGCAA CAAAAATAAA GCTTTCAGCA ACAGCATCAT CACAGTATAC TAGTAGCAGT AGAATACCAT CATTCACCTA ATGACCTACT TGTGACATCA TCCCAATGCA AGCTTAACTT ATCTTTGCAT AATCTTTAAT TTCTTCCTGA TCTGCATCCA TATACTGTTC TGTTTGATTC TGAAACAGTA CATACAATAC ATACAGTTGC ATGTTCTGTT TCGTATAATT CGGTAACAGT AGTATAATAA CTCAAACATA TATAATTAAG TAAAGGTGCA ATATTATTAG ACTTTTGCAT AATCTTTTCT TTCTGATCCC TGCATTCATA TATACTGCTC TCTGTTGGAT TCTTGAACAG TAATCTAACT GAAAATTATA Attagagcaa gtttaatagt atagctaact gctgactcta aattatctat agttaactta atagccaatt aatagccaat tcatacaata gttacctata aacatatact acataatcaa tatttggtcc cacctgtcat acacatatgc attttacagt ctgtgctgta gctggcttac aaatctgtaa cccgctactc ttacctctac tcttttatct tcttgaaata tgcttatagc tgacttatag tcagctattg tacctgctAT CACGAGATGA TAGTAATTAA TAACTGATTG GATTGGATTG GATTGCAGAA CGCGGTGGAG CGGCCGCCGA GGTTCGCCGG AGGATGGACG GGGGCGTACG TGATAAACTC GTTCGTGGTG GCGTGGGTGC TGGTGGTCGG CTTCGGCTTC GGCGGGTGGG CGAGCATCAC CAACTTCGTC CACCAGGTCG ACACCTTCGG CCTCTTCGCC AAGTGCTACC AGTGCCCGCC TCACCCCGCC GCCGCCGCCC TCTCGCCGCC GGGTGCCATC GCTCCGGCGC CGGCCTCGAT GCTGCCGCCG TTCAACTCCA CCGCCGCCGG CATCTTTGCC GCTCCGGTGC CGTCTCCTGC TCCGGCTCCG GCACCGATGC ATTTCGTCCT TGGTCACCAC CACCATCACC GGCACCACCG CCACGGCCTC TAGCTAATTA ATCGAGATCA ATCAAGATCA TGATTATCAG AGGTTGGGTT TGCATTATTG CACTAGTTTT TAGCGAGCTA CTAGCTAGTT GATCATCACT GCAAGATTGT TAATTAGCGC TAGTAATTAG TAAAAGTAAG CCTCTTTTCC TAATCCTATT GTATGCTTTG CTTCTTTCTT CTTCTTCTGG TTACTGAGAG AGAGTGAGAG TGAGAATGTT TGGTGGTGGG GTATGCATGT CAGAGACACG TTTCAAGTCT CTCGTCTTGT AATGTGTCCT TTTTGTGTGG AGCTGCTTTT GAGAAAGAAA GAAGAGAGAT CAAATTTAAA AAAAAAATGG
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