Os10t0463400-01

Locus

Os10g0463400

Description

B-type response regulator, Floral inducer to promote short-day (SD) flowering pathway

RAP-DB Gene Symbol Synonym(s)

EF1, Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22

RAP-DB Gene Name Synonym(s)

EARLINESS 1, Earliness1, Earliness 1, Earliness-1, EARLY HEADING DATE 1, Early heading date1

CGSNL Gene Symbol

EF1

CGSNL Gene Name

EARLINESS 1

Oryzabase Gene Symbol Synonym(s)

Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22

Oryzabase Gene Name Synonym(s)

Earliness1, Earliness 1, Earliness-1, EARLY HEADING DATE 1, Early heading date1

Transcript Evidence

AB092506 (Genbank)

Protein Evidence

Q7Y0W5 (UniProt)

Literature

PMID: 15078816

PMID: 16919402

PMID: 17293362

PMID: 20543848

Note

Manual Curation

May 31, 2010

Gene Ontology (GO)

Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160)

Biological Process: regulation of transcription, DNA-dependent (GO:0006355)

Molecular Function: two-component response regulator activity (GO:0000156)

Molecular Function: DNA binding (GO:0003677)

Molecular Function: protein binding (GO:0005515)

Functional domain (InterPro)

Signal transduction response regulator, receiver domain (IPR001789)

Myb-like DNA-binding domain, SHAQKYF class (IPR006447)

Homeodomain-like (IPR009057)

CheY-like superfamily (IPR011006)

Homeodomain-related (IPR012287)

Myb, DNA-binding (IPR014778)

Response regulator, plant B-type (IPR017053)

Transcription regulator HTH, Myb-type, DNA-binding (IPR017930)

Expression Databases

TENOR (Os10t0463400-01)

Others

Oryzabase (883)

Transcript

1026 bp

>Os10t0463400-01 B-type response regulator, Floral inducer to promote short-day (SD) flowering pathway
ATGGATCACCGAGAGCTGTGGCCTTATGGACTAAGAGTTCTGGTCATCGATGACGACTGT
TCATACTTGTCAGTCATGGAAGATTTACTTCTGAAGTGCAGCTACAAGGTTACAACGTAT
AAGAACGTCAGAGAAGCTGTGCCTTTCATATTGGACAATCCACAAATAGTTGACCTAGTA
ATCAGTGATGCGTTCTTTCCTACCGAAGATGGTTTGCTCATTCTGCAAGAAGTAACCTCC
AAGTTTGGCATACCTACAGTGATTATGGCTTCAAGTGGAGACACAAATACAGTGATGAAA
TATGTTGCAAATGGCGCTTTTGATTTCCTGCTAAAACCTGTGAGGATCGAAGAGCTGAGC
AACATTTGGCAGCACATATTCCGAAAGCAAATGCAAGATCACAAGAACAATAACATGGTT
GGAAATCTCGAAAAACCCGGTCATCCTCCATCAATATTAGCCATGGCTCGTGCTACTCCG
GCTACCACGAGATCAACGGCCACCGAAGCTTCGCTAGCGCCTCTAGAAAATGAGGTGAGA
GATGACATGGTCAACTACAATGGCGAGATCACGGACATACGAGACCTCGGAAAGTCCAGG
CTGACCTGGACCACGCAGTTGCACCGTCAGTTCATTGCAGCAGTGAACCACCTCGGAGAA
GACAAGGCAGTTCCAAAGAAGATACTAGGGATAATGAAGGTCAAACATTTGACAAGAGAG
CAAGTTGCCAGTCATCTGCAGAAATACAGGATGCAACTGAAGAAATCGATTCCAACAACA
AGCAAACACGGAGCGACTTTGTCATCCACCGCTCTCGACAAAACACAAGACCACCCTTCA
AGATCGCAGTATTTCAATCAAGACGGATGCAAGGAAATCATGGACTACTCTTTACCGAGA
GATGACCTCTCAAGTGGCTCAGAGTGCATGCTTGAAGAACTGAACGATTACTCATCCGAA
GGTTTCCAAGATTTCCGATGGGATTCAGACAAACAGGAATATGGACCATGTTTTTGGAAT
TTCTAG

CDS

1026 bp

>Os10t0463400-01 B-type response regulator, Floral inducer to promote short-day (SD) flowering pathway
ATGGATCACCGAGAGCTGTGGCCTTATGGACTAAGAGTTCTGGTCATCGATGACGACTGT
TCATACTTGTCAGTCATGGAAGATTTACTTCTGAAGTGCAGCTACAAGGTTACAACGTAT
AAGAACGTCAGAGAAGCTGTGCCTTTCATATTGGACAATCCACAAATAGTTGACCTAGTA
ATCAGTGATGCGTTCTTTCCTACCGAAGATGGTTTGCTCATTCTGCAAGAAGTAACCTCC
AAGTTTGGCATACCTACAGTGATTATGGCTTCAAGTGGAGACACAAATACAGTGATGAAA
TATGTTGCAAATGGCGCTTTTGATTTCCTGCTAAAACCTGTGAGGATCGAAGAGCTGAGC
AACATTTGGCAGCACATATTCCGAAAGCAAATGCAAGATCACAAGAACAATAACATGGTT
GGAAATCTCGAAAAACCCGGTCATCCTCCATCAATATTAGCCATGGCTCGTGCTACTCCG
GCTACCACGAGATCAACGGCCACCGAAGCTTCGCTAGCGCCTCTAGAAAATGAGGTGAGA
GATGACATGGTCAACTACAATGGCGAGATCACGGACATACGAGACCTCGGAAAGTCCAGG
CTGACCTGGACCACGCAGTTGCACCGTCAGTTCATTGCAGCAGTGAACCACCTCGGAGAA
GACAAGGCAGTTCCAAAGAAGATACTAGGGATAATGAAGGTCAAACATTTGACAAGAGAG
CAAGTTGCCAGTCATCTGCAGAAATACAGGATGCAACTGAAGAAATCGATTCCAACAACA
AGCAAACACGGAGCGACTTTGTCATCCACCGCTCTCGACAAAACACAAGACCACCCTTCA
AGATCGCAGTATTTCAATCAAGACGGATGCAAGGAAATCATGGACTACTCTTTACCGAGA
GATGACCTCTCAAGTGGCTCAGAGTGCATGCTTGAAGAACTGAACGATTACTCATCCGAA
GGTTTCCAAGATTTCCGATGGGATTCAGACAAACAGGAATATGGACCATGTTTTTGGAAT
TTCTAG

Protein

342 aa

>Os10t0463400-01 B-type response regulator, Floral inducer to promote short-day (SD) flowering pathway
MDHRELWPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLV
ISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELS
NIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVR
DDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTRE
QVASHLQKYRMQLKKSIPTTSKHGATLSSTALDKTQDHPSRSQYFNQDGCKEIMDYSLPR
DDLSSGSECMLEELNDYSSEGFQDFRWDSDKQEYGPCFWNF*

CDS

chr10:17081236..17081344 (- strand) : 109 bp

chr10:17079823..17079975 (- strand) : 153 bp

chr10:17077580..17077981 (- strand) : 402 bp

chr10:17077354..17077430 (- strand) : 77 bp

chr10:17076098..17076382 (- strand) : 285 bp

FASTA

>Os10t0463400-01 class=Sequence position=chr10:17076098..17081344 (- strand)
ATGGATCACC GAGAGCTGTG GCCTTATGGA CTAAGAGTTC TGGTCATCGA TGACGACTGT TCATACTTGT CAGTCATGGA
AGATTTACTT CTGAAGTGCA GCTACAAGGG TAAAATACCA TCTATACAAG ACACATAATT AATTAACAAA ATCTAACTAT
CTAGCTTGGC ATATATAGTG ATCGAATATA TTGATGCGAA TTAAGATTAT ATAAGATTAT ACATATAAAA TATTGAGTTT
TTCTGGATTA AATAGAAGAT GCATACAGAA GTTACAAACA CGCACCACTA CACACGTGTC CATGCACACT AATGTGTCTC
CTAATATATA CATGCTCAGA TACGCTCAGA TAGACAGATC AGATCAATGG CAAATCTTTG ACCTCACTAA AATCCTATTG
GAAGTATGTG CATAAAATTT GTAAATAAAA TTTGTATAAG ATCATTAATT TTTCTACTAT TTAAGTTCAG TCAGTTTCAC
ATGCATAATA CATGATAATC CTATATTATG TATATATATC ATTCCATGCT TACTTTAACC AAATTTTCCC TCTACCTTGG
TGTAGCCAAT GCATCATATA GTTATAATAT GTTATGAATA CATAAATATA TAGCAGAATT TATGTTCATT GTCACATAAA
ATGTGTTTGC ATGATTCTTA TTATTAAAAT AAATATTTGG TAATGTGTTT CAGCTAACAG GCACATGGAA TATAGTCAAA
GATGATCAGC TCTGTGGTTG GACTGCCATT TGCTTTGAAG AAGCTACAAA AATTTAATTA ATTTTGAAAA TGAAATAAAA
CATGCGGGAG TTCTATATAG TGTATATACC TTAAAATAAT TCTTTTCTTT CTTCCCATTT AGTTTGTCAA ATTAGACTGC
AAGTAGTAAT TAAATCGAAG TCTTGGAGGG TAGTGCAGAA CATATATTAA GAACAAAGGT ATACTTTAAT TATATATCCT
CACCTTGCAG TTGCGGTTTC TAGGGTTAGC ATATATTTTG TGAGGTGTCA ACTCAGATAT TGTGATGACA AATTAACCTA
TAAATTTTCT CCATATGTTT TTATTCAATG GGCGATCCAT ACTCCATAAA ATGCATATTA ATTAATTTGT AATGAAAACC
GGGAAAAGTT GTGTTCGTAT ATATACCAAG AATCTTGCAA GAAAGTGATT GTATGTAGTA ACATTTCCAT ACACACATGA
AGTTACACAC ACACACACAC ACATATTATA TATATATATA TATATATATA TATATATATA TATAGTCTAA CGTCAAAAAT
GAAATTCTTC TAGATATATC TTACAAATAT TCGATATTGG CCTCATTTTC TTTGTGATGT ATGTACCTTA TATTAGTATT
CTCTTGTAGT TACAACGTAT AAGAACGTCA GAGAAGCTGT GCCTTTCATA TTGGACAATC CACAAATAGT TGACCTAGTA
ATCAGTGATG CGTTCTTTCC TACCGAAGAT GGTTTGCTCA TTCTGCAAGA AGTAACCTCC AAGTTTGGCA TACCTACAGT
GAGTAAGTAA TTTATTTATT ATCTCCTTAC ACATTCTTAC TAGTTTATAT GGATTACACG CCTTAACTTA TGCGTGCGTG
TGTGCTTGAG GAACTAGGTC AAATATGCAC TAATATATAA TAAGCTACTC ACTCCGTCTC AAAATATAAC TACTttcgct
acgcgcgggt caggtcatct gtgatgggcc caaaccgtac ctctgacagg ttcggccctc atcagagatt agtggtcagc
ctactcacct ctgacgggcc gttagaaatg ggtcgtcaca ggtgactcac ttgtgatgtg tggctctttc caacatgtca
gaggtgACTG TCACCTTTGA CGGGTTGTAT TTTATCACTT ATCACAGGTG TGAAAAAACA ACCCAAAAGA AAAAGCAAAA
GCCCTCAGCC CCAAGCTCAC GCCAAGAGCA TAACACAACA TCTTTGCATT TTATTGGCAG ATCTGATAAC ATCCAAGAAA
AAACTACAGA TGAAACAAAA GATGTATGAT ACATATCAAA CTTGAGTAAC AATATACATC ACACAAGTAA TGATCTCCAT
CCTAACAAAC TACACATCCA CACAAGTAAC AAAGAATATG GCCCAATCTG AAATTTGGCA GTGAACATTT GCAAGATATG
AAATCAAGAA CAACCTACAG GAGTGTCAAG GTCAGGGAGG CCGCCGTGCT CCCCCTCCAC CCCTGTCAGA TCTACCCACC
AACTCCACCA CCAGATCTGC CAATCCTCCA GGGTCAGAGA GGCTAGATCC ACGCTCGAGG AGAGCCTAGA TCCGCACTTG
TGATAGGGAC GGCTACCATT GCTTTGGACT GGAGAAGACG AGGAAATGGC ATCAATGATC GGGGAGGCTA GATCTGCACC
CGAGGAGGCA GCTGGTGCTT GAGGGTAGAG GAGACAGCGG CCAACAGTCG GATCGATCCA TGTCCCCCGA CCTTGTGGAG
GCTAGATCCC ACGGTCGCCG GATGCTGGCG GAGATGGGGG AGCCCGGGCT CGGGGGAGAG GCCGGCTCCG GTGGCCGGCG
GTTGGGTGAT AAAGGAGGAG GCGGCCAACA GTCAAGGGAG AGGCCGCGGC GGCCGGTGAT TGGGGGAAGG AGGACGCAAC
GGCTGGAGAT CGGGGAAAGG AGGAGGCGGT AGCCGAATCC ACATCCTGGA GGCAAGATCC GGCGACCGGT GATCAGGAGG
CGGTTAGGGG AAGAGAGTTT GAGATATGGG GATAAGGATG AGAGGGAGAA AGTGAGCAGA TGTGAGGAGA AGAAAGAAGA
GAGACCGGAG GATGGGAGGA GATGGGAAGG GAGTTGGGCC GTACACATGG GGATTGGGGG ATTTTCCTTT ATTTTAAATT
ATCATTGACG AGCATAAGAA TTTAACACGT TAGATATGAG GTATCACATC CTGTGATGAG GTGCAAACTC AACACCCGTC
ACAGATAGAA GGTCATATAT GACGGGCCTA TATGTGGGCC CGTCAAAGAT GTTATGTGTC GAGTCCTCAT AAATGTCCGT
AAGATGAGTT TTTACTTGTG ACGAGCCATC CCTTTGAACC CCATCTACAA CTGGCTATAG TTCAACCCTA TCAGAAATAA
TATCTTTCGT GACGAGACAT TGGCCTGTCA CAGATATGCC GTCACAATGG GCTGCTCTAG TGAAGTGTTC GAGAATTCAA
ATtcgtctca accaatcaca atcatttaat ttattcacct atttttttat ctcaaccaat cgcaatcatt tttttaTAAA
TAGTAATATT TTGAGACAAA AGGATCGGAG TACACCCTAA TAAGTTTACT CACAAGGAAA CTTTATATAT GTTTTTTAAC
TAGTTATGGC TTCAAGTGGA GACACAAATA CAGTGATGAA ATATGTTGCA AATGGCGCTT TTGATTTCCT GCTAAAACCT
GTGAGGATCG AAGAGCTGAG CAACATTTGG CAGCACATAT TCCGAAAGCA AATGCAAGAT CACAAGAACA ATAACATGGT
TGGAAATCTC GAAAAACCCG GTCATCCTCC ATCAATATTA GCCATGGCTC GTGCTACTCC GGCTACCACG AGATCAACGG
CCACCGAAGC TTCGCTAGCG CCTCTAGAAA ATGAGGTGAG AGATGACATG GTCAACTACA ATGGCGAGAT CACGGACATA
CGAGACCTCG GAAAGTCCAG GCTGACCTGG ACCACGCAGT TGCACCGTCA GTTCATTGCA GCAGTGAACC ACCTCGGAGA
AGACAGTGAG TGATCAAATT AAACTTCTTT GCAGTACCAT TTCAATCACT TTTCATATGT ATACATGCGT GTATACATTA
ATTTTAATTT ACTAGTATAT ATGTATTTCC TAGCTTGTTT TAAGATGTGG TAATTATGTG TAATTTATTT GCAGAGGCAG
TTCCAAAGAA GATACTAGGG ATAATGAAGG TCAAACATTT GACAAGAGAG CAAGTTGCCA GTCATCTGCA GGTAATATTT
CAGTGGCTCA TTGCAAGATG AAAGCAAAAC CTATCATGTT TTTCCTTTCA AGATTTCTTT ACGATAAATT AGACCATATG
CAAGATATAT ACAAGGGCAA ATTCCCTCCA GAGTTTTTAG AAAACACTTT CCAATGTATA ATATGTAAAA ATGTGTTGTC
CATGTTACAA TGATTCTTAA TTATACTACT TTCACAATTG TACATATAAA TTAGCCTAAT ACTACTCATA CATATGTATC
AGGTACACAT TGTAAGTTTA TATATTTGCA TCACTCTAAT GTACTCCCTA GCTCTGTCCA TGAATACAAG GGATTATACC
CAATTAAGAA GAAACTAAGA AAGTGGGTAA AGTACGCACT GCTGCTCATG ATGGAGTATT ACTAGTAGTA CATTCTCTCT
ATTTTTTTGG GTAGGGATGA TGGGGAGTAG TGCTAGTAGA TTTTTTTTCT CTTTTTTTTA TAGAACCGAT GGGGTAAATA
AATGGAAGCT GCTGATATAT GAATTACTGA CTATTGTTCT CTTTGCTTTC CCAATACTTA TATTCTTGAT AAACTAGAGG
cagggtttga aatttcgaaa ttggatttta tgtcgggggt gaacgaaatt accgaaaatt tctggccgga attatttgaa
aatttgacta aattcacaaa aaaattgcaa aaaaactgaa aattttaggc gagatttgag catgccggtg gagggcaaaa
ttaccaaaat ttcggaaaat tcgaaccgaa atttcaaacc cTAACTAGAG GATCATAATC ATATTTATGG ACAGAGGGAG
CATGAATGAA TATGACCGAT GCTTCTAGGG TTTCCTTCTA CAAGCATCCT AATTAGCTTA TTCAAGTTAG AGTGCATCCA
CTGCATAACT TCTTTCGCTG CTTCTTCAGC TAATTCAGTT GAACATATAT AACCATAAAA CCTAACATTT GAACTGATGC
AGAAATACAG GATGCAACTG AAGAAATCGA TTCCAACAAC AAGCAAACAC GGAGCGACTT TGTCATCCAC CGCTCTCGAC
AAAACACAAG ACCACCCTTC AAGATCGCAG TATTTCAATC AAGACGGATG CAAGGAAATC ATGGACTACT CTTTACCGAG
AGATGACCTC TCAAGTGGCT CAGAGTGCAT GCTTGAAGAA CTGAACGATT ACTCATCCGA AGGTTTCCAA GATTTCCGAT
GGGATTCAGA CAAACAGGAA TATGGACCAT GTTTTTGGAA TTTCTAG