Locus
Os10g0572300
Description
Similar to Protein lap4.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
CGSNL Gene Name
Oryzabase Gene Symbol Synonym(s)
OsIRL5
Oryzabase Gene Name Synonym(s)
intracellular Ras-group-related LRR protein 5
Transcript Evidence
AK065479 (DDBJ, Best hit)
Protein Evidence
B6SVK6 (UniProt)
Literature
Note
- CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
Gene Ontology (GO)
Molecular Function: protein binding (GO:0005515)
Functional domain (InterPro)
Leucine-rich repeat (IPR001611)
Leucine-rich repeat, typical subtype (IPR003591)
Full-length cDNA
J013025D12 (Online Clone Ordering)
Expression Databases
TENOR (Os10t0572300-02)
Others
Oryzabase (14435)
Transcript |
1470 bp |
>Os10t0572300-02 Similar to Protein lap4. TGGATACGTTGGTGTTGGTGCGGACAGCGTGGACCTGGAGATGGAGCTGAGGAAGAAGGA GGCGGCGGTTGCGGCCGCGGCCGCCGTCGCGGAGATGGAGCGCGGAAGCAAGGGTCTCGC TGCCCTGGGCTTGGAGTCCAAGCCCATCTCCTCGCTACGCCGTGATGTCTCTGCAGGTAC TGACATGGAAAAATTGAGCCTTATCCAAGTGGCAAGCCTGATAGAGTCATCAGCAAAGAA AGGGATCACAGAACTCAGCCTCCGGGGGAAACTGGTCGACCAGATCGAGTGGCTCCCTGT TTCACTCGGCAAATTGCAAGATGTTACCGAGCTTGATCTTTCCGAGAATAGGATCATGGC ACTCCCATCAACAATTGGCAGCCTTAGATATTTGACAAAGCTTGACCTACACTCAAATCA GCTGATCAATCTGCCCGACGCGTTTGGGGAACTCTCCAACCTAATTGATCTTGACCTGCA TGCCAACCAGCTTAAGTCTCTTCCTTCATCATTTGGAAATCTCACGAGCCTAGCAAACCT TGACCTGAGCTCAAATATGTTGAAGGCTCTTCCAGATTGTTTAGGAAAATTGGCAAACTT GAGAAGATTAATTGTTGAGACAAATGAGCTTGAGGAGCTACCCTATACTATTGGATCTTG CACATCTCTTGTGGAGCTTAGGTTGGATTTCAATCAGTTAAAAGCCCTTCCAGAGGCCAT TGGGAAGTTGGAGAAGCTGGAAATACTGACATTGCACTATAACAGAATCAAAGGATTGCC TACAACAGTGGGTTCACTTTCCAGATTGAGAGAGCTGGATGTCAGTTTTAATGAGGTTGA AGTAATCCCTGAGAACATTTGCTTTGCGACAAGTCTTGTGAAGTTGAATCTCAGCAGGAA TTTTGCAGACTTAAGAGCACTGCCGAAATCAATAGGAAATCTTGAGATGCTAGAGGAGCT GGACATAAGCAGTAACCAGATACGGGTACTGCCAGATTCGTTCAGGTGTCTTTCGAGGCT ACGTGTATTTCATGCTGATGAGACTCCACTTGAATTTCCACCAAGAGAAGTTGTAAAGTT AGGGGCTCAGGCTGTGGTCAAGTATATGAATGATTTGAATGCTGCAAGAGGAACAAACCA GAAGAAAACAGATCGGGGAAGCTTCTGGACCTGGCTCTTCTCGCTGTTTGGTTGTTGCAA AAAGAACCAAGAAGTGGGATTGCCAGTATAACTGAAGCATTTCATCATCTGTATGTATGT TGTGAATTACTCAGGTCTGCAAAGAAAGGAAACGTGGATAATTTGGTTCCTCTTGTTTTT TTTGTCCCTTTTTTTTGGTGTGTATATATGTAATTTTGTCATGTAAGGTCCATTTCTAGT TATGCAAGACCTATTAAGATTCATTTCTGTGTGTAACTTCATTTGTATGATAGCATGTTA CTGCTTCCATATTAAAAACTGTCTTACAGC
CDS |
1230 bp |
>Os10t0572300-02 Similar to Protein lap4. GGATACGTTGGTGTTGGTGCGGACAGCGTGGACCTGGAGATGGAGCTGAGGAAGAAGGAG GCGGCGGTTGCGGCCGCGGCCGCCGTCGCGGAGATGGAGCGCGGAAGCAAGGGTCTCGCT GCCCTGGGCTTGGAGTCCAAGCCCATCTCCTCGCTACGCCGTGATGTCTCTGCAGGTACT GACATGGAAAAATTGAGCCTTATCCAAGTGGCAAGCCTGATAGAGTCATCAGCAAAGAAA GGGATCACAGAACTCAGCCTCCGGGGGAAACTGGTCGACCAGATCGAGTGGCTCCCTGTT TCACTCGGCAAATTGCAAGATGTTACCGAGCTTGATCTTTCCGAGAATAGGATCATGGCA CTCCCATCAACAATTGGCAGCCTTAGATATTTGACAAAGCTTGACCTACACTCAAATCAG CTGATCAATCTGCCCGACGCGTTTGGGGAACTCTCCAACCTAATTGATCTTGACCTGCAT GCCAACCAGCTTAAGTCTCTTCCTTCATCATTTGGAAATCTCACGAGCCTAGCAAACCTT GACCTGAGCTCAAATATGTTGAAGGCTCTTCCAGATTGTTTAGGAAAATTGGCAAACTTG AGAAGATTAATTGTTGAGACAAATGAGCTTGAGGAGCTACCCTATACTATTGGATCTTGC ACATCTCTTGTGGAGCTTAGGTTGGATTTCAATCAGTTAAAAGCCCTTCCAGAGGCCATT GGGAAGTTGGAGAAGCTGGAAATACTGACATTGCACTATAACAGAATCAAAGGATTGCCT ACAACAGTGGGTTCACTTTCCAGATTGAGAGAGCTGGATGTCAGTTTTAATGAGGTTGAA GTAATCCCTGAGAACATTTGCTTTGCGACAAGTCTTGTGAAGTTGAATCTCAGCAGGAAT TTTGCAGACTTAAGAGCACTGCCGAAATCAATAGGAAATCTTGAGATGCTAGAGGAGCTG GACATAAGCAGTAACCAGATACGGGTACTGCCAGATTCGTTCAGGTGTCTTTCGAGGCTA CGTGTATTTCATGCTGATGAGACTCCACTTGAATTTCCACCAAGAGAAGTTGTAAAGTTA GGGGCTCAGGCTGTGGTCAAGTATATGAATGATTTGAATGCTGCAAGAGGAACAAACCAG AAGAAAACAGATCGGGGAAGCTTCTGGACCTGGCTCTTCTCGCTGTTTGGTTGTTGCAAA AAGAACCAAGAAGTGGGATTGCCAGTATAA
Protein |
409 aa |
>Os10t0572300-02 Similar to Protein lap4. GYVGVGADSVDLEMELRKKEAAVAAAAAVAEMERGSKGLAALGLESKPISSLRRDVSAGT DMEKLSLIQVASLIESSAKKGITELSLRGKLVDQIEWLPVSLGKLQDVTELDLSENRIMA LPSTIGSLRYLTKLDLHSNQLINLPDAFGELSNLIDLDLHANQLKSLPSSFGNLTSLANL DLSSNMLKALPDCLGKLANLRRLIVETNELEELPYTIGSCTSLVELRLDFNQLKALPEAI GKLEKLEILTLHYNRIKGLPTTVGSLSRLRELDVSFNEVEVIPENICFATSLVKLNLSRN FADLRALPKSIGNLEMLEELDISSNQIRVLPDSFRCLSRLRVFHADETPLEFPPREVVKL GAQAVVKYMNDLNAARGTNQKKTDRGSFWTWLFSLFGCCKKNQEVGLPV*
5'UTR
chr10:22691246..22691246 (+ strand) : 1 bp
CDS
chr10:22691247..22691421 (+ strand) : 175 bp
chr10:22692403..22693316 (+ strand) : 914 bp
chr10:22693405..22693545 (+ strand) : 141 bp
3'UTR
chr10:22693546..22693784 (+ strand) : 239 bp
FASTA
>Os10t0572300-02 class=Sequence position=chr10:22691246..22693784 (+ strand) TGGATACGTT GGTGTTGGTG CGGACAGCGT GGACCTGGAG ATGGAGCTGA GGAAGAAGGA GGCGGCGGTT GCGGCCGCGG CCGCCGTCGC GGAGATGGAG CGCGGAAGCA AGGGTCTCGC TGCCCTGGGC TTGGAGTCCA AGCCCATCTC CTCGCTACGC CGTGATGTCT CTGCAGGTAA TTTGCTTTCA AGTACAGTAT TATTTTGTCG GAATCACGAA ATCCTAAAAA TCTTTGTACT ACTATATATC CATGTGTGAT GGTTTCGATG CTGCCGTGTT CTATGGACCC GACATAATTT TGCAGTATCT GTTTTTTTTT CCGGTTAAAT TTCACTACCT TGCACGAATT GGATGCTCAT GTCATGCATA TGGGCGTAAT ATTTCCATTA CGATGTGGTT GCTACCTTTT ATATAGAAAG AATCACTAGA AATAATTGTC AACTGACGTA ATGGCGTACT GATTTGTTAG TGTTGCTTTG ATTTTCTTCA ACTAGTTGCC ATTTAATTGC ACACTGTTTA TAAATTGCCT ATTCTTGTTT CACTAGTACT ATAATTGGAA ACATAGAGGA GCGGTCTCGT AGTTTGTGAT GATTCTGTAT TTCTGCTTGT TGGTTTAGCA AATTACACGA TTGATGTCTA CAAGGTACCA GTGTACCGCA ACTGATTTTT CACCTTTCGC TATGAGTTAG CGTTTGATGT GAACAACCAC CTCTGCAGCC AATTGTCACA TCACATCCAT TTCTTCAAAG GAATTTCGTG CTATTTTGTG ATTTCTTTTT TCTTGACATA ATGCATTAGT CGTTTGTTGG TCCCAGCTTT AATTTTTAAT TTTCTTGCGG TAGTTGGAGG ACCATTCCCT TGTTGGTCAC TGCTGGACCT GGTGTATCAT TTGTCTCTTG TGCCTGGTGA TCTGATATTG TTAATTCATT TGTTACCAGT TAGGCAATAG CATAATTATT TGTCTGAATA CGATATGAAT CATGAGCAAT TAGTCATTTT GCTTTGTTGA CTTTGGAGGT GCTATCTAAT GTAGGCCTTA ATCATGCTTA GGCAAGTAGT GATCATCAAA TTTGTAACGG TACCATAAAT GTGATCAGCA TTTTTGAGAT GTCAGTACTT GTGTTATCCT AAGTTCCACT TGTCAATATC CCTGCAGGTA CTGACATGGA AAAATTGAGC CTTATCCAAG TGGCAAGCCT GATAGAGTCA TCAGCAAAGA AAGGGATCAC AGAACTCAGC CTCCGGGGGA AACTGGTCGA CCAGATCGAG TGGCTCCCTG TTTCACTCGG CAAATTGCAA GATGTTACCG AGCTTGATCT TTCCGAGAAT AGGATCATGG CACTCCCATC AACAATTGGC AGCCTTAGAT ATTTGACAAA GCTTGACCTA CACTCAAATC AGCTGATCAA TCTGCCCGAC GCGTTTGGGG AACTCTCCAA CCTAATTGAT CTTGACCTGC ATGCCAACCA GCTTAAGTCT CTTCCTTCAT CATTTGGAAA TCTCACGAGC CTAGCAAACC TTGACCTGAG CTCAAATATG TTGAAGGCTC TTCCAGATTG TTTAGGAAAA TTGGCAAACT TGAGAAGATT AATTGTTGAG ACAAATGAGC TTGAGGAGCT ACCCTATACT ATTGGATCTT GCACATCTCT TGTGGAGCTT AGGTTGGATT TCAATCAGTT AAAAGCCCTT CCAGAGGCCA TTGGGAAGTT GGAGAAGCTG GAAATACTGA CATTGCACTA TAACAGAATC AAAGGATTGC CTACAACAGT GGGTTCACTT TCCAGATTGA GAGAGCTGGA TGTCAGTTTT AATGAGGTTG AAGTAATCCC TGAGAACATT TGCTTTGCGA CAAGTCTTGT GAAGTTGAAT CTCAGCAGGA ATTTTGCAGA CTTAAGAGCA CTGCCGAAAT CAATAGGAAA TCTTGAGATG CTAGAGGAGC TGGACATAAG CAGTAACCAG ATACGGGTAC TGCCAGATTC GTTCAGGTGT CTTTCGAGGC TACGTGTATT TCATGCTGAT GAGACTCCAC TTGAATTTCC ACCAAGAGAA GTTGTAAAGT TAGGGGCTCA GGTACACATT ATACTGCCGT TCTGCCATAT TTGCTTACTT AGTCCTTCGC TTTCTTTAAA TGATTAACAA TGTTTCTTCT GCATGCCAGG CTGTGGTCAA GTATATGAAT GATTTGAATG CTGCAAGAGG AACAAACCAG AAGAAAACAG ATCGGGGAAG CTTCTGGACC TGGCTCTTCT CGCTGTTTGG TTGTTGCAAA AAGAACCAAG AAGTGGGATT GCCAGTATAA CTGAAGCATT TCATCATCTG TATGTATGTT GTGAATTACT CAGGTCTGCA AAGAAAGGAA ACGTGGATAA TTTGGTTCCT CTTGTTTTTT TTGTCCCTTT TTTTTGGTGT GTATATATGT AATTTTGTCA TGTAAGGTCC ATTTCTAGTT ATGCAAGACC TATTAAGATT CATTTCTGTG TGTAACTTCA TTTGTATGAT AGCATGTTAC TGCTTCCATA TTAAAAACTG TCTTACAGC
Locus: Os10g0572300
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Locus: Os10g0572300
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