Locus

Os12g0239900

Description

Similar to PDR-like ABC transporter.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

PDR22

CGSNL Gene Name

PLEIOTROPIC DRUG RESISTANCE 22

Oryzabase Gene Symbol Synonym(s)

OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2

Oryzabase Gene Name Synonym(s)

ABC transporter superfamily ABCG subgroup member 49, pleiotropic drug resistance 22

Transcript Evidence

AK107869 (DDBJ, Best hit)

Protein Evidence

Q8GU83 (UniProt)

Literature

Note

Manual Curation

Full-length cDNA

002-134-C05 (Online Clone Ordering)

Expression Databases

TENOR (Os12t0239900-01)

RiceXPro (AK107869)

Others

Oryzabase (12022)

KEGG (Os12t0239900-01)

Transcript

553 bp

>Os12t0239900-01 Similar to PDR-like ABC transporter.
ACGCTGAATCTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTC
TTTGGAGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAG
CTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTAC
GGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAG
GAAAATTTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGA
TTCGAATACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATAT
TGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAG
TCCAAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCT
TGTTTGGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACATACTATCATGGCA
AAGTTTTATCTTC

CDS

219 bp

>Os12t0239900-01 Similar to PDR-like ABC transporter.
ACGCTGAATCTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTC
TTTGGAGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAG
CTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTAC
GGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAG

Protein

72 aa

>Os12t0239900-01 Similar to PDR-like ABC transporter.
TLNLLFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILY
GYSISRFNFQKR*

CDS

chr12:7731743..7731961 (- strand) : 219 bp

3'UTR

chr12:7731409..7731742 (- strand) : 334 bp

FASTA

>Os12t0239900-01 class=Sequence position=chr12:7731409..7731961 (- strand)
ACGCTGAATC TCCTCTTCAC CACACAGTTC GGATTCGAGG ACAACAGCAA CATCCTTGTC TTTGGAGAGA CTAAACCGAT
CGCAGCCTTC GTAAGAGACT ATTTTGGTTT CCACCGCGAG CTGCTACCAC TTTCTGCCAT AATATTGGCA GCATACCCTG
TCCTCTTCGC CATCCTGTAC GGGTACAGCA TCTCAAGGTT TAACTTCCAA AAGAGATAGA CAGATCAGGG GTGTAAATAG
GAAAATTTGA ACAGGATAAT AACTGAACCA CATGTCCATT ACCATATAAG TTGAGCCGGA TTCGAATACG AACCGGATAT
CTGTTGAATG TGGATATGGA TACAGATTCA GATTAGATAT TGGTCTGTTT CAATCAGATT CGGTTATCCA CTAATTGCAA
TGATGACAAA AATTTAATAG TCCAAGAGAC TTATATACTA TTGTATTAAA TTTAAGTGAG AAGAAATGTA ATGGCAGTCT
TGTTTGGTTA CAGCAATATG AAGGCTGAAC TTCCAAAAGT AAAAACATAC TATCATGGCA AAGTTTTATC TTC

Locus: Os12g0239900

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

Link to RiceXPro

Graph view ()

Locus: Os12g0239900

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

Link to RiceFREND

MR list ()

HyperTree ()