Locus
Os12g0512700
Description
ABC transporter-like domain containing protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
PDR23
CGSNL Gene Name
PLEIOTROPIC DRUG RESISTANCE 23
Oryzabase Gene Symbol Synonym(s)
OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2
Oryzabase Gene Name Synonym(s)
ABC transporter superfamily ABCG subgroup member 50, pleiotropic drug resistance 23
Transcript Evidence
AK103110 (DDBJ, Best hit)
AK102367 (DDBJ, Best hit)
Protein Evidence
Literature
Note
Manual Curation
February 18, 2020
Gene Ontology (GO)
Cellular Component: membrane (GO:0016020)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATPase activity (GO:0016887)
Functional domain (InterPro)
ABC transporter-like (IPR003439)
ABC-2 type transporter (IPR013525)
Plant PDR ABC transporter associated (IPR013581)
Full-length cDNA
J033119C07 (Online Clone Ordering)
J033091K10 (Online Clone Ordering)
Expression Databases
TENOR (Os12t0512700-01)
Others
Oryzabase (12023)
Transcript |
2681 bp |
>Os12t0512700-01 ABC transporter-like domain containing protein. CAGCGCCGCCGCAATTCGCTCGCCGCCGCCGCCGCcgccggtgggcggtggcttgccacc tccctctccgcctccggcagccttctacgctgcccgtctccgTCTCTTCTCCCTTCACCC AAATCCCCAGACATTCGGCCATGGCCCCCCCTGACTCTTCTCTCTTCTTGGCCGCCCGCC GCGGCGCTGCCTGACGAGGATCGGCGGCTCGGGGCGGAGGAACCCCGAGCTTCCGGCGCG AGGGGGTGGCCTCCTCCTCCTCCTCATCCTCATCGTCGCCGCCGCCCACGTCGTCTCGCC CTCGGCCAACGCCCGAGCTCGACCACAAACTAAAAATCAAGAACAAGAAAGTTTTATGTT CTGACAAACTGAATGTGAAGATGCAAAGCTTTTACAGGTAACAGGGGATATCTCTTACAA TGGCTATCAGCTTGATGAATTTGTGCCTGAGAAAACAGCCGCGTATATCAGCCAATACGA TTTACACATTCCTGAGATGACTGTGAGGGAGACTTTGGACTTCTCATCCCGGTGCCAAGG TGTTGGAAGAAGACCAAAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGAT CATACCTGATGCGGACATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAG AAGCCTACAGACAGACTATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGAT GGTTGGGGATGCAATGATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGC TGAGATGATTGTGGGGCCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGA TAGCTCTACCACTTTTCAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTA CACCATGGTTATTTCACTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCT GATATTAATGGCAGAAGGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTT TTTTGAGGAGTGTGGGTTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGA GATCTTGTCCTGCAAGGACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATA TATATCACCCCATGAATTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGA AGAACCAATTGTTTCTCCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATA TTCTCTGCAAAAACTGGAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAA AAGGAGTATGTTTGTTTATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAAC AATGTCTGTGTTCCTTCGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATAT GGGAGCATTGTTTTTTTCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCAT GCAGATTAGGAGACTCCCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATG GGCATATGCAATACCAGCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGT ATGGATATGTATCACATATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTG CCAATTTCTGATGCTTTGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGC TTCATACTTCCAAACACCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTT CCTCATGTTTGGAGGCTTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGG ATTTTGGATTTCTCCAATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGC GCCAAGATGGCAGAAGGAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAA TCATGGCCTATATTACAGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATC AATCATTTTATTTTATATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGA ATATCATGGAAGTAGGCCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATAT ACGAAAAGAATCTGATGGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTAT GGAACTTCCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCT GAAACAAGGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCG TCCCGGTGTTCTTTCTGCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGA TGTATTAGCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATA TCCCAAGGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACA TTCCCCACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTC TCATGTCGACAAAAAAACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATA TACTGATTTTAATAACAGATAGATAAACAAGAAGCTTACCT
CDS |
2166 bp |
>Os12t0512700-01 ABC transporter-like domain containing protein. ATGACTGTGAGGGAGACTTTGGACTTCTCATCCCGGTGCCAAGGTGTTGGAAGAAGACCA AAAATACTCAAGGAGGTGAGCGCGAGGGAGAGCGCGGCGGGGATCATACCTGATGCGGAC ATAGATATATACATGAAGGCTATATCAGTTGAAGCTTCAAAGAGAAGCCTACAGACAGAC TATATTTTGAAGATCATGGGGCTAGAGATATGCGCAGACACGATGGTTGGGGATGCAATG ATAAGAGGACTATCAGGGGGGCAGAAGAAAAGATTAACCACAGCTGAGATGATTGTGGGG CCTGCAAGAGCATACTTTATGGATGAAATATCAAATGGTCTGGATAGCTCTACCACTTTT CAAATAATAAGTTGTTTCCAGCAACTGACGAACATCAGCGAGTACACCATGGTTATTTCA CTTCTTCAACCAACACCTGAGGTATTTGATCTTTTTGATGACCTGATATTAATGGCAGAA GGGAAAATTATATACCATGGCCCTCGAAATGAAGCTCTGAATTTTTTTGAGGAGTGTGGG TTCATATGCCCAGAAAGAAAAGAGGTAGCTGACTTTCTCCAAGAGATCTTGTCCTGCAAG GACCAACAACAGTACTGGTCTGGTCCAAATGAATCTTACAGATATATATCACCCCATGAA TTATCAAGCATGTTCAAGGAAAATCACAGAGGGAGAAAACTAGAAGAACCAATTGTTTCT CCGAAAAGCGAGTTGGGCAAGGAAGCTTTAGCATTCAATAAATATTCTCTGCAAAAACTG GAAATGTTCAAAGCCTGTGGAGCAAGGGAAGCACTCCTAATGAAAAGGAGTATGTTTGTT TATGTCTTCAAAACAGGCCAGCTTGCCATTATTGCACTCGTAACAATGTCTGTGTTCCTT CGAACTCGCATGACAACAGATTTCACTCACGCAACTTACTATATGGGAGCATTGTTTTTT TCCATCTTAATGATCATGCTAAATGGCACACCAGAGATAAGCATGCAGATTAGGAGACTC CCAAGTTTTTACAAGCAAAAGAGCTATTATTTCTATTCTTCATGGGCATATGCAATACCA GCTTCAGTCCTAAAGGTCCCTGTTTCCATATTAGATTCACTTGTATGGATATGTATCACA TATTACGGTATTGGTTATACAGCTAGTGTTTCGAGGTTCTTCTGCCAATTTCTGATGCTT TGTTTTGTCCATCAATCAGTCACTTCGCTGTATCGATTTATTGCTTCATACTTCCAAACA CCTACTGCGTCTTTCTTCTACCTTTTTCTGGCTCTAACATTCTTCCTCATGTTTGGAGGC TTCACTCTTCCCAAGCCCTCCATGCCAGGATGGTTAAACTGGGGATTTTGGATTTCTCCA ATGACATATGCAGAAATCGGCACAGTTATTAATGAATTCCAAGCGCCAAGATGGCAGAAG GAAACTATTCAAAACATAACAATTGGGAACCGAATCCTGATTAATCATGGCCTATATTAC AGTTGGCACTTTTATTGGATATCCATTGGAGCATTGTTCGGATCAATCATTTTATTTTAT ATCGCTTTTGGATTGGCGCTAGATTATATTACATCTATAGAAGAATATCATGGAAGTAGG CCTATAAAGAGGTTATGTCAAGAACAGGAAAAAGATTCTAATATACGAAAAGAATCTGAT GGTCATTCAAATATTTCCAGAGCAAAGATGACTATACCTGTTATGGAACTTCCAATTACG TTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAACAAGGCTATCCA ACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGTGTTCTTTCT GCACTAATGGGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTAGCAGGAAGG AAAACAGGAGGATATATTGAAGGGGACATAAGAATAGGTGGATATCCCAAGGTGCAAGAA ACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCCCACAGCTCACA GTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTCGACAAAAAA ACAAGATCTGTATGTCCCTTGGAAGTTGGAACAACACAGACATATACTGATTTTAATAAC AGATAG
Protein |
721 aa |
>Os12t0512700-01 ABC transporter-like domain containing protein. MTVRETLDFSSRCQGVGRRPKILKEVSARESAAGIIPDADIDIYMKAISVEASKRSLQTD YILKIMGLEICADTMVGDAMIRGLSGGQKKRLTTAEMIVGPARAYFMDEISNGLDSSTTF QIISCFQQLTNISEYTMVISLLQPTPEVFDLFDDLILMAEGKIIYHGPRNEALNFFEECG FICPERKEVADFLQEILSCKDQQQYWSGPNESYRYISPHELSSMFKENHRGRKLEEPIVS PKSELGKEALAFNKYSLQKLEMFKACGAREALLMKRSMFVYVFKTGQLAIIALVTMSVFL RTRMTTDFTHATYYMGALFFSILMIMLNGTPEISMQIRRLPSFYKQKSYYFYSSWAYAIP ASVLKVPVSILDSLVWICITYYGIGYTASVSRFFCQFLMLCFVHQSVTSLYRFIASYFQT PTASFFYLFLALTFFLMFGGFTLPKPSMPGWLNWGFWISPMTYAEIGTVINEFQAPRWQK ETIQNITIGNRILINHGLYYSWHFYWISIGALFGSIILFYIAFGLALDYITSIEEYHGSR PIKRLCQEQEKDSNIRKESDGHSNISRAKMTIPVMELPITFHNLNYYIDTPPEMLKQGYP TKRLQLLNNITGALRPGVLSALMGVSGAGKTTLLDVLAGRKTGGYIEGDIRIGGYPKVQE TFVRILGYCEQADIHSPQLTVEESVTYSAWLRLPSHVDKKTRSVCPLEVGTTQTYTDFNN R*
5'UTR
chr12:19836568..19837063 (- strand) : 496 bp
CDS
chr12:19836507..19836567 (- strand) : 61 bp
chr12:19836327..19836403 (- strand) : 77 bp
chr12:19836047..19836100 (- strand) : 54 bp
chr12:19835873..19835963 (- strand) : 91 bp
chr12:19835466..19835767 (- strand) : 302 bp
chr12:19835089..19835364 (- strand) : 276 bp
chr12:19834697..19835010 (- strand) : 314 bp
chr12:19834444..19834604 (- strand) : 161 bp
chr12:19834267..19834370 (- strand) : 104 bp
chr12:19834025..19834178 (- strand) : 154 bp
chr12:19833457..19833564 (- strand) : 108 bp
chr12:19833247..19833320 (- strand) : 74 bp
chr12:19832753..19833142 (- strand) : 390 bp
3'UTR
chr12:19832734..19832752 (- strand) : 19 bp
FASTA
>Os12t0512700-01 class=Sequence position=chr12:19832734..19837063 (- strand) CAGCGCCGCC GCAATTCGCT CGCCGCCGCC GCCGCcgccg gtgggcggtg gcttgccacc tccctctccg cctccggcag ccttctacgc tgcccgtctc cgTCTCTTCT CCCTTCACCC AAATCCCCAG ACATTCGGCC ATGGCCCCCC CTGACTCTTC TCTCTTCTTG GCCGCCCGCC GCGGCGCTGC CTGACGAGGA TCGGCGGCTC GGGGCGGAGG AACCCCGAGC TTCCGGCGCG AGGGGGTGGC CTCCTCCTCC TCCTCATCCT CATCGTCGCC GCCGCCCACG TCGTCTCGCC CTCGGCCAAC GCCCGAGCTC GACCACAAAC TAAAAATCAA GAACAAGAAA GTTTTATGTT CTGACAAACT GAATGTGAAG ATGCAAAGCT TTTACAGGTA ACAGGGGATA TCTCTTACAA TGGCTATCAG CTTGATGAAT TTGTGCCTGA GAAAACAGCC GCGTATATCA GCCAATACGA TTTACACATT CCTGAGATGA CTGTGAGGGA GACTTTGGAC TTCTCATCCC GGTGCCAAGG TGTTGGAAGA AGACCAAGTA AGTGTAATGG ACATTCTTCA CCAAAATTCT TGATCAGAAA AAGAAAAAGT TCTTGATTAA TTGCAATAAT TTCTTACTCA CTGATTTTGT TTGCTCAAAG AAATACTCAA GGAGGTGAGC GCGAGGGAGA GCGCGGCGGG GATCATACCT GATGCGGACA TAGATATATA CATGAAGGTA AAAGATGTGT TATCCTTTTA TGCACTGGCT GGCATTATTC TTCCTCACTT CACAAAAAAA AGCAACACCT GATTATTTGA GGTAATACTA ACAATGTAAC CTTTCTTGCT AGAATAATAT TGGGTTGTAG TAAAACTAAG GCAAAGCTTT CAGTAATCAA CATTTCTATT TCTATTTCTA TAATTAAACA TTTTGGTTTT CAAAAGCAAA GTGGCTACTG CAGGCTATAT CAGTTGAAGC TTCAAAGAGA AGCCTACAGA CAGACTATAT TTTGAAGGTA CATTTCCCCA AAACATACAA GTTTAACTTT CAGATAGTGA AAATATACCA ACAAGAATCA CAGTGCCGCT TGAATTGTAG ATCATGGGGC TAGAGATATG CGCAGACACG ATGGTTGGGG ATGCAATGAT AAGAGGACTA TCAGGGGGGC AGAAGAAAAG ATTAACCACA GGTATGGTAA AGCTGATCGA TATTACTTGG AAATACATTC TTCCAAATTA AGGCGATCGA TCGATTACCT TGTGTATAAT CTTAAACTTT CACCTTCTTG CACCAGCTGA GATGATTGTG GGGCCTGCAA GAGCATACTT TATGGATGAA ATATCAAATG GTCTGGATAG CTCTACCACT TTTCAAATAA TAAGTTGTTT CCAGCAACTG ACGAACATCA GCGAGTACAC CATGGTTATT TCACTTCTTC AACCAACACC TGAGGTATTT GATCTTTTTG ATGACCTGAT ATTAATGGCA GAAGGGAAAA TTATATACCA TGGCCCTCGA AATGAAGCTC TGAATTTTTT TGAGGAGTGT GGGTTCATAT GCCCAGAAAG AAAAGAGGTA GCTGACTTTC TCCAAGAGGT AATTTTCCTC AATCACAAGA GCAGCTGCAG CACCTGATTT ATATATAAAT TGCATGTTCA TGAAAACAGT TCTTTTTTTT CTGATTCCGA AACCATTAGA TCTTGTCCTG CAAGGACCAA CAACAGTACT GGTCTGGTCC AAATGAATCT TACAGATATA TATCACCCCA TGAATTATCA AGCATGTTCA AGGAAAATCA CAGAGGGAGA AAACTAGAAG AACCAATTGT TTCTCCGAAA AGCGAGTTGG GCAAGGAAGC TTTAGCATTC AATAAATATT CTCTGCAAAA ACTGGAAATG TTCAAAGCCT GTGGAGCAAG GGAAGCACTC CTAATGAAAA GGAGTATGTT TGTTTATGTC TTCAAAACAG GCCAGGTTAT ACTTCATTCT AAGGCCCTCT TTCCTGTACG AAGTAAATTT TGAGTCCTAA CTGAGGTTTA CTCCTTACTG CAGCTTGCCA TTATTGCACT CGTAACAATG TCTGTGTTCC TTCGAACTCG CATGACAACA GATTTCACTC ACGCAACTTA CTATATGGGA GCATTGTTTT TTTCCATCTT AATGATCATG CTAAATGGCA CACCAGAGAT AAGCATGCAG ATTAGGAGAC TCCCAAGTTT TTACAAGCAA AAGAGCTATT ATTTCTATTC TTCATGGGCA TATGCAATAC CAGCTTCAGT CCTAAAGGTC CCTGTTTCCA TATTAGATTC ACTTGTATGG ATATGTATCA CATATTACGG TATTGGTTAT ACAGCTAGTG TTTCGAGGTA AATAATTTAT TGGAGATTTG GCAAGTTTTC AACGATAAGA ACAAACATTG AGAAACTCTT TAACACAATT TATTTATACC CATTTGTAGG TTCTTCTGCC AATTTCTGAT GCTTTGTTTT GTCCATCAAT CAGTCACTTC GCTGTATCGA TTTATTGCTT CATACTTCCA AACACCTACT GCGTCTTTCT TCTACCTTTT TCTGGCTCTA ACATTCTTCC TCATGTTTGG AGGCTTCACT CTTCCCAAGC GTAAGATAAC CATCGCTCAT TGTGCATATA AACCTAGCAA AAATAAACAT ATTGTGTTAC TTTGTTTTTC CAGCCTCCAT GCCAGGATGG TTAAACTGGG GATTTTGGAT TTCTCCAATG ACATATGCAG AAATCGGCAC AGTTATTAAT GAATTCCAAG CGCCAAGATG GCAGAAGGTG AAATATGTTT TTTTTTCAAA TAAAAAAAAA TGAGTTATCA GCTGCTTTCA AGCATTTACA TCATTGCTAC TTGTATTATT TTCAGGAAAC TATTCAAAAC ATAACAATTG GGAACCGAAT CCTGATTAAT CATGGCCTAT ATTACAGTTG GCACTTTTAT TGGATATCCA TTGGAGCATT GTTCGGATCA ATCATTTTAT TTTATATCGC TTTTGGATTG GCGCTAGATT ATATTACATG TAAGTTTGCT ACCATTGAAC AAAGTGCATA TTTCTCAGAC TCGAGCTCCA TGGTACTCAG GCAGCATAAT TTGACATACA GTGAACTTGG GGTAATGCTT TTGGAAATCT CTATTTTAGG GAATACACCT GGTTGTGATT ACTGGGCGTA ATTTCTGAAA TATCTACTCG ATTTCCGATG TTTTTTGAAT ATATTCACAT AGCAGATtta tatacataat ctgcagatac ctacaatcca ataataaatg acaaaagaaa atacaatttg aaattttgtt caaacttgtt tggagtggtt tatgattaaa ttagacccca caaaattcca tgccatatat cgtgacaaga ctgcagatat ggggatgtag agctggggca ctatggagca ccagttaatt tgactttata tacgcatatt atttaCTTGA GAAACAAATT ATAAATTTGC CTATTTCAGC TATAGAAGAA TATCATGGAA GTAGGCCTAT AAAGAGGTTA TGTCAAGAAC AGGAAAAAGA TTCTAATATA CGAAAAGAAT CTGATGGTCA TTCAAATATT TCCAGAGGTA AAGACATAAA CATCTCAATA TCAAGTAATA GTAAGAAATG AAGGTCCCAC AAAAAAAAGT AACAAACCAA GTTAGCAGAG TTGCGTTTCG AAAGCAAAAT GCATGCTTCT TCAATGCATT GATCTTTTTG CAGCAAAGAT GACTATACCT GTTATGGAAC TTCCAATTAC GTTCCACAAT CTGAACTACT ACATTGATAC CCCACCGGTA ATTAAGAAAG CTCCCTATGT ATTTGATTTT TACAGTTTTT GTGTTTCTCG TCTGGTTCAT ATTTGAAGAT AAAGGTATGT AAGAAATGTA CTCTCTTGTA GGAAATGCTG AAACAAGGCT ATCCAACAAA AAGACTTCAA CTACTTAACA ACATAACTGG TGCATTGCGT CCCGGTGTTC TTTCTGCACT AATGGGTGTC AGTGGAGCCG GGAAGACAAC TCTGCTAGAT GTATTAGCAG GAAGGAAAAC AGGAGGATAT ATTGAAGGGG ACATAAGAAT AGGTGGATAT CCCAAGGTGC AAGAAACATT TGTTAGAATC TTAGGTTACT GTGAGCAAGC CGACATACAT TCCCCACAGC TCACAGTTGA AGAGTCTGTA ACTTATTCTG CTTGGCTTCG TCTACCTTCT CATGTCGACA AAAAAACAAG ATCTGTATGT CCCTTGGAAG TTGGAACAAC ACAGACATAT ACTGATTTTA ATAACAGATA GATAAACAAG AAGCTTACCT
Loading...
Loading...