Locus

Os12g0545900

Description

Conserved hypothetical protein.

RAP-DB Gene Symbol Synonym(s)

RAP-DB Gene Name Synonym(s)

CGSNL Gene Symbol

PMS3

CGSNL Gene Name

PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3

Oryzabase Gene Symbol Synonym(s)

pms3, LDMAR

Oryzabase Gene Name Synonym(s)

photoperiod-sensitive genic male sterility3, long-day-specific male-fertility-associated RNA

Transcript Evidence

AK111270 (DDBJ, Best hit)

Protein Evidence

Q5QLU3 (UniProt)

Literature

Note

Manual Curation

Full-length cDNA

002-180-F11 (Online Clone Ordering)

Expression Databases

TENOR (Os12t0545900-01)

RiceXPro (AK111270)

Others

Oryzabase (2286)

KEGG (Os12t0545900-01)

Transcript

829 bp

>Os12t0545900-01 Conserved hypothetical protein.
agatcgattcctctccttccttcggccttttctcgctccccttcctcctgcgcacgcgtt
ctcccgatgcgccgccgcctcctgctcctcacgccaccgttctgtgccgccggccccgca
agggaccaccgcgccgccccgcctcggaaaccgcctgggcgccgccacctcctgccgccg
tcacctgcgccgacttcgcgaggagccgccgcgtcgcctgccttgggaagccgccgcctg
ccacctgggagcacccgccgtcgaagtccggcgccggttcctcgccgggaaccgccgccg
ccgccgcaagctcctgcccgagctacgacgaacgccgcgccgagcaccacgccgctgcac
gccgcctgcaatgacgcctccagccgcccgtgaactcgccgccccaaaccacgctgccca
cgaaatcagagAGAACGCAGAACAAATCTTTGAAAAGGCAAGCAAGAAGTAGGTGTACGT
GAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCA
CCCACAAATACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAA
GGGCGGAGACAAGAGTAGAGCAGCTAGAGCTTGGGAATTTGATGAAACTACTACTGGCTC
AGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTCATGGGTTGTTAG
ATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAG
TTGAGTTACATTGTTTGTCTTCAAAGTAAAAGAGACAGAAAACTGCCCC

CDS

372 bp

>Os12t0545900-01 Conserved hypothetical protein.
atcgattcctctccttccttcggccttttctcgctccccttcctcctgcgcacgcgttct
cccgatgcgccgccgcctcctgctcctcacgccaccgttctgtgccgccggccccgcaag
ggaccaccgcgccgccccgcctcggaaaccgcctgggcgccgccacctcctgccgccgtc
acctgcgccgacttcgcgaggagccgccgcgtcgcctgccttgggaagccgccgcctgcc
acctgggagcacccgccgtcgaagtccggcgccggttcctcgccgggaaccgccgccgcc
gccgcaagctcctgcccgagctacgacgaacgccgcgccgagcaccacgccgctgcacgc
cgcctgcaatga

Protein

124 aa

>Os12t0545900-01 Conserved hypothetical protein.
IDSSPSFGLFSLPFLLRTRSPDAPPPPAPHATVLCRRPRKGPPRRPASETAWAPPPPAAV
TCADFARSRRVACLGKPPPATWEHPPSKSGAGSSPGTAAAAASSCPSYDERRAEHHAAAR
RLQ*

5'UTR

chr12:22047697..22047698 (+ strand) : 2 bp

CDS

chr12:22047699..22048070 (+ strand) : 372 bp

3'UTR

chr12:22048071..22048127 (+ strand) : 57 bp

chr12:22053809..22054206 (+ strand) : 398 bp

FASTA

>Os12t0545900-01 class=Sequence position=chr12:22047697..22054206 (+ strand)
agatcgattc ctctccttcc ttcggccttt tctcgctccc cttcctcctg cgcacgcgtt ctcccgatgc gccgccgcct
cctgctcctc acgccaccgt tctgtgccgc cggccccgca agggaccacc gcgccgcccc gcctcggaaa ccgcctgggc
gccgccacct cctgccgccg tcacctgcgc cgacttcgcg aggagccgcc gcgtcgcctg ccttgggaag ccgccgcctg
ccacctggga gcacccgccg tcgaagtccg gcgccggttc ctcgccggga accgccgccg ccgccgcaag ctcctgcccg
agctacgacg aacgccgcgc cgagcaccac gccgctgcac gccgcctgca atgacgcctc cagccgcccg tgaactcgcc
gccccaaacc acgctgccca cgaaatcaga ggtaagatct cgcccttgcc ttgtggtttg tttcgattgc gttgttgcaa
tcccgtggtc ctccgctgct tttatttggg aaaaatcgag tcccattcat ggacagatcg taatcctcgt ccgattcccc
ttccgtgctt gactaggtct ctccctcaat ctgtttctct attgtgctat gcatccgagt tggaaacata tccgactcct
tccatgtcac aacctctcca gatcgagtcc tgtgcaatcc gacttcctgc tactcaggct ctggccacgt tccatggtcc
cggcttcaac accaacacgt gcacaccgcc atctccgtga cctcctcagc ctccacgcac ccgtacgacc tctagcgtag
ccacctagcc tcccgctgaa cctcgccagt gacgaatacc gccggtcagt tgcaaccaat gcttattgct gtgctaacac
aattgatcag cgcattgacg gtctgaaatt gactgccctt ctgcttgatt ccgtcgcttt tcatatgtgc gctttctccg
tagcagtctg tcacgcaaat acctcgtcaa cacctccaaa acagcctata ggatccacac gctccgactt ttgattgaac
gccatcaatc taatcgcgag ccgaagccga taagtcgcat gccgtcttcc cagccaccga acgatccgag cgctacgtct
agccgtctcc ctgtcgaacg tagcttatcg aaaggcccgg gccaccccgc ccagagtgtt cgaatccacc gatcgagaac
gccgatcgcc tccagcttca atcaacccga gcatgcggcc gcacgtctcc ctgtcgagag tagctcaccg gaaagtccga
gccacccgcc cgaagtgtcc gacccaccga ttggatcgcc aatcgcttcc gccgccatca acccgagcac cacgtctagt
catctccctg ttgaaagcag ccatcgacgg ttccggccgc cgccagaagt gttcgatcca ccgatcaaga ctccattgat
cgccgccgtg ctccaccttg caccaatgcc cctccctggg cattacagca ggctatgcgg tgtggagcac ctccattgcg
cctctaccat ggaccttctg caggctctga taccacttgt tataaaacca gccctgaaat caacatcggt agctaaaacg
cggaagaaaa cgccattgga gatccaaaac aatgacgaca ccgagacaca atatttggta acggagttca gccgtagcct
acatctccga ggcactgatt acgggctctc ctccccgatc cagcatatac agcgtatcag agttacaacg actcatggcc
ggtcgatgcc ggcagccgct ccctctcgct atgctaagtc gctatgcggt tacaacaggc acgcccctct atttatgaga
gaacctagga tagagtccga ctcatactct agtcctaata cctattacaa ctccaagtcc taaactgtaa ccgactacgt
acacatattc gacacaaact ctaacaGTGG CTATGGTTGG AAAACAATTA TATAACAAGA TCAGATTACC TACGGTTGGA
AGAAAAAGAA ATTGAAAGTG TTGGACCGAT AAAATAATTT GTTTTTCCAA AATTGGTCGG TTCAGTGAAA TAAGCGTGTG
GAGAGTcata ttgtccattc gttttattca aaaacttttg taaaatatgt aaaacataaa aatatattta acaataaatc
aaatgatagg aaaataatta ataattactt aaatttttcg aataagatga acggtcaaac atgttaaaaa aaatcaacgg
cgtcaaatat ttaggaacgg agggagtaCT TTATAAGAAA AATTCCATAT ATACCTCTAA TTTTTTATTG AAAAAGACCG
TCTCATGCCC TGCCATTGTC ATTGCTCACA GCTCCGCCAC CTTGTGCCCC GCCATCGCCG TCGCTCGCTC GCTCGCTCAT
GAGCTGTTGC TTGTTTTGCC GCTGCGACTC GCCGTTCCTA GCCTCGCCGC CGACATATCC ACTCACGAGC TCGCACCCGC
CACCGTCGTC GCCATCGCCT GTTCTCGGCC AGGGTTAGGA TTGGAGCAGC ATAGAGAACA AGCGACGACT ACATAACCTA
GTATATATAG TAGTATTTTT CTTTCAACTA CTTGCAAGCG TGAGCTTCTT CAGTTGACCC AAATTGAACA ACATATTATG
GAATTTATCA GGATGTACGA TCCTTCATTA TTTCTACATC CTCCATTTCA AAATGAGTTA ACCTAttgtt cagatttgca
gtactagcat attcaatatt agattaactt attttggtac gaagagagta catTAATTGT TCATGTTGCT TCCTAACCGA
TAAAAGGAGA ACAAAGAGAA GAGTAACCAT CGTCAATGGA GAAATCCTTT GTCATATCTT ACATACCCAT GAAAGGTTCA
ATGCATCACA AGTGTATTTG TGCAGTGTAC GTAGCCTACG CAAAAATAGG ATTGGGAGTC AAAAGGAAGA AACGAAGCAT
ATCGTGAATT GGTCAGCCAG CCACATTACC AATTTTCTCC GGCAGCATTG AGGTATAGAA ATCATAATAG ACATTAGAGT
CTAGCTCTCG GCTGGTTGAT CTTCCACACA CTGTAACTGT TGGTGTAGTT TAACAAACCG ATGAAGCAAT GTAGTGGAGA
TGCTCTAGTT GTCCAGACGA GAAATGGCGG CACTGAAGCT GGTCAGATCA GGATGAAGCA GCAAAGGCCT GCCGTTGTTG
GCCAAGAAAT TCTGAAACTA TCAAGTACAC CTTCAGGATC AATATATGGT AGCATCATCC TTTTGAAGCG TCGTCTAAAA
TCCTTACGTA CCAAGCCCTG TTAGCTCAGT TTTTCTACTG AACATGAACA CATTTACTTG TCTATAGCTA GCTAGTATTT
GTCGATCCGG AGGTTAGAAA CACAAACAAA AATGATATCG TGGTCCGACC AAAATGGGAC GGACATACCC CACAATGGCG
CCGTGTGGAC CCAACTGAAA CATTGGGTAG TTGGCGACAG CTCTTTTGGG CTGAAACTTC TAAGTTTTCA AGTGATGAGG
TATATTCTAT TAAGTCTGGG CTATATTGCA TACTTATGGA GCATAATGCT GGGATATAGC TAGTCTTGTT GATTTTCATT
TTCTAATAAT CTAATATAGT TGCATGCTTC GCCAGACTCC AACACATGCA TATATTGAAA GCCATCTTAA AACTGACATC
ACTAAGTACT TGCCATACTA CACTATATAT GCACTAATGT GAAATATATA AGTTACTTAG ACTTCTGGTA TCCTACTATC
CTTCATGTTT ACACCCTAGC AGCAAAGATG AGAATTTTTT TTATCTTTTA GACTTTTTTA TTTTCTAATT TTATTAATAG
AACTTTCCAA AACGTATTTC CAAATCTAAA GCTTTTGGCC GCGCTAGCCC GCCTAGCGTG GCCAAATAAC TTTGTTACGC
CACGTGCAGA TGTCGTGGCA GTGTTGTTCT GCCACACCAG CCTCTTGCCT CTCGGCTAGC ATGGCTAAAA GATTCAGTTT
TTGAAAATAT TTATTTGGAA AGATTTATTA ATAAAATTAA AAAAAGTCTA AAAAATAAAA AAAATCGAAA GATGACTCAT
TTATTTGAAA TCTATAACAC TTAATATACA TGTTGTTGCA TACATGGGAT TGAGAGGTAT ATATAGGAAA TAAAACGAAA
TTAAGCTTTA CGTATCTGGG TGTCCAAGAA CGCTTCGATG TATTCTATTG GACGAAGCAT TAACATCATA AGCGGCTACG
GTTGGAAGAA AAAAATTATA TAACAATATC ATAGCTCCTA TGGTTGGAAG AAAAAGAATT GAAAGTCTAC GACCAATAAA
TTAATTTGTT TTTTTTAAAT TGGTCAGTTC GGTAAAATAA ACTAACCGTG TGGAGAGTCA CATTGTTCGC TTGGAATGCT
ACTTTACTGT GTTGTGCTCC CTCATCATGA AAATTGTTTC ACGATGAAAA GCAGTTGTTT CACCATGAAA GGAAATTATA
TGAAAATTGT CATGGGATGA AAACCTGATT GGAACTTGGA AACAGCGAAA TGGCACAAGC AAAGCGCACG TACGCGATGC
GAGGAGACAT ACTCTGCCTT TGTCAATAGG ATGGTTCGCA TGAATCGGAC TACCAGCAAT GACTGAAGCG GAAAAAACGA
AAATACTCAC GCTCGGGCGA TCGGCGCAGG GGGAGCCGGA TCGGGCGCTC CCCCGCGCGC CTCTCCCCTC ACGTGCGTAC
CTGTTGGGCC CAACACTTCT CCCTCCCCtt tttttaaaaa agatgtttca ttataatgtt ttacttttta tagatctaat
gttTTACCAA TGAGAGGGAG GGAGAGAGCG GCGGCATCTT GGCTACAGCC AACATTGCCC AAGTACAACG CATCCTCCGC
TGGTGCCGCG CTCGTCGTCG CCACCATCTC CTCCTCAATG CTGCGCGGCC TTCGCGCGCC GCTTGCCGTC CACCACCACG
CCCCGACCAC TGCTCGCCAT GGCCACTGCG TCCCGCCATG CGGAGGCAAA GAAAGGGCGT GGCAGAGCGG ATCCGGTGCC
GACGAGGTGG ATGGCGACAA GCGGCGGGGA AGACAGGGAG AGATTGGCGG CGGGAGAGAG AGGCGCCGTG TGGAGGGAGA
GAGAGAGAGA GGGAGAGAGT GGCGATGAGA GTGAGGGAGG AGACCGTCGC TGGGAAAAAA AAGAGGAGGG TGTCGTAGAG
AGGGAGAAGA GAGGGGTAGT ACAGAAAAAT ACCCACTGTG GGCTTTTTGG GTTGGGACAC CCATTGTGGG TTtgtgtatc
ttcaccgagt tgcttcaaat tttgaaaacc ccacctaggc gtagcctcca ttgagagatg tgtgcccctg ggagtgccct
cagttagtga gggcactcta gtatggtttt gattgtagat gcccttagCA TATCATGGTC ACTACCAAGC AGAAGTTCAG
CACTACCTTG CGTGGTGTGA AGTGCGCCAA TTTCAAACCA AATGTGAGTA GACTTTGAAA TTAGAGGTGA TGGTAAATCT
ATTTGACCAT TCCCAGCTTC AAAATCGTAG CAATTGTGTA TTAGTTTCCA CATAAGATGA AATATAAACA TTGGATCTAG
CGATTGGTCG ATTGTGAGGT CAGCACGTAG TATGAGGAGA GACAAGAGGA AGCCGGCCAG CGGTTACACT TGTTGTTTAG
TAATGAAAAC GACTCCACCA AACCCAACAT CCGGTGGCTT GCAAAAAGGC CCAGCCCAGT TATATGGGTG ATACAATGAC
ATGTCCTTTG AAATCTAATT TGGGCCCAAC CAAGATGGGC CGCATGGAAA TCCTACATGT GCGTAGATGC ATTGCATATT
TCTATACGCC CCATCTTGTA TGGGTCATAA CTGAGCCACT CCTAGGCTCA CCCAACTGGA ATTTTTTGGG CTTAAATTGT
TGAGATCTTC TTCCAGGTAC CCATTTTGGG TTCAGACTGT GTTAGTGTTT AACTTTAAAG CTTTTTTCTA TTTCTCATCT
CTTCCATCCA CCTCATCAAA AAGATAATGC TTTAAACCCA TTTAATGTTA TTGCTTCGAT AAATTCTTAT ATATATATAT
ATATATATAT CATCCTGATC AAATTCTAAC AGAGAACGCA GAACAAATCT TTGAAAAGGC AAGCAAGAAG TAGGTGTACG
TGAACTATCA GGTAATTAGG AAAACACATA TGGGGAGCAT TGATCAATGA TCTCCTCGTC ACCCACAAAT ACCTTTAGGC
TTGGAAGACA TCAAGAATAC AGTAGGGACA CTTGTATCCA AGGGCGGAGA CAAGAGTAGA GCAGCTAGAG CTTGGGAATT
TGATGAAACT ACTACTGGCT CAGTATAACG GTGTTTAGGC ATGTGTCTTA GGGTTTTTAA TGGAACTTCA TGGGTTGTTA
GATGGCACGA ACATTGAGTT TCTAATTGTT CTATTTGTAT CAGAAGCTAC AACATGTAAA GTTGAGTTAC ATTGTTTGTC
TTCAAAGTAA AAGAGACAGA AAACTGCCCC 

Locus: Os12g0545900

Loading... No data Feature: Raw Normalized or Cy5/Cy3 Ratio
RXP_0001: Spatio-temporal gene expression of various tissues/organs throughout entire growth in the field RXP_0002: Diurnal and circadian gene expression profile of leaf throughout entire growth RXP_0003: Leaf gene expression profile throughout entire growth in the field (12:00) RXP_0004: Leaf gene expression profile throughout entire growth in the field (00:00) RXP_0005: Leaf gene expression profile during sunrise RXP_0006: Leaf gene expression profile during sunset RXP_0007: Root gene expression profile throughout entire growth in the field (12:00) RXP_0008: Root gene expression profile throughout entire growth in the field (00:00) RXP_0009: Diurnal and circadian gene expression profile of root RXP_0010: Gene expression profile during reproductive organ development RXP_0011: Grain gene expression profile at early developmental stage RXP_0012: Embryo and Endosperm gene expression profile at ripening stage RXP_1001: Root gene expression profile in response to abscisic acid RXP_1006: Shoot gene expression profile in response to abscisic acid RXP_1002: Root gene expression profile in response to gibberellin RXP_1007: Shoot gene expression profile in response to gibberellin RXP_1003: Root gene expression profile in response to auxin RXP_1008: Shoot gene expression profile in response to auxin RXP_1004: Root gene expression profile in response to brassinosteroid RXP_1009: Shoot gene expression profile in response to brassinosteroid RXP_1005: Root gene expression profile in response to cytokinin RXP_1010: Shoot gene expression profile in response to cytokinin RXP_1011: Root gene expression profile in response to jasmonic acid RXP_1012: Shoot gene expression profile in response to jasmonic acid

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Locus: Os12g0545900

Loading... No data Hierarchy: 1 2 3 4    MR or MR rank: 1 2 3 4 5 10 15 1 2 3 4

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