Locus
Os12g0545900
Description
Conserved hypothetical protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
PMS3
CGSNL Gene Name
PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3
Oryzabase Gene Symbol Synonym(s)
pms3, LDMAR
Oryzabase Gene Name Synonym(s)
photoperiod-sensitive genic male sterility3, long-day-specific male-fertility-associated RNA
Transcript Evidence
AK111270 (DDBJ, Best hit)
Protein Evidence
Q5QLU3 (UniProt)
Literature
Note
Manual Curation
Full-length cDNA
002-180-F11 (Online Clone Ordering)
Expression Databases
TENOR (Os12t0545900-01)
RiceXPro (AK111270)
Others
Oryzabase (2286)
KEGG (Os12t0545900-01)
Transcript |
829 bp |
>Os12t0545900-01 Conserved hypothetical protein. agatcgattcctctccttccttcggccttttctcgctccccttcctcctgcgcacgcgtt ctcccgatgcgccgccgcctcctgctcctcacgccaccgttctgtgccgccggccccgca agggaccaccgcgccgccccgcctcggaaaccgcctgggcgccgccacctcctgccgccg tcacctgcgccgacttcgcgaggagccgccgcgtcgcctgccttgggaagccgccgcctg ccacctgggagcacccgccgtcgaagtccggcgccggttcctcgccgggaaccgccgccg ccgccgcaagctcctgcccgagctacgacgaacgccgcgccgagcaccacgccgctgcac gccgcctgcaatgacgcctccagccgcccgtgaactcgccgccccaaaccacgctgccca cgaaatcagagAGAACGCAGAACAAATCTTTGAAAAGGCAAGCAAGAAGTAGGTGTACGT GAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCA CCCACAAATACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAA GGGCGGAGACAAGAGTAGAGCAGCTAGAGCTTGGGAATTTGATGAAACTACTACTGGCTC AGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTCATGGGTTGTTAG ATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAG TTGAGTTACATTGTTTGTCTTCAAAGTAAAAGAGACAGAAAACTGCCCC
CDS |
372 bp |
>Os12t0545900-01 Conserved hypothetical protein. atcgattcctctccttccttcggccttttctcgctccccttcctcctgcgcacgcgttct cccgatgcgccgccgcctcctgctcctcacgccaccgttctgtgccgccggccccgcaag ggaccaccgcgccgccccgcctcggaaaccgcctgggcgccgccacctcctgccgccgtc acctgcgccgacttcgcgaggagccgccgcgtcgcctgccttgggaagccgccgcctgcc acctgggagcacccgccgtcgaagtccggcgccggttcctcgccgggaaccgccgccgcc gccgcaagctcctgcccgagctacgacgaacgccgcgccgagcaccacgccgctgcacgc cgcctgcaatga
Protein |
123 aa |
>Os12t0545900-01 Conserved hypothetical protein. IDSSPSFGLFSLPFLLRTRSPDAPPPPAPHATVLCRRPRKGPPRRPASETAWAPPPPAAV TCADFARSRRVACLGKPPPATWEHPPSKSGAGSSPGTAAAAASSCPSYDERRAEHHAAAR RLQ*
5'UTR
chr12:22047697..22047698 (+ strand) : 2 bp
CDS
chr12:22047699..22048070 (+ strand) : 372 bp
3'UTR
chr12:22048071..22048127 (+ strand) : 57 bp
chr12:22053809..22054206 (+ strand) : 398 bp
FASTA
>Os12t0545900-01 class=Sequence position=chr12:22047697..22054206 (+ strand) agatcgattc ctctccttcc ttcggccttt tctcgctccc cttcctcctg cgcacgcgtt ctcccgatgc gccgccgcct cctgctcctc acgccaccgt tctgtgccgc cggccccgca agggaccacc gcgccgcccc gcctcggaaa ccgcctgggc gccgccacct cctgccgccg tcacctgcgc cgacttcgcg aggagccgcc gcgtcgcctg ccttgggaag ccgccgcctg ccacctggga gcacccgccg tcgaagtccg gcgccggttc ctcgccggga accgccgccg ccgccgcaag ctcctgcccg agctacgacg aacgccgcgc cgagcaccac gccgctgcac gccgcctgca atgacgcctc cagccgcccg tgaactcgcc gccccaaacc acgctgccca cgaaatcaga ggtaagatct cgcccttgcc ttgtggtttg tttcgattgc gttgttgcaa tcccgtggtc ctccgctgct tttatttggg aaaaatcgag tcccattcat ggacagatcg taatcctcgt ccgattcccc ttccgtgctt gactaggtct ctccctcaat ctgtttctct attgtgctat gcatccgagt tggaaacata tccgactcct tccatgtcac aacctctcca gatcgagtcc tgtgcaatcc gacttcctgc tactcaggct ctggccacgt tccatggtcc cggcttcaac accaacacgt gcacaccgcc atctccgtga cctcctcagc ctccacgcac ccgtacgacc tctagcgtag ccacctagcc tcccgctgaa cctcgccagt gacgaatacc gccggtcagt tgcaaccaat gcttattgct gtgctaacac aattgatcag cgcattgacg gtctgaaatt gactgccctt ctgcttgatt ccgtcgcttt tcatatgtgc gctttctccg tagcagtctg tcacgcaaat acctcgtcaa cacctccaaa acagcctata ggatccacac gctccgactt ttgattgaac gccatcaatc taatcgcgag ccgaagccga taagtcgcat gccgtcttcc cagccaccga acgatccgag cgctacgtct agccgtctcc ctgtcgaacg tagcttatcg aaaggcccgg gccaccccgc ccagagtgtt cgaatccacc gatcgagaac gccgatcgcc tccagcttca atcaacccga gcatgcggcc gcacgtctcc ctgtcgagag tagctcaccg gaaagtccga gccacccgcc cgaagtgtcc gacccaccga ttggatcgcc aatcgcttcc gccgccatca acccgagcac cacgtctagt catctccctg ttgaaagcag ccatcgacgg ttccggccgc cgccagaagt gttcgatcca ccgatcaaga ctccattgat cgccgccgtg ctccaccttg caccaatgcc cctccctggg cattacagca ggctatgcgg tgtggagcac ctccattgcg cctctaccat ggaccttctg caggctctga taccacttgt tataaaacca gccctgaaat caacatcggt agctaaaacg cggaagaaaa cgccattgga gatccaaaac aatgacgaca ccgagacaca atatttggta acggagttca gccgtagcct acatctccga ggcactgatt acgggctctc ctccccgatc cagcatatac agcgtatcag agttacaacg actcatggcc ggtcgatgcc ggcagccgct ccctctcgct atgctaagtc gctatgcggt tacaacaggc acgcccctct atttatgaga gaacctagga tagagtccga ctcatactct agtcctaata cctattacaa ctccaagtcc taaactgtaa ccgactacgt acacatattc gacacaaact ctaacaGTGG CTATGGTTGG AAAACAATTA TATAACAAGA TCAGATTACC TACGGTTGGA AGAAAAAGAA ATTGAAAGTG TTGGACCGAT AAAATAATTT GTTTTTCCAA AATTGGTCGG TTCAGTGAAA TAAGCGTGTG GAGAGTcata ttgtccattc gttttattca aaaacttttg taaaatatgt aaaacataaa aatatattta acaataaatc aaatgatagg aaaataatta ataattactt aaatttttcg aataagatga acggtcaaac atgttaaaaa aaatcaacgg cgtcaaatat ttaggaacgg agggagtaCT TTATAAGAAA AATTCCATAT ATACCTCTAA TTTTTTATTG AAAAAGACCG TCTCATGCCC TGCCATTGTC ATTGCTCACA GCTCCGCCAC CTTGTGCCCC GCCATCGCCG TCGCTCGCTC GCTCGCTCAT GAGCTGTTGC TTGTTTTGCC GCTGCGACTC GCCGTTCCTA GCCTCGCCGC CGACATATCC ACTCACGAGC TCGCACCCGC CACCGTCGTC GCCATCGCCT GTTCTCGGCC AGGGTTAGGA TTGGAGCAGC ATAGAGAACA AGCGACGACT ACATAACCTA GTATATATAG TAGTATTTTT CTTTCAACTA CTTGCAAGCG TGAGCTTCTT CAGTTGACCC AAATTGAACA ACATATTATG GAATTTATCA GGATGTACGA TCCTTCATTA TTTCTACATC CTCCATTTCA AAATGAGTTA ACCTAttgtt cagatttgca gtactagcat attcaatatt agattaactt attttggtac gaagagagta catTAATTGT TCATGTTGCT TCCTAACCGA TAAAAGGAGA ACAAAGAGAA GAGTAACCAT CGTCAATGGA GAAATCCTTT GTCATATCTT ACATACCCAT GAAAGGTTCA ATGCATCACA AGTGTATTTG TGCAGTGTAC GTAGCCTACG CAAAAATAGG ATTGGGAGTC AAAAGGAAGA AACGAAGCAT ATCGTGAATT GGTCAGCCAG CCACATTACC AATTTTCTCC GGCAGCATTG AGGTATAGAA ATCATAATAG ACATTAGAGT CTAGCTCTCG GCTGGTTGAT CTTCCACACA CTGTAACTGT TGGTGTAGTT TAACAAACCG ATGAAGCAAT GTAGTGGAGA TGCTCTAGTT GTCCAGACGA GAAATGGCGG CACTGAAGCT GGTCAGATCA GGATGAAGCA GCAAAGGCCT GCCGTTGTTG GCCAAGAAAT TCTGAAACTA TCAAGTACAC CTTCAGGATC AATATATGGT AGCATCATCC TTTTGAAGCG TCGTCTAAAA TCCTTACGTA CCAAGCCCTG TTAGCTCAGT TTTTCTACTG AACATGAACA CATTTACTTG TCTATAGCTA GCTAGTATTT GTCGATCCGG AGGTTAGAAA CACAAACAAA AATGATATCG TGGTCCGACC AAAATGGGAC GGACATACCC CACAATGGCG CCGTGTGGAC CCAACTGAAA CATTGGGTAG TTGGCGACAG CTCTTTTGGG CTGAAACTTC TAAGTTTTCA AGTGATGAGG TATATTCTAT TAAGTCTGGG CTATATTGCA TACTTATGGA GCATAATGCT GGGATATAGC TAGTCTTGTT GATTTTCATT TTCTAATAAT CTAATATAGT TGCATGCTTC GCCAGACTCC AACACATGCA TATATTGAAA GCCATCTTAA AACTGACATC ACTAAGTACT TGCCATACTA CACTATATAT GCACTAATGT GAAATATATA AGTTACTTAG ACTTCTGGTA TCCTACTATC CTTCATGTTT ACACCCTAGC AGCAAAGATG AGAATTTTTT TTATCTTTTA GACTTTTTTA TTTTCTAATT TTATTAATAG AACTTTCCAA AACGTATTTC CAAATCTAAA GCTTTTGGCC GCGCTAGCCC GCCTAGCGTG GCCAAATAAC TTTGTTACGC CACGTGCAGA TGTCGTGGCA GTGTTGTTCT GCCACACCAG CCTCTTGCCT CTCGGCTAGC ATGGCTAAAA GATTCAGTTT TTGAAAATAT TTATTTGGAA AGATTTATTA ATAAAATTAA AAAAAGTCTA AAAAATAAAA AAAATCGAAA GATGACTCAT TTATTTGAAA TCTATAACAC TTAATATACA TGTTGTTGCA TACATGGGAT TGAGAGGTAT ATATAGGAAA TAAAACGAAA TTAAGCTTTA CGTATCTGGG TGTCCAAGAA CGCTTCGATG TATTCTATTG GACGAAGCAT TAACATCATA AGCGGCTACG GTTGGAAGAA AAAAATTATA TAACAATATC ATAGCTCCTA TGGTTGGAAG AAAAAGAATT GAAAGTCTAC GACCAATAAA TTAATTTGTT TTTTTTAAAT TGGTCAGTTC GGTAAAATAA ACTAACCGTG TGGAGAGTCA CATTGTTCGC TTGGAATGCT ACTTTACTGT GTTGTGCTCC CTCATCATGA AAATTGTTTC ACGATGAAAA GCAGTTGTTT CACCATGAAA GGAAATTATA TGAAAATTGT CATGGGATGA AAACCTGATT GGAACTTGGA AACAGCGAAA TGGCACAAGC AAAGCGCACG TACGCGATGC GAGGAGACAT ACTCTGCCTT TGTCAATAGG ATGGTTCGCA TGAATCGGAC TACCAGCAAT GACTGAAGCG GAAAAAACGA AAATACTCAC GCTCGGGCGA TCGGCGCAGG GGGAGCCGGA TCGGGCGCTC CCCCGCGCGC CTCTCCCCTC ACGTGCGTAC CTGTTGGGCC CAACACTTCT CCCTCCCCtt tttttaaaaa agatgtttca ttataatgtt ttacttttta tagatctaat gttTTACCAA TGAGAGGGAG GGAGAGAGCG GCGGCATCTT GGCTACAGCC AACATTGCCC AAGTACAACG CATCCTCCGC TGGTGCCGCG CTCGTCGTCG CCACCATCTC CTCCTCAATG CTGCGCGGCC TTCGCGCGCC GCTTGCCGTC CACCACCACG CCCCGACCAC TGCTCGCCAT GGCCACTGCG TCCCGCCATG CGGAGGCAAA GAAAGGGCGT GGCAGAGCGG ATCCGGTGCC GACGAGGTGG ATGGCGACAA GCGGCGGGGA AGACAGGGAG AGATTGGCGG CGGGAGAGAG AGGCGCCGTG TGGAGGGAGA GAGAGAGAGA GGGAGAGAGT GGCGATGAGA GTGAGGGAGG AGACCGTCGC TGGGAAAAAA AAGAGGAGGG TGTCGTAGAG AGGGAGAAGA GAGGGGTAGT ACAGAAAAAT ACCCACTGTG GGCTTTTTGG GTTGGGACAC CCATTGTGGG TTtgtgtatc ttcaccgagt tgcttcaaat tttgaaaacc ccacctaggc gtagcctcca ttgagagatg tgtgcccctg ggagtgccct cagttagtga gggcactcta gtatggtttt gattgtagat gcccttagCA TATCATGGTC ACTACCAAGC AGAAGTTCAG CACTACCTTG CGTGGTGTGA AGTGCGCCAA TTTCAAACCA AATGTGAGTA GACTTTGAAA TTAGAGGTGA TGGTAAATCT ATTTGACCAT TCCCAGCTTC AAAATCGTAG CAATTGTGTA TTAGTTTCCA CATAAGATGA AATATAAACA TTGGATCTAG CGATTGGTCG ATTGTGAGGT CAGCACGTAG TATGAGGAGA GACAAGAGGA AGCCGGCCAG CGGTTACACT TGTTGTTTAG TAATGAAAAC GACTCCACCA AACCCAACAT CCGGTGGCTT GCAAAAAGGC CCAGCCCAGT TATATGGGTG ATACAATGAC ATGTCCTTTG AAATCTAATT TGGGCCCAAC CAAGATGGGC CGCATGGAAA TCCTACATGT GCGTAGATGC ATTGCATATT TCTATACGCC CCATCTTGTA TGGGTCATAA CTGAGCCACT CCTAGGCTCA CCCAACTGGA ATTTTTTGGG CTTAAATTGT TGAGATCTTC TTCCAGGTAC CCATTTTGGG TTCAGACTGT GTTAGTGTTT AACTTTAAAG CTTTTTTCTA TTTCTCATCT CTTCCATCCA CCTCATCAAA AAGATAATGC TTTAAACCCA TTTAATGTTA TTGCTTCGAT AAATTCTTAT ATATATATAT ATATATATAT CATCCTGATC AAATTCTAAC AGAGAACGCA GAACAAATCT TTGAAAAGGC AAGCAAGAAG TAGGTGTACG TGAACTATCA GGTAATTAGG AAAACACATA TGGGGAGCAT TGATCAATGA TCTCCTCGTC ACCCACAAAT ACCTTTAGGC TTGGAAGACA TCAAGAATAC AGTAGGGACA CTTGTATCCA AGGGCGGAGA CAAGAGTAGA GCAGCTAGAG CTTGGGAATT TGATGAAACT ACTACTGGCT CAGTATAACG GTGTTTAGGC ATGTGTCTTA GGGTTTTTAA TGGAACTTCA TGGGTTGTTA GATGGCACGA ACATTGAGTT TCTAATTGTT CTATTTGTAT CAGAAGCTAC AACATGTAAA GTTGAGTTAC ATTGTTTGTC TTCAAAGTAA AAGAGACAGA AAACTGCCCC
Locus: Os12g0545900
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Locus: Os12g0545900
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