Locus
Os12g0545900
Description
Conserved hypothetical protein.
RAP-DB Gene Symbol Synonym(s)
RAP-DB Gene Name Synonym(s)
CGSNL Gene Symbol
PMS3
CGSNL Gene Name
PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3
Oryzabase Gene Symbol Synonym(s)
pms3, LDMAR
Oryzabase Gene Name Synonym(s)
photoperiod-sensitive genic male sterility3, long-day-specific male-fertility-associated RNA
Transcript Evidence
AK100176 (DDBJ, Best hit)
Protein Evidence
Q5QLU3 (UniProt)
Literature
Note
- CDS sequences are different between Build 5 and IRGSP-1.0.
Manual Curation
Full-length cDNA
J023029D09 (Online Clone Ordering)
Expression Databases
TENOR (Os12t0545900-03)
Others
Oryzabase (2286)
Transcript |
1035 bp |
>Os12t0545900-03 Conserved hypothetical protein. cggccttttctcgctccccttcctcctgcgcacgcgttctcccgatgcgccgccgcctcc tgctcctcacgccaccgttctgtgccgccggccccgcaagggaccaccgcgccgccccgc ctcggaaaccgcctgggcgccgccacctcctgccgccgtcacctgcgccgacttcgcgag gagccgccgcgtcgcctgccttgggaagccgccgcctgccacctgggagcacccgccgtc gaagtccggcgccggttcctcgccgggaaccgccgccgccgccgcaagctcctgcccgag ctacgacgaacgccgcgccgagcaccacgccgctgcacgccgcctgcaatgacgcctcca gccgcccgtgaactcgccgccccaaaccacgctgcccacgaaatcagagTGTACGTAGCC TACGCAAAAATAGGATTGGGAGTCAAAAGGAAGAAACGAAGCATATCGTGAATTGGTCAG CCAGCCACATTACCAATTTTCTCCGGCAGCATTGAGGTATAGAAATCATAATAGACATTA GAGTCTAGCTCTCGGCTGGTTGATCTTCCACACACTGTAACTGTTGGTGTAGTTTAACAA ACCGATGAAGCAATGTAGTGGAGATGCTCTAGTTGTCCAGACGAGAAATGGCGGCACTGA AGCTGGTCAGATCAGGATGAAGCAGCAAAGGCCTGCCGTTGTTGGCCAAGAAATTCTGAA ACTATCAAGTACACCTTCAGGATCAATATATGGTAGCATCATCCTTTTGAAGCGTCGTCT AAAATCCTTACGTACCAAGCCCTGTTAGCTCAGTTTTTCTACTGAACATGAACACATTTA CTTGTCTATAGCTAGCTAGTATTTGTCGATCCGGAGGTTAGAAACACAAACAAAAATGAT ATCGTGGTCCGACCAAAATGGGACGGACATACCCCACAATGGCGCCGTGTGGACCCAACT GAAACATTGGGTAGTTGGCGACAGCTCTTTTGGGCTGAAACTTCTAAGTTTTCAAGTGAT GAGGTATATTCTATT
CDS |
351 bp |
>Os12t0545900-03 Conserved hypothetical protein. ggccttttctcgctccccttcctcctgcgcacgcgttctcccgatgcgccgccgcctcct gctcctcacgccaccgttctgtgccgccggccccgcaagggaccaccgcgccgccccgcc tcggaaaccgcctgggcgccgccacctcctgccgccgtcacctgcgccgacttcgcgagg agccgccgcgtcgcctgccttgggaagccgccgcctgccacctgggagcacccgccgtcg aagtccggcgccggttcctcgccgggaaccgccgccgccgccgcaagctcctgcccgagc tacgacgaacgccgcgccgagcaccacgccgctgcacgccgcctgcaatga
Protein |
116 aa |
>Os12t0545900-03 Conserved hypothetical protein. GLFSLPFLLRTRSPDAPPPPAPHATVLCRRPRKGPPRRPASETAWAPPPPAAVTCADFAR SRRVACLGKPPPATWEHPPSKSGAGSSPGTAAAAASSCPSYDERRAEHHAAARRLQ*
5'UTR
chr12:22047719..22047719 (+ strand) : 1 bp
CDS
chr12:22047720..22048070 (+ strand) : 351 bp
3'UTR
chr12:22048071..22048127 (+ strand) : 57 bp
chr12:22050602..22051227 (+ strand) : 626 bp
FASTA
>Os12t0545900-03 class=Sequence position=chr12:22047719..22051227 (+ strand) cggccttttc tcgctcccct tcctcctgcg cacgcgttct cccgatgcgc cgccgcctcc tgctcctcac gccaccgttc tgtgccgccg gccccgcaag ggaccaccgc gccgccccgc ctcggaaacc gcctgggcgc cgccacctcc tgccgccgtc acctgcgccg acttcgcgag gagccgccgc gtcgcctgcc ttgggaagcc gccgcctgcc acctgggagc acccgccgtc gaagtccggc gccggttcct cgccgggaac cgccgccgcc gccgcaagct cctgcccgag ctacgacgaa cgccgcgccg agcaccacgc cgctgcacgc cgcctgcaat gacgcctcca gccgcccgtg aactcgccgc cccaaaccac gctgcccacg aaatcagagg taagatctcg cccttgcctt gtggtttgtt tcgattgcgt tgttgcaatc ccgtggtcct ccgctgcttt tatttgggaa aaatcgagtc ccattcatgg acagatcgta atcctcgtcc gattcccctt ccgtgcttga ctaggtctct ccctcaatct gtttctctat tgtgctatgc atccgagttg gaaacatatc cgactccttc catgtcacaa cctctccaga tcgagtcctg tgcaatccga cttcctgcta ctcaggctct ggccacgttc catggtcccg gcttcaacac caacacgtgc acaccgccat ctccgtgacc tcctcagcct ccacgcaccc gtacgacctc tagcgtagcc acctagcctc ccgctgaacc tcgccagtga cgaataccgc cggtcagttg caaccaatgc ttattgctgt gctaacacaa ttgatcagcg cattgacggt ctgaaattga ctgcccttct gcttgattcc gtcgcttttc atatgtgcgc tttctccgta gcagtctgtc acgcaaatac ctcgtcaaca cctccaaaac agcctatagg atccacacgc tccgactttt gattgaacgc catcaatcta atcgcgagcc gaagccgata agtcgcatgc cgtcttccca gccaccgaac gatccgagcg ctacgtctag ccgtctccct gtcgaacgta gcttatcgaa aggcccgggc caccccgccc agagtgttcg aatccaccga tcgagaacgc cgatcgcctc cagcttcaat caacccgagc atgcggccgc acgtctccct gtcgagagta gctcaccgga aagtccgagc cacccgcccg aagtgtccga cccaccgatt ggatcgccaa tcgcttccgc cgccatcaac ccgagcacca cgtctagtca tctccctgtt gaaagcagcc atcgacggtt ccggccgccg ccagaagtgt tcgatccacc gatcaagact ccattgatcg ccgccgtgct ccaccttgca ccaatgcccc tccctgggca ttacagcagg ctatgcggtg tggagcacct ccattgcgcc tctaccatgg accttctgca ggctctgata ccacttgtta taaaaccagc cctgaaatca acatcggtag ctaaaacgcg gaagaaaacg ccattggaga tccaaaacaa tgacgacacc gagacacaat atttggtaac ggagttcagc cgtagcctac atctccgagg cactgattac gggctctcct ccccgatcca gcatatacag cgtatcagag ttacaacgac tcatggccgg tcgatgccgg cagccgctcc ctctcgctat gctaagtcgc tatgcggtta caacaggcac gcccctctat ttatgagaga acctaggata gagtccgact catactctag tcctaatacc tattacaact ccaagtccta aactgtaacc gactacgtac acatattcga cacaaactct aacaGTGGCT ATGGTTGGAA AACAATTATA TAACAAGATC AGATTACCTA CGGTTGGAAG AAAAAGAAAT TGAAAGTGTT GGACCGATAA AATAATTTGT TTTTCCAAAA TTGGTCGGTT CAGTGAAATA AGCGTGTGGA GAGTcatatt gtccattcgt tttattcaaa aacttttgta aaatatgtaa aacataaaaa tatatttaac aataaatcaa atgataggaa aataattaat aattacttaa atttttcgaa taagatgaac ggtcaaacat gttaaaaaaa atcaacggcg tcaaatattt aggaacggag ggagtaCTTT ATAAGAAAAA TTCCATATAT ACCTCTAATT TTTTATTGAA AAAGACCGTC TCATGCCCTG CCATTGTCAT TGCTCACAGC TCCGCCACCT TGTGCCCCGC CATCGCCGTC GCTCGCTCGC TCGCTCATGA GCTGTTGCTT GTTTTGCCGC TGCGACTCGC CGTTCCTAGC CTCGCCGCCG ACATATCCAC TCACGAGCTC GCACCCGCCA CCGTCGTCGC CATCGCCTGT TCTCGGCCAG GGTTAGGATT GGAGCAGCAT AGAGAACAAG CGACGACTAC ATAACCTAGT ATATATAGTA GTATTTTTCT TTCAACTACT TGCAAGCGTG AGCTTCTTCA GTTGACCCAA ATTGAACAAC ATATTATGGA ATTTATCAGG ATGTACGATC CTTCATTATT TCTACATCCT CCATTTCAAA ATGAGTTAAC CTAttgttca gatttgcagt actagcatat tcaatattag attaacttat tttggtacga agagagtaca tTAATTGTTC ATGTTGCTTC CTAACCGATA AAAGGAGAAC AAAGAGAAGA GTAACCATCG TCAATGGAGA AATCCTTTGT CATATCTTAC ATACCCATGA AAGGTTCAAT GCATCACAAG TGTATTTGTG CAGTGTACGT AGCCTACGCA AAAATAGGAT TGGGAGTCAA AAGGAAGAAA CGAAGCATAT CGTGAATTGG TCAGCCAGCC ACATTACCAA TTTTCTCCGG CAGCATTGAG GTATAGAAAT CATAATAGAC ATTAGAGTCT AGCTCTCGGC TGGTTGATCT TCCACACACT GTAACTGTTG GTGTAGTTTA ACAAACCGAT GAAGCAATGT AGTGGAGATG CTCTAGTTGT CCAGACGAGA AATGGCGGCA CTGAAGCTGG TCAGATCAGG ATGAAGCAGC AAAGGCCTGC CGTTGTTGGC CAAGAAATTC TGAAACTATC AAGTACACCT TCAGGATCAA TATATGGTAG CATCATCCTT TTGAAGCGTC GTCTAAAATC CTTACGTACC AAGCCCTGTT AGCTCAGTTT TTCTACTGAA CATGAACACA TTTACTTGTC TATAGCTAGC TAGTATTTGT CGATCCGGAG GTTAGAAACA CAAACAAAAA TGATATCGTG GTCCGACCAA AATGGGACGG ACATACCCCA CAATGGCGCC GTGTGGACCC AACTGAAACA TTGGGTAGTT GGCGACAGCT CTTTTGGGCT GAAACTTCTA AGTTTTCAAG TGATGAGGTA TATTCTATT
Locus: Os12g0545900
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Locus: Os12g0545900
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