Locus
Os12g0631100
Description
Small GTPase, Storage protein trafficking
RAP-DB Gene Symbol Synonym(s)
GLUP4, glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a
RAP-DB Gene Name Synonym(s)
GLUTELIN PRECURSOR 4, glutelin precursor4, glutelin precursor 4, glutelin precursor-4, small GTP-binding protein OsRab5B2, small GTP-binding protein OsRab5a, glutelin precursor mutant4, glutelin precursor accumulation 1
CGSNL Gene Symbol
GLUP4
CGSNL Gene Name
GLUTELIN PRECURSOR 4
Oryzabase Gene Symbol Synonym(s)
glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
Oryzabase Gene Name Synonym(s)
glutelin precursor4, glutelin precursor 4, glutelin precursor-4, small GTP-binding protein OsRab5B2, small GTP-binding protein OsRab5a, glutelin precursor mutant4, glutelin precursor accumulation 1
Transcript Evidence
AY029301 (Genbank)
AJ292320 (Genbank)
AK061116 (Genbank)
Protein Evidence
Q94IR3 (UniProt)
Q9FEV1 (UniProt)
Q0ILQ6 (UniProt)
Literature
PMID: 21105928
Note
Manual Curation
December 16, 2010
Gene Ontology (GO)
Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
Functional domain (InterPro)
Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Full-length cDNA
006-207-E04 (Online Clone Ordering)
Expression Databases
TENOR (Os12t0631100-01)
RiceXPro (AK061116)
Others
Oryzabase (651)
KEGG (Os12t0631100-01)
Transcript |
1044 bp |
>Os12t0631100-01 Small GTPase, Storage protein trafficking AGAGAAGCAAACCCAACAAAAAAAAAAAAAGAATTTTCAGGTTTTCTTCTCGCTTTCACC GGAGAAGGAGAAGGAGAGGAAGGTGTTGATCGAATCCTCCTCCAATCGCGCGCGATTCGA TCCCCGTTGCTGGCCGCTCGCTCGCTCGATCCCTCATCCGATCTGAATCCCCCGATCTGA TGGCGGCCAACCCCGGCAACAAGATCCGCAACGCCAAGCTGGTTCTTCTTGGAGATGTGG GCACGGGCAAGTCGAGCCTCGTTCTCCGGTTTGTGAAGGGCCAGTTTGTTGAGTTCCAGG AGTCCACCATCGGCGCGGCCTTCTTCTCGCAAACCTTGGCGGTTAACGATGAGACGGTGA AGTTCGAAATCTGGGATACTGCAGGGCAGGAGAGGTATCATAGCTTGGCTCCGATGTACT ATCGGGGTGCGGCTGCCGCGATAGTTGTCTACGACATCACAAATGCGGCCTCTTTCACAC GTGCAAAAAAATGGGTTCAAGAACTTCAAGCGCAAGgaaacccaaacacgataatggctc ttgctggtaacaaggctgatatggtagaggcgaggcaggtgccagcagaaGAGGCAAAGA CCTACGCACAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACGGCGATCAATG TGAACGATGTATTCCACGAGATCGCAAAGAGATTGCTTCAAGGACAGCAGGCTCAAGACA CACCGGCTGGAATGGTTCTCAACCAGAGACCAGCTGAGAGGATGGTGAGCAGTTCTTCAT GCTGCTCATAATTCAAGTGTGGAGTATGTGACAACTACATAATGCCATGGCCTGAAATCC AGGAGAAGTGTGTATGCAtcagagatgcacacaaagcttgtaaagtggctgctgccatcc cagctgctgtttcttattttgtcatgttcgttctgtaaaTGTGAATACTAGGGTGTCGCT GCAGAAATTCAGATGTATTACTACAGTGTATGCTCTTGCTTAAGTATTTCTCGACACTGA AACAGAGTAAAGCAAAGTCTAGTC
CDS |
612 bp |
>Os12t0631100-01 Small GTPase, Storage protein trafficking ATGGCGGCCAACCCCGGCAACAAGATCCGCAACGCCAAGCTGGTTCTTCTTGGAGATGTG GGCACGGGCAAGTCGAGCCTCGTTCTCCGGTTTGTGAAGGGCCAGTTTGTTGAGTTCCAG GAGTCCACCATCGGCGCGGCCTTCTTCTCGCAAACCTTGGCGGTTAACGATGAGACGGTG AAGTTCGAAATCTGGGATACTGCAGGGCAGGAGAGGTATCATAGCTTGGCTCCGATGTAC TATCGGGGTGCGGCTGCCGCGATAGTTGTCTACGACATCACAAATGCGGCCTCTTTCACA CGTGCAAAAAAATGGGTTCAAGAACTTCAAGCGCAAGgaaacccaaacacgataatggct cttgctggtaacaaggctgatatggtagaggcgaggcaggtgccagcagaaGAGGCAAAG ACCTACGCACAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACGGCGATCAAT GTGAACGATGTATTCCACGAGATCGCAAAGAGATTGCTTCAAGGACAGCAGGCTCAAGAC ACACCGGCTGGAATGGTTCTCAACCAGAGACCAGCTGAGAGGATGGTGAGCAGTTCTTCA TGCTGCTCATAA
Protein |
203 aa |
>Os12t0631100-01 Small GTPase, Storage protein trafficking MAANPGNKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETV KFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNPNTIMA LAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIAKRLLQGQQAQD TPAGMVLNQRPAERMVSSSSCCS*
5'UTR
chr12:27022013..27022191 (+ strand) : 179 bp
CDS
chr12:27022192..27022233 (+ strand) : 42 bp
chr12:27022497..27022574 (+ strand) : 78 bp
chr12:27022670..27022837 (+ strand) : 168 bp
chr12:27023697..27023745 (+ strand) : 49 bp
chr12:27023947..27024020 (+ strand) : 74 bp
chr12:27024555..27024648 (+ strand) : 94 bp
chr12:27024787..27024893 (+ strand) : 107 bp
3'UTR
chr12:27024894..27025146 (+ strand) : 253 bp
FASTA
>Os12t0631100-01 class=Sequence position=chr12:27022013..27025146 (+ strand) AGAGAAGCAA ACCCAACAAA AAAAAAAAAA GAATTTTCAG GTTTTCTTCT CGCTTTCACC GGAGAAGGAG AAGGAGAGGA AGGTGTTGAT CGAATCCTCC TCCAATCGCG CGCGATTCGA TCCCCGTTGC TGGCCGCTCG CTCGCTCGAT CCCTCATCCG ATCTGAATCC CCCGATCTGA TGGCGGCCAA CCCCGGCAAC AAGATCCGCA ACGCCAAGCT GGTGAGGAAT CAAACGTCTC CCTCAATTTG GTTTCTTGAT TTGTTTTTGT TTCCCCCTGG ATTTAGGGCT GATGATATTT CCCCCTAAGA TCCCTCCTTG TTGGTCGCGA TTAGATTGAT GAACTGATTC CCCCTTATTA TGATCGTAAA ACAAGAACTC AATCTTTACT TATTGGCATC ATGTGCTCAT GTTGTTCATG TATCACGAAT TCCGGGTCTT GGGAGTATGT TGGTATGCGT TTACTAACAG TGTTGATTAA CCAGGTTCTT CTTGGAGATG TGGGCACGGG CAAGTCGAGC CTCGTTCTCC GGTTTGTGAA GGGCCAGTTT GTTGAGTTCC AGGTGAATTT CTTTTACACG TGAACTACTA TGACCTAAGA TTGAGCAGGT TTGGTGTGTT GGGATAGGCT TGATTTTGTT GGTTCATTCG GATGCAGGAG TCCACCATCG GCGCGGCCTT CTTCTCGCAA ACCTTGGCGG TTAACGATGA GACGGTGAAG TTCGAAATCT GGGATACTGC AGGGCAGGAG AGGTATCATA GCTTGGCTCC GATGTACTAT CGGGGTGCGG CTGCCGCGAT AGTTGTCTAC GACATCACAA ATGCGGTTAG TACAAGACTA AGTGACTTGC TTGAATTTTA ATTAAGTTGT ACATCTTGAT GATAGTTTCT CAAAGTTTTG ATTTAATGCA ATCATGCCTG CATATCACTG AAAATTATAA GTACGGCACC ACAGCCGCGA TTGGTAGAAA TTACTAACAG TCTAATAATA TAATTTACGC CATTGAAACC AGAATTACGA TTAGTAAGTA TTGGTAAAAT CACCCCTTCT CTGTGATTAA CATATCGAAC CAAGTATTCA TGATAATCGT ACACCAACTT TGACATTTTA ATCCATCATC TTTTATTGTC ACAGAAGATT CGAACTTCCT ACATATAGTT TTAGGTTATA TTGCTCTTCT GGTCTTGGTT CAAGTGTGGC CATGTTTTCC CAGATGATAG ACTGATGAGT TGGTTCTGCC ATTACCAATT AGCAACTCCC ATGTCCTGGC GTTATGGCAC ACTGATAGTA GATCAACTAG TTATCTTCAC TGTTTTTGCA CCTTGTTTGC ATCTTATGAG CAAGCCCTAT TCGGAGAAGA TACTGTATCT ATTGTGTGCC CTTACTTGAA CGGAGGAACC CTTCAATTCA CGGTCTTGCG ATCTTATGTA TTAGCATATT AGCAACGCAT CTCTTTATAT TTTTCTTGCT TCACATGCAG CTTTTAGTGT GTGTTCTTGG TAAACATGAT TTCGATCTGC ATTACAAGTT TTTGGGAAGA AATAAATATA TCATAGTTGA TAGTTTACAC CGTGCACAAA TTTAAGTCTA ACTTCATTCA TACTGTTTTA TCTGAGTATG CTCACTGCTC ATTTTGTAAA AGTGGTGCTA ATAGTGGTTC TCATCATTAT TTTCTGCCTT TTAGGCCTCT TTCACACGTG CAAAAAAATG GGTTCAAGAA CTTCAAGCGC AAGGTAATCC ATTTCTCTTT TTGTAATTTT CACGTATGAT TAGAACATCT GTAAATAAGC AGCTATATTG ATTTTGTACA ACTGCTGGAC CACCTGTACT GTACAGTTCT CTTATAAGTG AACTTGCAAT TTCATAGCAC TATAAGACAT CGTGTCTGTT TTTTTAATAG TCCAGCTAAT ACAAGTTAAC ttctttttat acaggaaacc caaacacgat aatggctctt gctggtaaca aggctgatat ggtagaggcg aggcaggtgc cagcagaagt atgtaatttt gcttctcaaa tccctttttT TGTGATTATA TGTCAAAGCA CTAGTGCATT TCTGCATGAA ACTATCATGT CACTGTGATT TGATATTTGT CACTAGCATC TCATAATGGT GCTTATTTTC CTCATTGCTT CGAGCAAAAG TATAATTTGG CCTTACCAGC TTCAAATTAC TGTATTTTTC TCCTGTCACA TTTGACGATG AATTATCAGT ATGTTGTGAT AGTGAATAGC ACAGAATAAC TATGTCTACT TTTTGTTGCT CCTGCTTCAT TGAAAAAATA ACTCTGAATT GAAGTATTTA ACAAAAAAAT ATATAATAAA AAGTTGTGAA GGCAAGAAGG TTTTCTGTTC TGTGGTGGTC TTTTTTGTTT GCTCATTGCA ACACTGATCT ATTAAATAAT AGATACCATC TTTTGTGTTT GTGGCACTAT CCTGTTCTTG AAATGAATTT CTTTTCCATT ATGACAGCCT CTGCGGCTTG CTTTGTTGAT GCTTATCAAA AGCTCTAATT TGTATGGTGC AGGAGGCAAA GACCTACGCA CAAGAGAATG GCCTTTTCTT CATGGAAACA TCTGCGAAAA CGGCGATCAA TGTGAACGAT GTATTCCACG AGATCGGTGA GTTTAGATCA CAAATCATTT CCGCAGTGGA TTTCTGTACG CCGACAGAGC TGGTTGGTTA TTTGGTGTAC AAAAATGTAC ACAGCCTGCT TCTGCTAATT TCTAAGCGAA TTTGCATTCT TAATCTGATT TCAGCAAAGA GATTGCTTCA AGGACAGCAG GCTCAAGACA CACCGGCTGG AATGGTTCTC AACCAGAGAC CAGCTGAGAG GATGGTGAGC AGTTCTTCAT GCTGCTCATA ATTCAAGTGT GGAGTATGTG ACAACTACAT AATGCCATGG CCTGAAATCC AGGAGAAGTG TGTATGCAtc agagatgcac acaaagcttg taaagtggct gctgccatcc cagctgctgt ttcttatttt gtcatgttcg ttctgtaaaT GTGAATACTA GGGTGTCGCT GCAGAAATTC AGATGTATTA CTACAGTGTA TGCTCTTGCT TAAGTATTTC TCGACACTGA AACAGAGTAA AGCAAAGTCT AGTC
Loading...
Loading...