Home - Download - Os-Nipponbare-Reference-IRGSP-1.0
Annotation data on Os-Nipponbare-Reference-IRGSP-1.0
Genome sequences
- Genome sequence (Os-Nipponbare-Reference-IRGSP-1.0)
Genome assemblies (12 chromosomes)* [DOWNLOAD] (gz file, 116MB, MD5 checksum) Unanchored sequences* [DOWNLOAD] (gz file, 356KB, MD5 checksum) (*) Sequences are masked by Censor with MIPS and MSU repeat data. The masked regions are replaced by lowercase letters.
Gene set (genes supported by FL-cDNAs, ESTs or proteins)
- Gene structure and function information in GFF format.
[DOWNLOAD] (gz file, 13.1MB) - Gene sequences (CDS + UTRs + introns) in FASTA format.
[DOWNLOAD] (gz file, 40.4MB) - Transcript sequences (CDS + UTRs) in FASTA format.
[DOWNLOAD] (gz file, 21.2MB) - CDS sequences in FASTA format.
[DOWNLOAD] (gz file, 12.7MB) - Protein sequences (translated CDSs) in FASTA format.
[DOWNLOAD] (gz file, 7.9MB) - 1 kb upstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 14.1MB) - 2 kb upstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 27.5MB) - 3 kb upstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 40.4MB) - 1 kb downstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 13.8MB) - 2 kb downstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 27MB) - 3 kb downstream sequences of genes in FASTA format.
[DOWNLOAD] (gz file, 39.7MB)
Gene set (computationally predicted genes)
- Gene structure information in GFF format.
[DOWNLOAD] (gz file, 490KB) - CDS sequences in FASTA format.
[DOWNLOAD] (gz file, 1.4MB) - Protein sequences (translated CDSs) in FASTA format.
[DOWNLOAD] (gz file, 885KB)
Miscs
- Table of RAP and MSU's LOC_Os IDs in tab-delimited format.
[DOWNLOAD] (gz file, 323KB) - Table of transcript-IDs and corresponding accession number and species name of transcript evidences in tab-delimited format.
[DOWNLOAD] (gz file, 340KB) - Vegetative and reproductive stage specific sRNAs detected by Meng et al. of Hangzhou Normal University.
[DOWNLOAD] (zip file, 8.1MB)