Agronomically important genes

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Gene symbol Gene name RAP-DB Locus ID Gene Ontology Trait Ontology Plant Ontology
ABA8OX1 ABA-8'-HYDROXYLASE 1 Os02g0703600 GO:0005506 - iron ion binding
GO:0005783 - endoplasmic reticulum
GO:0006950 - response to stress
GO:0009055 - electron carrier activity
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009737 - response to abscisic acid stimulus
GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity
GO:0016021 - integral to membrane
GO:0016491 - oxidoreductase activity
GO:0020037 - heme binding
GO:0022900 - electron transport chain
GO:0030912 - response to deep water
GO:0032940 - secretion by cell
GO:0046345 - abscisic acid catabolic process
GO:0055114 - oxidation reduction
GO:0055114 - oxidation-reduction process
TO:0000103 - deepwater stress
TO:0000276 - drought tolerance
TO:0000286 - submergence sensitivity
TO:0000303 - cold tolerance
TO:0000478 - abscisic acid concentration
TO:0000615 - abscisic acid sensitivity
PO:0009006 - shoot system
ABI5 ABA INSENSITIVE 5 Os01g0859300 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0010152 - pollen maturation
GO:0043565 - sequence-specific DNA binding
GO:0045449 - regulation of transcription
TO:0000053 - pollen sterility
TO:0000253 - seed dormancy
TO:0000420 - fertility related trait
TO:0000429 - salt sensitivity
TO:0000615 - abscisic acid sensitivity
PO:0009049 - inflorescence
PO:0020091 - obsolete microgametophyte
ACTPK1 ACT DOMAIN CONTAINING PROTEIN KINASE 1 Os02g0120100 GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0004712 - protein serine/threonine/tyrosine kinase activity
GO:0004713 - protein tyrosine kinase activity
GO:0005524 - ATP binding
GO:0005829 - cytosol
GO:0005886 - plasma membrane
GO:0006468 - protein phosphorylation
PO:0009005 - root
APO1 ABERRANT PANICLE ORGANIZATION 1 Os06g0665400 GO:0005515 - protein binding
GO:0030154 - cell differentiation
TO:0000050 - inflorescence branching
TO:0000051 - stem strength
TO:0000052 - primary branching of inflorescence
TO:0000068 - lodging incidence
TO:0000089 - panicle type
TO:0000339 - stem thickness
TO:0000371 - yield trait
TO:0000456 - spikelet number
TO:0000499 - flower anatomy and morphology trait
TO:0002639 - shoot branching
TO:0002759 - grain number
PO:0009049 - inflorescence
PO:0009082 - spikelet floret
BU1 BRASSINOSTEROID UPREGULATED 1 Os06g0226500 GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0006351 - transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009723 - response to ethylene stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009753 - response to jasmonic acid stimulus
GO:0040008 - regulation of growth
GO:0046983 - protein dimerization activity
TO:0000172 - jasmonic acid sensitivity
TO:0000173 - ethylene sensitivity
TO:0000206 - leaf angle
TO:0000397 - grain size
TO:0000734 - grain length
TO:0002677 - brassinosteroid sensitivity
TO:0002688 - leaf lamina joint bending
BZR1 BRASSINAZOLE RESISTANT 1 Os07g0580500 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0005773 - vacuole
GO:0006351 - transcription, DNA-dependent
GO:0009737 - response to abscisic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009753 - response to jasmonic acid stimulus
GO:0040008 - regulation of growth
TO:0000166 - gibberellic acid sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0000206 - leaf angle
TO:0000207 - plant height
TO:0000329 - tillering ability
TO:0000615 - abscisic acid sensitivity
TO:0002677 - brassinosteroid sensitivity
D11 DWARF SHINKANEAIKOKU OR NOHRIN 28 Os04g0469800 GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0006826 - iron ion transport
GO:0006879 - cellular iron ion homeostasis
GO:0007275 - multicellular organismal development
GO:0008199 - ferric iron binding
GO:0009055 - electron carrier activity
GO:0009647 - skotomorphogenesis
GO:0009741 - response to brassinosteroid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0016020 - membrane
GO:0016021 - integral to membrane
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0016132 - brassinosteroid biosynthetic process
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 - heme binding
GO:0022900 - electron transport chain
GO:0051512 - positive regulation of unidimensional cell growth
GO:0055114 - oxidation reduction
GO:0055114 - oxidation-reduction process
TO:0000040 - panicle length
TO:0000052 - primary branching of inflorescence
TO:0000139 - grains per panicle
TO:0000145 - internode length
TO:0000172 - jasmonic acid sensitivity
TO:0000207 - plant height
TO:0000371 - yield trait
TO:0000391 - seed size
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000484 - seed shape
TO:0000576 - stem length
TO:0000592 - 1000-dehulled grain weight
TO:0002677 - brassinosteroid sensitivity
TO:0002759 - grain number
TO:0006032 - panicle size
PO:0006321 - primary inflorescence branch
PO:0009010 - seed
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0020122 - inflorescence axis
PO:0020142 - stem internode
D2 DWARF EBISU Os01g0197100 GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0007275 - multicellular organismal development
GO:0009055 - electron carrier activity
GO:0009741 - response to brassinosteroid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009753 - response to jasmonic acid stimulus
GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid
GO:0016021 - integral to membrane
GO:0016132 - brassinosteroid biosynthetic process
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 - heme binding
GO:0055114 - oxidation-reduction process
TO:0000040 - panicle length
TO:0000132 - basal internode diameter
TO:0000135 - leaf length
TO:0000172 - jasmonic acid sensitivity
TO:0000207 - plant height
TO:0000262 - panicle shape
TO:0000299 - leaf lamina color
TO:0000382 - 1000-seed weight
TO:0000391 - seed size
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000567 - tiller angle
TO:0002677 - brassinosteroid sensitivity
TO:0002759 - grain number
TO:0006032 - panicle size
D61 DWARF 61 Os01g0718300 GO:0001578 - microtubule bundle formation
GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0004713 - protein tyrosine kinase activity
GO:0004903 - growth hormone receptor activity
GO:0005515 - protein binding
GO:0005524 - ATP binding
GO:0005886 - plasma membrane
GO:0006468 - protein amino acid phosphorylation
GO:0006468 - protein phosphorylation
GO:0009647 - skotomorphogenesis
GO:0009729 - detection of brassinosteroid stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009753 - response to jasmonic acid stimulus
GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid
GO:0016049 - cell growth
TO:0000040 - panicle length
TO:0000085 - leaf rolling
TO:0000145 - internode length
TO:0000172 - jasmonic acid sensitivity
TO:0000206 - leaf angle
TO:0000207 - plant height
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000576 - stem length
TO:0002677 - brassinosteroid sensitivity
TO:0002688 - leaf lamina joint bending
PO:0006347 - stem intercalary meristem
PO:0009047 - stem
PO:0020033 - coleoptile
PO:0020104 - leaf sheath
PO:0020142 - stem internode
DEP1 DENSE AND ERECT PANICLE 1 Os09g0441900 GO:0005882 - intermediate filament
GO:0007186 - G-protein coupled receptor protein signaling pathway
GO:0051171 - regulation of nitrogen compound metabolic process
TO:0000040 - panicle length
TO:0000050 - inflorescence branching
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000456 - spikelet number
TO:0000734 - grain length
TO:0002731 - grain length to width ratio
TO:0002759 - grain number
DLT DWARF AND LOW-TILLERING Os06g0127800 GO:0006351 - transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0007275 - multicellular organismal development
GO:0009742 - brassinosteroid mediated signaling
TO:0000152 - panicle number
TO:0000206 - leaf angle
TO:0000207 - plant height
TO:0000326 - leaf color
TO:0000329 - tillering ability
TO:0000346 - tiller number
TO:0002616 - flowering time
TO:0002677 - brassinosteroid sensitivity
TO:0002688 - leaf lamina joint bending
DRO1 DEEPER ROOTING 1 Os09g0439800 GO:0009414 - response to water deprivation
GO:0048364 - root development
TO:0000043 - root anatomy and morphology trait
TO:0000276 - drought tolerance
TO:0000656 - root development trait
PO:0007520 - root development stage
DTH2 Days to heading on chromosome 2 Os02g0724000 GO:0005515 - protein binding
GO:0005622 - intracellular
GO:0005634 - nucleus
GO:0005886 - plasma membrane
GO:0008270 - zinc ion binding
GO:0048579 - negative regulation of long-day photoperiodism, flowering
EF1 EARLINESS 1 Os10g0463400 GO:0000156 - two-component response regulator activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005515 - protein binding
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009648 - photoperiodism
GO:0009908 - flower development
GO:0048576 - positive regulation of short-day photoperiodism, flowering
GO:2000028 - regulation of photoperiodism, flowering
TO:0000050 - inflorescence branching
TO:0000137 - days to heading
TO:0000229 - photoperiod sensitivity
TO:0000371 - yield trait
TO:0000469 - days to maturity
TO:0002759 - grain number
TO:0006032 - panicle size
PO:0009010 - seed
PO:0009013 - portion of meristem tissue
PO:0009049 - inflorescence
PO:0009082 - spikelet floret
EHD4 EARLY HEADING DATE 4 Os03g0112700 GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0008270 - zinc ion binding
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0046872 - metal ion binding
GO:2000028 - regulation of photoperiodism, flowering
TO:0002616 - flowering time
FZP FRIZZY PANICLE Os07g0669500 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006351 - transcription, DNA-dependent
GO:0007275 - multicellular organismal development
GO:0010074 - maintenance of meristem identity
GO:0010093 - specification of floral organ identity
GO:0010229 - inflorescence development
GO:0010582 - floral meristem determinacy
GO:0045449 - regulation of transcription
GO:0048497 - maintenance of floral organ identity
TO:0000050 - inflorescence branching
TO:0000089 - panicle type
TO:0000152 - panicle number
TO:0000499 - flower anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0002759 - grain number
PO:0001083 - inflorescence development stage
PO:0009046 - flower
PO:0009049 - inflorescence
G1L5 G1 LIKE PROTEIN 5 Os10g0478000 GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0007275 - multicellular organismal development
GO:0009299 - mRNA transcription
GO:0009416 - response to light stimulus
GATA28 GATA TRANSCRIPTION FACTOR 28 Os11g0187200 GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0005667 - transcription factor complex
GO:0006366 - transcription from RNA polymerase II promoter
GO:0008270 - zinc ion binding
GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0045944 - positive regulation of transcription from RNA polymerase II promoter
GO:2000028 - regulation of photoperiodism, flowering
TO:0000040 - panicle length
TO:0000137 - days to heading
TO:0000207 - plant height
TO:0002616 - flowering time
GHD7 HEADING DATE 7 Os07g0261200 GO:0005515 - protein binding
GO:0009416 - response to light stimulus
GO:0009648 - photoperiodism
GO:0048573 - photoperiodism, flowering
GO:0048579 - negative regulation of long-day photoperiodism, flowering
TO:0000050 - inflorescence branching
TO:0000137 - days to heading
TO:0000207 - plant height
TO:0000229 - photoperiod sensitivity
TO:0000447 - filled grain number
TO:0000557 - secondary branch number
TO:0002759 - grain number
Gn1a GRAIN NUMBER 1A Os01g0197700 GO:0003824 - catalytic activity
GO:0009651 - response to salt stress
GO:0009690 - cytokinin metabolic process
GO:0010229 - inflorescence development
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0016491 - oxidoreductase activity
GO:0019139 - cytokinin dehydrogenase activity
GO:0022900 - electron transport chain
GO:0032940 - secretion by cell
GO:0050660 - flavin adenine dinucleotide binding
GO:0055114 - oxidation-reduction process
TO:0000050 - inflorescence branching
TO:0000052 - primary branching of inflorescence
TO:0000128 - harvest index
TO:0000136 - relative water content
TO:0000142 - secondary branching of inflorescence
TO:0000152 - panicle number
TO:0000207 - plant height
TO:0000296 - vegetative vigor
TO:0000316 - photosynthetic ability
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000440 - grain number per plant
TO:0000456 - spikelet number
TO:0000467 - cell membrane stability
TO:0000495 - chlorophyll content
TO:0000496 - carotenoid content
TO:0000590 - grain weight
TO:0000621 - inflorescence development trait
TO:0002660 - cytokinin content
TO:0002759 - grain number
TO:0006001 - salt tolerance
PO:0000230 - inflorescence meristem
PO:0001083 - inflorescence development stage
GS3 GRAIN SIZE 3 Os03g0407400 GO:0004871 - signal transducer activity
GO:0005834 - heterotrimeric G-protein complex
GO:0007186 - G-protein coupled receptor protein signaling pathway
GO:0007186 - G-protein coupled receptor signaling pathway
GO:0007275 - multicellular organismal development
TO:0000040 - panicle length
TO:0000146 - seed length
TO:0000162 - seed quality
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000391 - seed size
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000590 - grain weight
TO:0000734 - grain length
TO:0002730 - grain shape
TO:0002731 - grain length to width ratio
PO:0009010 - seed
GS5 GRAIN SIZE 5 Os05g0158500 GO:0004185 - serine-type carboxypeptidase activity
GO:0006508 - proteolysis
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000590 - grain weight
TO:0000734 - grain length
TO:0002661 - seed maturation
GSK2 GSK3/SHAGGY-Like Kinase 2 Os05g0207500 GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0005829 - cytosol
GO:0005886 - plasma membrane
GO:0006468 - protein phosphorylation
GO:0009729 - detection of brassinosteroid stimulus
GO:0009733 - response to auxin stimulus
GO:0009739 - response to gibberellin stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009825 - multidimensional cell growth
GO:0009965 - leaf morphogenesis
GO:0042538 - hyperosmotic salinity response
GO:0046827 - positive regulation of protein export from nucleus
TO:0000166 - gibberellic acid sensitivity
TO:0000544 - mesocotyl length
TO:0002677 - brassinosteroid sensitivity
GW2 GRAIN WEIGHT 2 Os02g0244100 GO:0005515 - protein binding
GO:0008270 - zinc ion binding
GO:0016874 - ligase activity
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000590 - grain weight
GW5 GRAIN WIDTH 5 Os05g0187500 GO:0005515 - protein binding
GO:0005886 - plasma membrane
GO:0010229 - inflorescence development
GO:0019722 - calcium-mediated signaling
GO:0042127 - regulation of cell proliferation
GO:0048316 - seed development
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000590 - grain weight
TO:0000621 - inflorescence development trait
TO:0000653 - seed development trait
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
PO:0009049 - inflorescence
GW6a Grain weight on chromosome 6-a Os06g0650300 GO:0004402 - histone acetyltransferase activity
GO:0005634 - nucleus
GO:0008080 - N-acetyltransferase activity
TO:0000396 - grain yield
TO:0000402 - grain width
TO:0000590 - grain weight
TO:0000734 - grain length
TO:0002661 - seed maturation
GW8 GRAIN-WIDTH 8 Os08g0531600 GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0008284 - positive regulation of cell proliferation
GO:0045449 - regulation of transcription
TO:0000162 - seed quality
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000402 - grain width
TO:0000734 - grain length
TO:0002661 - seed maturation
TO:0002730 - grain shape
TO:0002731 - grain length to width ratio
HD1 HEADING DATE 1 Os06g0275000 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005515 - protein binding
GO:0005622 - intracellular
GO:0005634 - nucleus
GO:0006351 - transcription, DNA-dependent
GO:0007623 - circadian rhythm
GO:0008270 - zinc ion binding
GO:0009648 - photoperiodism
GO:0009908 - flower development
GO:0009909 - regulation of flower development
GO:0010229 - inflorescence development
GO:0030154 - cell differentiation
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048571 - long-day photoperiodism
GO:0048572 - short-day photoperiodism
GO:0048576 - positive regulation of short-day photoperiodism, flowering
GO:0048579 - negative regulation of long-day photoperiodism, flowering
TO:0000050 - inflorescence branching
TO:0000137 - days to heading
TO:0000229 - photoperiod sensitivity
TO:0000371 - yield trait
TO:0000448 - filled grain percentage
TO:0000469 - days to maturity
TO:0002759 - grain number
TO:0006032 - panicle size
PO:0009010 - seed
PO:0009013 - portion of meristem tissue
PO:0009025 - vascular leaf
PO:0009049 - inflorescence
PO:0009082 - spikelet floret
HD16 HEADING DATE16 Os03g0793500 GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein phosphorylation
GO:0009648 - photoperiodism
GO:0048573 - photoperiodism, flowering
GO:2000028 - regulation of photoperiodism, flowering
TO:0000137 - days to heading
TO:0002616 - flowering time
Hd18 Heading date 18 Os08g0143400 GO:0003677 - DNA binding
GO:0005515 - protein binding
GO:0005739 - mitochondrion
GO:0016491 - oxidoreductase activity
GO:0016568 - chromatin modification
GO:0055114 - oxidation-reduction process
HD3A HEADING DATE 3A Os06g0157700 GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0008429 - phosphatidylethanolamine binding
GO:0009648 - photoperiodism
GO:0009908 - flower development
GO:0009909 - regulation of flower development
GO:0010229 - inflorescence development
GO:0030154 - cell differentiation
GO:0048510 - regulation of timing of transition from vegetative to reproductive phase
GO:0048572 - short-day photoperiodism
GO:0048575 - short-day photoperiodism, flowering
GO:0048576 - positive regulation of short-day photoperiodism, flowering
GO:0048578 - positive regulation of long-day photoperiodism, flowering
TO:0000137 - days to heading
TO:0000152 - panicle number
TO:0000229 - photoperiod sensitivity
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000447 - filled grain number
TO:0000455 - seed set percent
TO:0000469 - days to maturity
PO:0000230 - inflorescence meristem
PO:0009003 - sporophyte
PO:0009010 - seed
PO:0009013 - portion of meristem tissue
PO:0009049 - inflorescence
PO:0009082 - spikelet floret
HD3B HEADING DATE 3B Os06g0142600 GO:0007623 - circadian rhythm
GO:0009648 - photoperiodism
GO:0048573 - photoperiodism, flowering
TO:0000137 - days to heading
TO:0000207 - plant height
TO:0000229 - photoperiod sensitivity
TO:0000249 - leaf senescence
TO:0000396 - grain yield
TO:0000590 - grain weight
PO:0001054 - 4 leaf senescence stage
HD5 Heading date (QTL)-5(t) Os08g0174500 GO:0003677 - DNA binding
GO:0005622 - intracellular
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009648 - photoperiodism
GO:0010119 - regulation of stomatal movement
GO:0015979 - photosynthesis
GO:0043565 - sequence-specific DNA binding
GO:0046982 - protein heterodimerization activity
GO:0048573 - photoperiodism, flowering
GO:0048577 - negative regulation of short-day photoperiodism, flowering
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:2000028 - regulation of photoperiodism, flowering
TO:0000050 - inflorescence branching
TO:0000137 - days to heading
TO:0000207 - plant height
TO:0000396 - grain yield
TO:0000522 - stomatal conductance
TO:0000543 - leaf nitrogen content
TO:0002616 - flowering time
TO:0002759 - grain number
HD6 HEADING DATE 6 Os03g0762000 GO:0003700 - transcription factor activity
GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0004713 - protein tyrosine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0006468 - protein phosphorylation
GO:0009648 - photoperiodism
GO:0010229 - inflorescence development
GO:0048579 - negative regulation of long-day photoperiodism, flowering
TO:0000137 - days to heading
TO:0000229 - photoperiod sensitivity
TO:0000469 - days to maturity
TO:0002616 - flowering time
PO:0000230 - inflorescence meristem
PO:0009010 - seed
PO:0009013 - portion of meristem tissue
PO:0009049 - inflorescence
PO:0009082 - spikelet floret
HESO1 a homolog of Arabidopsis thaliana HEN1 suppressor 1 Os01g0846450 GO:0016021 - integral to membrane
GO:0048573 - photoperiodism, flowering
TO:0000137 - days to heading
TO:0002616 - flowering time
HKT8 HIGH-AFFINITY K+ TRANSPORTER 8 Os01g0307500 GO:0005886 - plasma membrane
GO:0006812 - cation transport
GO:0006813 - potassium ion transport
GO:0006814 - sodium ion transport
GO:0006950 - response to stress
GO:0008324 - cation transmembrane transporter activity
GO:0009651 - response to salt stress
GO:0009753 - response to jasmonic acid stimulus
GO:0015079 - potassium ion transmembrane transporter activity
GO:0016021 - integral to membrane
GO:0030955 - potassium ion binding
GO:0031402 - sodium ion binding
GO:0055075 - potassium ion homeostasis
GO:0055078 - sodium ion homeostasis
GO:0055085 - transmembrane transport
TO:0000172 - jasmonic acid sensitivity
TO:0000525 - sodium to potassium content ratio
TO:0000608 - sodium content
TO:0006001 - salt tolerance
PO:0005020 - vascular bundle
PO:0005352 - xylem
PO:0005417 - phloem
HMA3 HEAVY METAL ATPASE 3 Os07g0232900 GO:0000166 - nucleotide binding
GO:0003824 - catalytic activity
GO:0005524 - ATP binding
GO:0006754 - ATP biosynthetic process
GO:0006812 - cation transport
GO:0007034 - vacuolar transport
GO:0008152 - metabolic process
GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 - membrane
GO:0016021 - integral to membrane
GO:0030001 - metal ion transport
GO:0046686 - response to cadmium ion
GO:0046872 - metal ion binding
GO:0046873 - metal ion transmembrane transporter activity
LFL1 LATE-FLOWERING 1 Os01g0713600 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009908 - flower development
GO:0010843 - promoter binding
GO:0048573 - photoperiodism, flowering
TO:0000622 - flower development trait PO:0007615 - flower development stage
PO:0009066 - anther
LOX3 LIPOXYGENASE 3 Os03g0700400 GO:0005506 - iron ion binding
GO:0005515 - protein binding
GO:0016165 - lipoxygenase activity
GO:0016491 - oxidoreductase activity
GO:0031408 - oxylipin biosynthetic process
GO:0046872 - metal ion binding
GO:0055114 - oxidation reduction
GO:0055114 - oxidation-reduction process
TO:0000488 - seed composition based quality trait PO:0009010 - seed
MADS50 MADS BOX GENE 50 Os03g0122600 GO:0003677 - DNA binding
GO:0003700 - sequence-specific DNA binding transcription factor activity
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009908 - flower development
GO:0010229 - inflorescence development
GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0046983 - protein dimerization activity
TO:0000621 - inflorescence development trait PO:0001083 - inflorescence development stage
MADS51 MADS BOX GENE 51 Os01g0922800 GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0046983 - protein dimerization activity
MAPK6 MITOGEN-ACTIVATED PROTEIN KINASE 6 Os06g0154500 GO:0000165 - MAPKKK cascade
GO:0002213 - defense response to insect
GO:0004672 - protein kinase activity
GO:0004707 - MAP kinase activity
GO:0005524 - ATP binding
GO:0005802 - trans-Golgi network
GO:0006468 - protein amino acid phosphorylation
GO:0006468 - protein phosphorylation
GO:0006952 - defense response
GO:0006979 - response to oxidative stress
GO:0009409 - response to cold
GO:0009524 - phragmoplast
GO:0009574 - preprophase band
GO:0009611 - response to wounding
GO:0009651 - response to salt stress
GO:0009723 - response to ethylene stimulus
GO:0009733 - response to auxin stimulus
GO:0009734 - auxin mediated signaling pathway
GO:0009735 - response to cytokinin stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009738 - abscisic acid mediated signaling
GO:0009751 - response to salicylic acid stimulus
GO:0009863 - salicylic acid mediated signaling pathway
GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010120 - camalexin biosynthetic process
GO:0010200 - response to chitin
GO:0010229 - inflorescence development
GO:0042542 - response to hydrogen peroxide
GO:0042742 - defense response to bacterium
GO:0048364 - root development
GO:0048481 - ovule development
GO:0050832 - defense response to fungus
GO:0051301 - cell division
GO:0080027 - response to herbivore
GO:0080136 - priming of cellular response to stress
GO:2000037 - regulation of stomatal complex patterning
GO:2000038 - regulation of stomatal complex development
TO:0000074 - blast disease
TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000397 - grain size
TO:0000439 - fungal disease resistance
TO:0000447 - filled grain number
TO:0000454 - stem borer resistance
TO:0000590 - grain weight
TO:0000615 - abscisic acid sensitivity
TO:0000621 - inflorescence development trait
TO:0000656 - root development trait
TO:0002657 - oxidative stress
TO:0002669 - diterpenoid phytoalexin content
TO:0006001 - salt tolerance
PO:0001083 - inflorescence development stage
PO:0007520 - root development stage
NAL1 NARROW LEAF 1 Os04g0615000 GO:0003824 - catalytic activity
GO:0007275 - multicellular organismal development
GO:0008152 - metabolic process
GO:0009651 - response to salt stress
TO:0000089 - panicle type
TO:0000152 - panicle number
TO:0000262 - panicle shape
TO:0000370 - leaf width
TO:0000396 - grain yield
TO:0000456 - spikelet number
TO:0000492 - leaf shape
TO:0000495 - chlorophyll content
TO:0006001 - salt tolerance
TO:0006032 - panicle size
PO:0009025 - vascular leaf
PO:0020103 - flag leaf
NRAMP5 NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5 Os07g0257200 GO:0005215 - transporter activity
GO:0006810 - transport
GO:0006811 - ion transport
GO:0006828 - manganese ion transport
GO:0015691 - cadmium ion transport
GO:0016020 - membrane
GO:0016021 - integral to membrane
GO:0030001 - metal ion transport
GO:0046686 - response to cadmium ion
GO:0055072 - iron ion homeostasis
OsARD4 Os10g0419500 GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity
GO:0055114 - oxidation-reduction process
OsWD40-19 - Os01g0620100 GO:0005515 - protein binding
GO:0006970 - response to osmotic stress
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
TO:0000095 - osmotic response sensitivity
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0006001 - salt tolerance
Pb1 - Os11g0598500 GO:0043531 - ADP binding
GO:0050832 - defense response to fungus
TO:0000468 - leaf blast disease resistance
TO:0000477 - panicle blast disease resistance
PO:0009049 - inflorescence
Pi19 PYRICULARIA ORYZAE RESISTANCE 19 Os12g0285100 GO:0009620 - response to fungus TO:0000468 - leaf blast disease resistance
TO:0000477 - panicle blast disease resistance
TO:0000494 - pigment content
PO:0009025 - vascular leaf
Pi21 PYRICULARIA ORYZAE RESISTANCE 21 Os04g0401000 GO:0009620 - response to fungus TO:0000468 - leaf blast disease resistance
TO:0000477 - panicle blast disease resistance
TO:0000497 - fertility restoration trait
PO:0009025 - vascular leaf
PIA (Os11gRGA4) PYRICULARIA ORYZAE RESISTANCE A Os11g0225100 GO:0006952 - defense response
GO:0043531 - ADP binding
PIA (Os11gRGA5) PYRICULARIA ORYZAE RESISTANCE A Os11g0225300 GO:0002238 - response to molecule of fungal origin
GO:0006952 - defense response
GO:0016046 - detection of fungus
GO:0043531 - ADP binding
GO:0050832 - defense response to fungus
TO:0000074 - blast disease
PISH PYRICULARIA ORYZAE RESISTANCE SH Os01g0782100 GO:0009620 - response to fungus
GO:0043531 - ADP binding
TO:0000468 - leaf blast disease resistance
TO:0000477 - panicle blast disease resistance
TO:0000519 - rooting depth
PO:0009006 - shoot system
PO:0009025 - vascular leaf
PIT PYRICULARIA ORYZAE RESISTANCE T Os01g0149500 GO:0009620 - response to fungus
GO:0043531 - ADP binding
TO:0000468 - leaf blast disease resistance
TO:0000477 - panicle blast disease resistance
TO:0000520 - stomatal closure rate
PO:0009025 - vascular leaf
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0020141 - stem node
PL PURPLE LEAF Os04g0557500 GO:0009812 - flavonoid metabolic process TO:0000059 - node color
TO:0000197 - ligule color
TO:0000294 - auricle color
TO:0000299 - leaf lamina color
TO:0000364 - leaf collar color
TO:0000367 - basal leaf sheath color
TO:0000426 - internode color
PO:0006012 - leaf collar
PO:0009025 - vascular leaf
PO:0020104 - leaf sheath
PO:0020105 - ligule
PO:0020106 - leaf sheath auricle
PO:0020141 - stem node
PO:0020142 - stem internode
PSR1 PROMOTER OF SHOOT REGENERATION 1 Os01g0357100 GO:0006810 - transport
GO:0009507 - chloroplast
GO:0016491 - oxidoreductase activity
GO:0020037 - heme binding
GO:0022900 - electron transport chain
GO:0042128 - nitrate assimilation
GO:0046872 - metal ion binding
GO:0048307 - ferredoxin-nitrite reductase activity
GO:0051536 - iron-sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0055114 - oxidation-reduction process
qLTG-3-1(t) low-temperature germianability (QTL)-3-1(t) Os03g0103300 GO:0009409 - response to cold
GO:0009627 - systemic acquired resistance
GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
GO:0050832 - defense response to fungus
TO:0000253 - seed dormancy
TO:0000303 - cold tolerance
TO:0000615 - abscisic acid sensitivity
qSH1 Shattering (QTL)-1 Os01g0848400 GO:0003677 - DNA binding
GO:0003700 - sequence-specific DNA binding transcription factor activity
GO:0005515 - protein binding
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
TO:0000473 - grain shattering
RBG1 Os10g0130000 GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0004713 - protein tyrosine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein phosphorylation
RBG2 Os01g0771900 GO:0005975 - carbohydrate metabolic process
RC BROWN PERICARP AND SEED COAT Os07g0211500 GO:0009812 - flavonoid metabolic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0046283 - anthocyanin metabolic process
TO:0000190 - seed coat color
TO:0000487 - endosperm color
TO:0000707 - pericarp color
PO:0009088 - seed coat
PO:0009089 - endosperm
RD RED PERICARP AND SEED COAT Os01g0633500 GO:0003824 - catalytic activity
GO:0009416 - response to light stimulus
GO:0009812 - flavonoid metabolic process
GO:0009813 - flavonoid biosynthetic process
GO:0010023 - proanthocyanidin biosynthetic process
GO:0044237 - cellular metabolic process
GO:0050662 - coenzyme binding
GO:0051555 - flavonol biosynthetic process
TO:0000075 - light sensitivity
TO:0000190 - seed coat color
TO:0000486 - seed color
TO:0000487 - endosperm color
TO:0000707 - pericarp color
PO:0009088 - seed coat
PO:0009089 - endosperm
RFT1 RICE FLOWERING-LOCUS T 1 Os06g0157500 GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0009908 - flower development
GO:0009909 - regulation of flower development
GO:0010229 - inflorescence development
GO:0030154 - cell differentiation
GO:0048510 - regulation of timing of transition from vegetative to reproductive phase
GO:0048573 - photoperiodism, flowering
GO:0048586 - regulation of long-day photoperiodism, flowering
TO:0000137 - days to heading
RGB1 heterotrimeric G protein beta 1 subunit Os08g0537800 GO:0004843 - ubiquitin-specific protease activity
GO:0005634 - nucleus
GO:0016579 - protein deubiquitination
GO:0016787 - hydrolase activity
GO:0019784 - NEDD8-specific protease activity
GO:0042127 - regulation of cell proliferation
GO:0043130 - ubiquitin binding
GO:0071108 - protein K48-linked deubiquitination
TO:0000051 - stem strength
TO:0000346 - tiller number
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000399 - grain thickness
TO:0000447 - filled grain number
TO:0000590 - grain weight
TO:0000734 - grain length
TO:0002730 - grain shape
TO:0002759 - grain number
TO:0006032 - panicle size
PO:0006079 - shoot meristem
PO:0009015 - portion of vascular tissue
PO:0009049 - inflorescence
PO:0020123 - root cap
PO:0020149 - quiescent center
SD1 SEMIDWARF 1 Os01g0883800 GO:0005506 - iron ion binding
GO:0009628 - response to abiotic stimulus
GO:0009685 - gibberellin metabolic process
GO:0009686 - gibberellin biosynthetic process
GO:0009826 - unidimensional cell growth
GO:0016491 - oxidoreductase activity
GO:0045544 - gibberellin 20-oxidase activity
GO:0055114 - oxidation reduction
GO:0055114 - oxidation-reduction process
TO:0000207 - plant height
TO:0000357 - growth and development trait
TO:0000401 - plant growth hormone sensitivity
TO:0000576 - stem length
TO:0000599 - enzyme activity
PO:0009047 - stem
PO:0020142 - stem internode
Sdr4 SEED DORMANCY 4 Os07g0585700 GO:0009738 - abscisic acid mediated signaling
GO:0009845 - seed germination
TO:0000253 - seed dormancy
TO:0000615 - abscisic acid sensitivity
TO:0000619 - vivipary
PO:0009010 - seed
SLG SLENDER GRAIN Os08g0562500 GO:0001558 - regulation of cell growth
GO:0005634 - nucleus
GO:0005737 - cytoplasm
GO:0010090 - trichome morphogenesis
GO:0010143 - cutin biosynthetic process
GO:0010229 - inflorescence development
GO:0010268 - brassinosteroid homeostasis
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups
GO:0051179 - localization
TO:0000206 - leaf angle
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000590 - grain weight
TO:0000621 - inflorescence development trait
TO:0000734 - grain length
TO:0002676 - brassinosteroid content
PO:0000034 - vascular system
PO:0000229 - flower meristem
PO:0001083 - inflorescence development stage
PO:0006327 - spikelet meristem
PO:0009037 - lemma
PO:0009038 - palea
PO:0020141 - stem node
PO:0025127 - primordium
PO:0025477 - floral organ primordium
SMG1 SMALL GRAIN 1 Os02g0787300 GO:0000165 - MAPKKK cascade
GO:0002213 - defense response to insect
GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein phosphorylation
GO:0008283 - cell proliferation
GO:0009611 - response to wounding
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0009741 - response to brassinosteroid stimulus
GO:0009751 - response to salicylic acid stimulus
GO:0010200 - response to chitin
GO:0010229 - inflorescence development
GO:0042742 - defense response to bacterium
GO:0048364 - root development
GO:0050832 - defense response to fungus
GO:0080027 - response to herbivore
TO:0000040 - panicle length
TO:0000074 - blast disease
TO:0000160 - UV light sensitivity
TO:0000163 - auxin sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000207 - plant height
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000439 - fungal disease resistance
TO:0000447 - filled grain number
TO:0000454 - stem borer resistance
TO:0000615 - abscisic acid sensitivity
TO:0000621 - inflorescence development trait
TO:0000656 - root development trait
TO:0000734 - grain length
TO:0002669 - diterpenoid phytoalexin content
TO:0002677 - brassinosteroid sensitivity
PO:0001083 - inflorescence development stage
PO:0007520 - root development stage
SNB SUPERNUMERARY BRACT GENE Os07g0235800 GO:0003677 - DNA binding
GO:0003700 - sequence-specific DNA binding transcription factor activity
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0009908 - flower development
GO:0010022 - meristem determinacy
GO:0010077 - maintenance of inflorescence meristem identity
GO:0010092 - specification of organ identity
GO:0045449 - regulation of transcription
GO:0048506 - regulation of timing of meristematic phase transition
TO:0000208 - lemma number
TO:0000209 - palea number
TO:0000225 - stamen number
TO:0000382 - 1000-seed weight
TO:0000397 - grain size
TO:0000436 - spikelet sterility
TO:0000622 - flower development trait
TO:0000650 - lemma length
TO:0000671 - pre-flowering flower abortion
TO:0006030 - spikelet meristem identity
TO:0006032 - panicle size
PO:0006327 - spikelet meristem
PO:0007615 - flower development stage
PO:0009029 - stamen
PO:0009030 - carpel
PO:0009034 - flower bract
PO:0009036 - lodicule
PO:0009039 - glume
TFX1 BZIP TRANSCRIPTION FACTOR TFX1 Os09g0474000 GO:0003700 - DNA-binding transcription factor activity
GO:0003700 - transcription factor activity
GO:0042742 - defense response to bacterium
GO:0043565 - sequence-specific DNA binding
TO:0000175 - bacterial blight disease resistance
TGW6 TOTAL GRAIN WEIGHT6 Os06g0623700 GO:0005783 - endoplasmic reticulum
GO:0009058 - biosynthetic process
GO:0009683 - indoleacetic acid metabolic process
GO:0016020 - membrane
GO:0016788 - hydrolase activity, acting on ester bonds
GO:0016844 - strictosidine synthase activity
TO:0000590 - grain weight
TO:0000734 - grain length
VP1 VIVIPAROUS 1 Os01g0911700 GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009414 - response to water deprivation
GO:0009737 - response to abscisic acid stimulus
GO:0009738 - abscisic acid mediated signaling
GO:0009790 - embryonic development
GO:0009845 - seed germination
GO:0017163 - basal transcription repressor activity
GO:0045449 - regulation of transcription
TO:0000253 - seed dormancy
TO:0000276 - drought tolerance
TO:0000615 - abscisic acid sensitivity
TO:0000619 - vivipary
PO:0009010 - seed
WFP WEALTHY FARMER'S PANICLE Os08g0509600 GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0008270 - zinc ion binding
GO:0009755 - hormone-mediated signaling
GO:0045449 - regulation of transcription
TO:0000011 - nitrogen sensitivity
TO:0000017 - anatomy and morphology related trait
TO:0000050 - inflorescence branching
TO:0000152 - panicle number
TO:0000329 - tillering ability
TO:0000346 - tiller number
TO:0000396 - grain yield
TO:0000447 - filled grain number
TO:0000455 - seed set percent
TO:0000547 - primary branch number
TO:0002759 - grain number
WX1 GLUTINOUS ENDOSPERM Os06g0133000 GO:0004373 - glycogen (starch) synthase activity
GO:0005982 - starch metabolic process
GO:0009011 - starch synthase activity
GO:0009058 - biosynthetic process
GO:0009250 - glucan biosynthetic process
GO:0009415 - response to water
GO:0009501 - amyloplast
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0009568 - amyloplast starch grain
GO:0009651 - response to salt stress
GO:0009845 - seed germination
GO:0019252 - starch biosynthetic process
GO:0033840 - NDP-glucose-starch glucosyltransferase activity
GO:0048316 - seed development
TO:0000098 - glutinous endosperm
TO:0000162 - seed quality
TO:0000196 - amylose content
TO:0000237 - water stress trait
TO:0000653 - seed development trait
TO:0006001 - salt tolerance
PO:0001170 - seed development stage
PO:0007022 - seed imbibition stage
PO:0007057 - 0 seed germination stage
PO:0009010 - seed
PO:0009089 - endosperm