Citation
When using the data obtained from the RAP-DB,
kindly acknowledge the RAP project contribution
by citing the following papers:
- Rice Annotation Project Database (RAP-DB): An integrative and interactive database for rice genomics
Sakai, H., Lee, SS., et al., Plant & Cell Physiol., 54(2):e6 (2013)
[PubMed]
[PCP]
- Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Kawahara, Y., Bastide, M., et al., Rice, 6:4 (2013)
[PubMed]
[RICE]
Related research papers and book chapters
- The Rice Annotation Project Database (RAP-DB): 2008 update
Rice Annotation Project, Nucleic Acids Res., 36(Database issue), D1028-33 (2008).
[PubMed]
[NAR]
- Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
Itoh, T., Tanaka, T. et al., Genome Res., 17, 175-83 (2007).
[PubMed]
[Genome Res]
- Bioinformatics and Database of the Rice Genome
Numa, H., Tanaka, T. and Itoh, T.
in RIce Biology in the Genomics Era. (Hirano, H.-Y. et al. Ed.) Springer-Verlag, Berlin Heidelberg, pp.13-21 (2008)
[Springer]
- Rice Genome Annotation: Beginnings of Functional Genomics
Itoh, T.
in Rice Functional Genomics: Challenges, Progress and Prospects (Narayana M. Upadhyaya, Ed.) Springer, New York, pp. 21-30 (2007).
[Springer]
- Birth and death of genes promoted by transposable elements in Oryza sativa
Sakai, H., Tanaka, T. and Itoh, T., Gene., 392, 59-63 (2007).
[PubMed]
[Gene]
- Rate and polarity of genes fusion and fission in Oryza sativa
Nakamura, Y., Itoh, T. and Martin W., Mol. Biol. Evol., 24, 110-121 (2006).
[PubMed]
[MBE]
- The rice annotation project database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
Ohyanagi, H., Tanaka, T., Sakai, H., Shigemoto, Y., Yamaguchi, K., Habara, T., Fujii, Y., Antonio, BA., Nagamura, Y., Imanishi, T., Ikeo, K., Itoh, T., Gojobori, T. and Sasaki, T., Nucleic Acids Res., 34(Database issue), D741-4 (2006).
[PubMed]
[NAR]
- The map-based sequence of the rice genome
International Rice Genome Sequencing Project, Nature, 436, 793-800 (2005).
[PubMed]
[Nature]