Number of genes

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Chromosome	1	2	3	4	5	6	7	8	9	10	11	12	Total
Protein-coding loci with rice FLcDNAs	3421	2737	3050	2135	1968	1896	1830	1602	1321	1230	1386	1367	23943
Protein-coding loci without rice FLcDNAs	1247	994	1031	805	719	859	696	666	525	609	653	532	9336
Non-protein coding loci with rice FLcDNAs	93	71	76	55	35	64	40	44	39	38	50	48	653
Non-protein coding loci without rice FLcDNAs	211	162	203	145	133	122	101	104	79	95	100	82	1537
Alternative variants	985	821	972	609	547	512	465	449	355	321	294	337	6667
Ab initio predicted genes with evidence of expression	301	252	190	219	172	218	203	172	147	143	235	148	2400
Ab initio predicted genes without any transcripts	943	754	773	752	649	655	664	633	541	494	687	576	8121
Loci with CGSNL annotation	240	188	231	133	145	148	108	113	89	73	61	79	1608